Wall clock time and date at job start Mon Mar 30 2020 00:50:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46500 * 119.99857 * 2 1 4 4 C 1.50704 * 109.47627 * 270.00012 * 3 2 1 5 5 H 1.07998 * 119.99726 * 0.02562 * 4 3 2 6 6 C 1.37875 * 120.00234 * 179.97438 * 4 3 2 7 7 N 1.31513 * 119.99826 * 0.02562 * 6 4 3 8 8 Si 1.86798 * 119.99788 * 180.02562 * 6 4 3 9 9 H 1.48497 * 109.47013 * 90.00389 * 8 6 4 10 10 H 1.48505 * 109.46899 * 210.00255 * 8 6 4 11 11 H 1.48498 * 109.47249 * 329.99880 * 8 6 4 12 12 C 1.34771 * 120.00211 * 180.02562 * 2 1 3 13 13 O 1.21590 * 120.00225 * 184.41328 * 12 2 1 14 14 C 1.47547 * 119.99938 * 4.41248 * 12 2 1 15 15 C 1.39767 * 120.16945 * 310.82618 * 14 12 2 16 16 C 1.37953 * 119.92183 * 180.02562 * 15 14 12 17 17 F 1.35101 * 119.86627 * 179.97438 * 16 15 14 18 18 C 1.38740 * 120.26851 * 0.02562 * 16 15 14 19 19 C 1.38204 * 120.34084 * 359.67864 * 18 16 15 20 20 F 1.35098 * 119.96583 * 180.29907 * 19 18 16 21 21 C 1.38901 * 120.07146 * 0.60450 * 19 18 16 22 22 O 1.35752 * 120.13371 * 179.70100 * 21 19 18 23 23 H 1.08997 * 109.47419 * 273.02023 * 1 2 3 24 24 H 1.09003 * 109.47242 * 33.02148 * 1 2 3 25 25 H 1.08993 * 109.46958 * 153.01721 * 1 2 3 26 26 H 1.09005 * 109.47448 * 30.00321 * 3 2 1 27 27 H 1.09004 * 109.47133 * 150.00307 * 3 2 1 28 28 H 0.97003 * 119.99654 * 179.97438 * 7 6 4 29 29 H 1.07999 * 120.03780 * 359.97438 * 15 14 12 30 30 H 1.07997 * 119.82305 * 179.97438 * 18 16 15 31 31 H 0.96703 * 113.99373 * 269.72187 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4487 1.7039 -1.4208 5 1 2.0974 1.0964 -2.2417 6 6 3.1259 2.8781 -1.6727 7 7 3.5532 3.6182 -0.6730 8 14 3.4366 3.4178 -3.4338 9 1 2.3063 4.2604 -3.9000 10 1 4.6967 4.2011 -3.4965 11 1 3.5541 2.2208 -4.3049 12 6 2.1389 -1.1671 -0.0005 13 8 3.3521 -1.1687 0.0805 14 6 1.4044 -2.4430 -0.0994 15 6 0.3108 -2.6904 0.7349 16 6 -0.3719 -3.8853 0.6385 17 9 -1.4286 -4.1235 1.4459 18 6 0.0229 -4.8439 -0.2835 19 6 1.0990 -4.6083 -1.1181 20 9 1.4733 -5.5445 -2.0173 21 6 1.8002 -3.4125 -1.0291 22 8 2.8611 -3.1823 -1.8441 23 1 -0.3634 0.0541 1.0262 24 1 -0.3634 0.8617 -0.5600 25 1 -0.3633 -0.9157 -0.4662 26 1 1.6084 2.0284 0.5139 27 1 3.1499 1.1384 0.5138 28 1 4.0300 4.4441 -0.8502 29 1 0.0010 -1.9473 1.4548 30 1 -0.5164 -5.7770 -0.3526 31 1 3.7081 -3.4725 -1.4786 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930592855.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:05 Heat of formation + Delta-G solvation = -155.326288 kcal Electronic energy + Delta-G solvation = -20605.590176 eV Core-core repulsion = 16908.941287 eV Total energy + Delta-G solvation = -3696.648889 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.081 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -50.14468 -50.07054 -41.56978 -39.55275 -37.84637 -36.65292 -34.79805 -32.52776 -30.54671 -29.69336 -27.60759 -25.98830 -24.27694 -23.80364 -21.03823 -19.69003 -19.09720 -18.76660 -18.60101 -17.58900 -17.33754 -17.16583 -16.90802 -16.55909 -16.26853 -16.09765 -15.96278 -15.43847 -14.95664 -14.64983 -14.24635 -13.91349 -13.69988 -13.51998 -13.34897 -13.06280 -12.93292 -12.71928 -12.48203 -12.24201 -12.02241 -11.74625 -10.93565 -10.65505 -10.23860 -9.75643 -9.53006 -8.24813 -6.39130 -0.55537 -0.34018 1.36033 1.38852 1.48378 1.55414 1.91732 2.26305 2.37829 2.64239 2.87359 3.05360 3.22155 3.28782 3.62995 3.77227 4.18750 4.31595 4.43501 4.59295 4.61317 4.70339 4.76527 4.89170 4.98384 5.19655 5.41902 5.49371 5.76121 6.02245 6.48566 6.56036 6.69349 7.15832 7.33817 8.82470 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.024534 B = 0.005363 C = 0.004777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.020219 B = 5220.056065 C = 5860.307336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.597 5.597 3 C 0.259 3.741 4 C -0.546 4.546 5 H 0.049 0.951 6 C 0.012 3.988 7 N -0.925 5.925 8 Si 0.965 3.035 9 H -0.262 1.262 10 H -0.278 1.278 11 H -0.276 1.276 12 C 0.550 3.450 13 O -0.578 6.578 14 C -0.106 4.106 15 C -0.109 4.109 16 C 0.128 3.872 17 F -0.119 7.119 18 C -0.137 4.137 19 C 0.099 3.901 20 F -0.123 7.123 21 C 0.102 3.898 22 O -0.495 6.495 23 H 0.084 0.916 24 H 0.071 0.929 25 H 0.085 0.915 26 H 0.033 0.967 27 H 0.006 0.994 28 H 0.268 0.732 29 H 0.169 0.831 30 H 0.190 0.810 31 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.044 -16.785 2.458 20.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.327 5.327 3 C 0.138 3.862 4 C -0.585 4.585 5 H 0.068 0.932 6 C -0.187 4.187 7 N -0.564 5.564 8 Si 0.790 3.210 9 H -0.187 1.187 10 H -0.204 1.204 11 H -0.201 1.201 12 C 0.337 3.663 13 O -0.459 6.459 14 C -0.110 4.110 15 C -0.128 4.128 16 C 0.108 3.892 17 F -0.097 7.097 18 C -0.157 4.157 19 C 0.079 3.921 20 F -0.102 7.102 21 C 0.054 3.946 22 O -0.308 6.308 23 H 0.102 0.898 24 H 0.089 0.911 25 H 0.104 0.896 26 H 0.051 0.949 27 H 0.024 0.976 28 H 0.077 0.923 29 H 0.187 0.813 30 H 0.207 0.793 31 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges -10.776 -16.382 2.173 19.729 hybrid contribution 0.932 0.348 -0.561 1.142 sum -9.844 -16.034 1.613 18.884 Atomic orbital electron populations 1.22186 0.77842 1.03993 1.03200 1.48070 1.08524 1.06127 1.69934 1.18871 0.91461 0.79661 0.96229 1.21664 1.37205 1.06687 0.92934 0.93222 1.25790 0.94770 0.96313 1.01853 1.70034 1.38747 1.14770 1.32894 0.85450 0.78226 0.78146 0.79215 1.18731 1.20373 1.20134 1.18322 0.86823 0.84115 0.77003 1.90726 1.15419 1.87697 1.52015 1.19887 0.98115 0.94775 0.98177 1.21431 0.93485 0.97929 0.99979 1.16828 0.87013 0.93556 0.91788 1.91585 1.53051 1.94448 1.70663 1.21301 0.96872 1.02442 0.95041 1.17400 0.97227 0.85630 0.91876 1.91542 1.90796 1.62845 1.64971 1.18552 0.92310 0.91528 0.92176 1.84747 1.17849 1.85158 1.43084 0.89783 0.91055 0.89622 0.94906 0.97591 0.92262 0.81338 0.79273 0.72737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.07 9.09 127.77 1.16 3.23 16 2 N -0.60 -25.35 2.86 -854.92 -2.44 -27.79 16 3 C 0.26 13.82 5.21 85.63 0.45 14.27 16 4 C -0.55 -31.64 9.39 25.60 0.24 -31.40 16 5 H 0.05 2.90 7.81 -2.91 -0.02 2.88 16 6 C 0.01 0.70 5.46 84.65 0.46 1.16 16 7 N -0.92 -55.42 13.29 21.45 0.28 -55.14 16 8 Si 0.97 45.12 29.54 68.60 2.03 47.15 16 9 H -0.26 -11.48 7.11 99.48 0.71 -10.78 16 10 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 11 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 12 C 0.55 23.24 6.94 86.70 0.60 23.84 16 13 O -0.58 -29.54 16.09 4.89 0.08 -29.46 16 14 C -0.11 -3.25 4.90 -20.02 -0.10 -3.35 16 15 C -0.11 -2.41 7.58 22.57 0.17 -2.24 16 16 C 0.13 2.29 7.28 22.32 0.16 2.45 16 17 F -0.12 -1.98 17.26 44.97 0.78 -1.20 16 18 C -0.14 -2.27 9.98 22.38 0.22 -2.05 16 19 C 0.10 2.24 7.30 22.42 0.16 2.40 16 20 F -0.12 -2.86 17.11 44.97 0.77 -2.09 16 21 C 0.10 2.99 6.70 22.86 0.15 3.14 16 22 O -0.50 -16.39 12.41 -81.88 -1.02 -17.41 16 23 H 0.08 1.93 7.56 -2.39 -0.02 1.91 16 24 H 0.07 2.22 8.10 -2.39 -0.02 2.20 16 25 H 0.09 2.13 5.68 -2.39 -0.01 2.12 16 26 H 0.03 1.75 8.07 -2.38 -0.02 1.73 16 27 H 0.01 0.36 7.36 -2.39 -0.02 0.35 16 28 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 29 H 0.17 3.19 6.58 -2.91 -0.02 3.17 16 30 H 0.19 1.86 8.06 -2.91 -0.02 1.83 16 31 H 0.41 10.84 9.06 -74.05 -0.67 10.17 16 Total: -1.00 -73.54 286.30 4.69 -68.85 By element: Atomic # 1 Polarization: 5.12 SS G_CDS: 0.53 Total: 5.64 kcal Atomic # 6 Polarization: 7.76 SS G_CDS: 3.69 Total: 11.45 kcal Atomic # 7 Polarization: -80.77 SS G_CDS: -2.16 Total: -82.93 kcal Atomic # 8 Polarization: -45.93 SS G_CDS: -0.94 Total: -46.87 kcal Atomic # 9 Polarization: -4.84 SS G_CDS: 1.55 Total: -3.30 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Total: -73.54 4.69 -68.85 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930592855.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.474 kcal (2) G-P(sol) polarization free energy of solvation -73.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds