Wall clock time and date at job start Mon Mar 30 2020 01:21:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.47585 * 2 1 4 4 C 1.50702 * 109.47046 * 240.00110 * 2 1 3 5 5 H 1.07996 * 120.00374 * 245.35449 * 4 2 1 6 6 C 1.37876 * 119.99749 * 65.34843 * 4 2 1 7 7 N 1.31518 * 120.00343 * 5.14958 * 6 4 2 8 8 Si 1.86807 * 120.00265 * 185.14783 * 6 4 2 9 9 H 1.48494 * 109.47145 * 84.99953 * 8 6 4 10 10 H 1.48497 * 109.47300 * 205.00262 * 8 6 4 11 11 H 1.48503 * 109.46685 * 325.00509 * 8 6 4 12 12 N 1.46504 * 109.47166 * 120.00872 * 2 1 3 13 13 C 1.34778 * 119.99200 * 274.99549 * 12 2 1 14 14 O 1.21470 * 120.00425 * 359.97438 * 13 12 2 15 15 C 1.48465 * 119.99377 * 180.02562 * 13 12 2 16 16 C 1.39534 * 120.54478 * 179.97438 * 15 13 12 17 17 C 1.38764 * 118.25838 * 179.97438 * 16 15 13 18 18 C 1.50710 * 120.42270 * 180.02562 * 17 16 15 19 19 F 1.39895 * 109.47245 * 300.00354 * 18 17 16 20 20 F 1.39897 * 109.46830 * 60.00398 * 18 17 16 21 21 N 1.32202 * 119.15259 * 0.02562 * 17 16 15 22 22 C 1.31886 * 121.03073 * 359.97438 * 21 17 16 23 23 N 1.31576 * 121.91942 * 359.74012 * 22 21 17 24 24 H 1.08998 * 109.46491 * 294.97171 * 1 2 3 25 25 H 1.08996 * 109.47139 * 54.96852 * 1 2 3 26 26 H 1.08998 * 109.47372 * 174.97377 * 1 2 3 27 27 H 0.96999 * 120.00186 * 179.97438 * 7 6 4 28 28 H 0.96996 * 120.00602 * 94.99213 * 12 2 1 29 29 H 1.07993 * 120.87243 * 359.95816 * 16 15 13 30 30 H 1.09003 * 109.46677 * 180.02562 * 18 17 16 31 31 H 1.08000 * 119.03630 * 180.02562 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5800 -1.6361 -1.1339 6 6 1.7925 -0.1785 -2.4797 7 7 1.2153 0.9977 -2.5939 8 14 2.2876 -1.1284 -4.0102 9 1 1.2109 -2.0864 -4.3680 10 1 2.5006 -0.1809 -5.1336 11 1 3.5448 -1.8730 -3.7454 12 7 2.0184 -0.6908 1.1961 13 6 2.1471 -0.0184 2.3571 14 8 1.8587 1.1603 2.4116 15 6 2.6425 -0.7183 3.5691 16 6 2.7808 -0.0333 4.7768 17 6 3.2475 -0.7340 5.8798 18 6 3.4148 -0.0425 7.2084 19 9 4.3251 1.0113 7.0742 20 9 2.1795 0.4595 7.6316 21 7 3.5434 -2.0160 5.7504 22 6 3.4011 -2.6332 4.5936 23 7 2.9569 -2.0106 3.5230 24 1 -0.3632 0.4339 0.9316 25 1 -0.3633 0.5899 -0.8415 26 1 -0.3634 -1.0237 -0.0900 27 1 1.0469 1.3721 -3.4728 28 1 2.2490 -1.6320 1.1525 29 1 2.5313 1.0148 4.8511 30 1 3.7894 -0.7544 7.9439 31 1 3.6521 -3.6813 4.5243 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931157242.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:20 Heat of formation + Delta-G solvation = -90.194833 kcal Electronic energy + Delta-G solvation = -19975.506709 eV Core-core repulsion = 16313.974883 eV Total energy + Delta-G solvation = -3661.531826 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.087 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.40078 -47.38886 -41.41089 -38.85019 -35.01015 -34.53356 -32.62683 -32.37107 -29.19672 -27.90965 -25.40914 -25.12871 -23.80256 -21.53090 -19.86897 -18.62963 -18.56986 -17.65047 -17.30566 -16.48041 -15.82761 -15.63309 -15.38049 -15.23384 -15.06654 -14.30161 -14.26045 -13.95671 -13.74004 -13.23206 -13.19253 -12.47709 -11.90590 -11.84923 -11.31633 -11.22226 -11.10518 -11.00336 -10.86252 -10.43921 -10.35677 -10.05266 -10.02851 -9.35500 -9.15115 -8.61491 -8.10314 -6.18945 -4.26288 0.26267 0.45600 2.78681 2.89649 3.23339 3.28780 3.30711 3.38153 3.71726 3.74224 3.74983 4.19528 4.28570 4.36199 4.58054 4.67745 4.83050 5.15619 5.25159 5.37620 5.90045 6.43232 6.69895 6.79652 6.98479 7.23683 7.39994 7.57507 7.62160 7.75750 7.97637 8.46487 8.65327 8.88726 9.40088 10.89464 Molecular weight = 271.09amu Principal moments of inertia in cm(-1) A = 0.035616 B = 0.003959 C = 0.003759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.982723 B = 7071.591185 C = 7447.446453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.259 3.741 3 H 0.058 0.942 4 C -0.537 4.537 5 H 0.064 0.936 6 C 0.069 3.931 7 N -0.882 5.882 8 Si 0.902 3.098 9 H -0.278 1.278 10 H -0.285 1.285 11 H -0.273 1.273 12 N -0.674 5.674 13 C 0.549 3.451 14 O -0.534 6.534 15 C 0.154 3.846 16 C -0.137 4.137 17 C 0.093 3.907 18 C 0.329 3.671 19 F -0.187 7.187 20 F -0.187 7.187 21 N -0.490 5.490 22 C 0.297 3.703 23 N -0.478 5.478 24 H 0.018 0.982 25 H 0.078 0.922 26 H 0.033 0.967 27 H 0.266 0.734 28 H 0.401 0.599 29 H 0.167 0.833 30 H 0.139 0.861 31 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.109 -6.076 16.922 18.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.158 3.842 3 H 0.076 0.924 4 C -0.576 4.576 5 H 0.082 0.918 6 C -0.135 4.135 7 N -0.519 5.519 8 Si 0.730 3.270 9 H -0.204 1.204 10 H -0.211 1.211 11 H -0.198 1.198 12 N -0.321 5.321 13 C 0.330 3.670 14 O -0.411 6.411 15 C 0.004 3.996 16 C -0.160 4.160 17 C -0.056 4.056 18 C 0.275 3.725 19 F -0.168 7.168 20 F -0.169 7.169 21 N -0.205 5.205 22 C 0.009 3.991 23 N -0.194 5.194 24 H 0.037 0.963 25 H 0.097 0.903 26 H 0.052 0.948 27 H 0.076 0.924 28 H 0.236 0.764 29 H 0.184 0.816 30 H 0.156 0.844 31 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 4.023 -5.991 16.656 18.152 hybrid contribution 0.120 -0.054 -0.835 0.846 sum 4.143 -6.045 15.821 17.436 Atomic orbital electron populations 1.22026 0.98223 0.99897 0.99897 1.18949 0.91040 0.94554 0.79636 0.92384 1.21143 1.37232 1.08975 0.90201 0.91825 1.24886 0.94811 0.94724 0.99083 1.69949 1.41832 1.15804 1.24339 0.86449 0.78979 0.79595 0.82022 1.20374 1.21095 1.19829 1.46511 1.61741 1.14375 1.09495 1.17732 0.80188 0.86426 0.82699 1.90783 1.51377 1.14742 1.84198 1.22302 0.92436 0.89727 0.95124 1.22783 0.96843 1.03904 0.92458 1.21999 0.96306 0.91569 0.95717 1.20071 0.74984 0.84592 0.92895 1.93065 1.66718 1.60234 1.96820 1.93063 1.44246 1.89002 1.90555 1.67928 1.15244 1.08762 1.28531 1.25053 0.91166 1.00803 0.82101 1.68450 1.09622 1.09105 1.32205 0.96275 0.90319 0.94819 0.92446 0.76423 0.81592 0.84431 0.77294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.41 9.26 37.16 0.34 -3.07 16 2 C 0.26 6.50 2.43 -69.08 -0.17 6.33 16 3 H 0.06 1.67 7.56 -51.93 -0.39 1.28 16 4 C -0.54 -14.06 8.67 -34.44 -0.30 -14.36 16 5 H 0.06 1.60 7.72 -52.49 -0.41 1.19 16 6 C 0.07 1.83 5.29 -17.82 -0.09 1.74 16 7 N -0.88 -24.63 11.98 55.43 0.66 -23.96 16 8 Si 0.90 20.41 29.54 -169.99 -5.02 15.39 16 9 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 10 H -0.29 -6.46 7.11 56.52 0.40 -6.05 16 11 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 12 N -0.67 -14.23 5.06 -55.68 -0.28 -14.51 16 13 C 0.55 11.10 7.79 -12.04 -0.09 11.01 16 14 O -0.53 -12.38 16.09 5.39 0.09 -12.29 16 15 C 0.15 2.49 6.79 -82.63 -0.56 1.93 16 16 C -0.14 -1.95 9.32 -38.90 -0.36 -2.31 16 17 C 0.09 1.10 6.31 -82.23 -0.52 0.58 16 18 C 0.33 3.09 5.58 36.01 0.20 3.29 16 19 F -0.19 -2.02 17.27 2.25 0.04 -1.98 16 20 F -0.19 -2.01 17.27 2.25 0.04 -1.97 16 21 N -0.49 -5.52 10.35 -10.81 -0.11 -5.63 16 22 C 0.30 3.28 12.27 -92.26 -1.13 2.15 16 23 N -0.48 -6.78 9.70 -11.14 -0.11 -6.89 16 24 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.08 2.04 6.84 -51.93 -0.36 1.68 16 26 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 27 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 28 H 0.40 7.67 7.91 -40.82 -0.32 7.35 16 29 H 0.17 2.34 7.74 -52.49 -0.41 1.93 16 30 H 0.14 0.82 8.12 -51.93 -0.42 0.40 16 31 H 0.21 1.43 8.06 -52.49 -0.42 1.01 16 LS Contribution 290.83 15.07 4.38 4.38 Total: -1.00 -30.15 290.83 -5.70 -35.85 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -2.71 Total: 4.33 kcal Atomic # 6 Polarization: 9.97 SS G_CDS: -2.69 Total: 7.29 kcal Atomic # 7 Polarization: -51.15 SS G_CDS: 0.16 Total: -50.99 kcal Atomic # 8 Polarization: -12.38 SS G_CDS: 0.09 Total: -12.29 kcal Atomic # 9 Polarization: -4.03 SS G_CDS: 0.08 Total: -3.95 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -30.15 -5.70 -35.85 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931157242.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.344 kcal (2) G-P(sol) polarization free energy of solvation -30.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds