Wall clock time and date at job start Mon Mar 30 2020 01:21:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.47585 * 2 1 4 4 C 1.50702 * 109.47046 * 240.00110 * 2 1 3 5 5 H 1.07996 * 120.00374 * 245.35449 * 4 2 1 6 6 C 1.37876 * 119.99749 * 65.34843 * 4 2 1 7 7 N 1.31518 * 120.00343 * 5.14958 * 6 4 2 8 8 Si 1.86807 * 120.00265 * 185.14783 * 6 4 2 9 9 H 1.48494 * 109.47145 * 84.99953 * 8 6 4 10 10 H 1.48497 * 109.47300 * 205.00262 * 8 6 4 11 11 H 1.48503 * 109.46685 * 325.00509 * 8 6 4 12 12 N 1.46504 * 109.47166 * 120.00872 * 2 1 3 13 13 C 1.34778 * 119.99200 * 274.99549 * 12 2 1 14 14 O 1.21470 * 120.00425 * 359.97438 * 13 12 2 15 15 C 1.48465 * 119.99377 * 180.02562 * 13 12 2 16 16 C 1.39534 * 120.54478 * 179.97438 * 15 13 12 17 17 C 1.38764 * 118.25838 * 179.97438 * 16 15 13 18 18 C 1.50710 * 120.42270 * 180.02562 * 17 16 15 19 19 F 1.39895 * 109.47245 * 300.00354 * 18 17 16 20 20 F 1.39897 * 109.46830 * 60.00398 * 18 17 16 21 21 N 1.32202 * 119.15259 * 0.02562 * 17 16 15 22 22 C 1.31886 * 121.03073 * 359.97438 * 21 17 16 23 23 N 1.31576 * 121.91942 * 359.74012 * 22 21 17 24 24 H 1.08998 * 109.46491 * 294.97171 * 1 2 3 25 25 H 1.08996 * 109.47139 * 54.96852 * 1 2 3 26 26 H 1.08998 * 109.47372 * 174.97377 * 1 2 3 27 27 H 0.96999 * 120.00186 * 179.97438 * 7 6 4 28 28 H 0.96996 * 120.00602 * 94.99213 * 12 2 1 29 29 H 1.07993 * 120.87243 * 359.95816 * 16 15 13 30 30 H 1.09003 * 109.46677 * 180.02562 * 18 17 16 31 31 H 1.08000 * 119.03630 * 180.02562 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5800 -1.6361 -1.1339 6 6 1.7925 -0.1785 -2.4797 7 7 1.2153 0.9977 -2.5939 8 14 2.2876 -1.1284 -4.0102 9 1 1.2109 -2.0864 -4.3680 10 1 2.5006 -0.1809 -5.1336 11 1 3.5448 -1.8730 -3.7454 12 7 2.0184 -0.6908 1.1961 13 6 2.1471 -0.0184 2.3571 14 8 1.8587 1.1603 2.4116 15 6 2.6425 -0.7183 3.5691 16 6 2.7808 -0.0333 4.7768 17 6 3.2475 -0.7340 5.8798 18 6 3.4148 -0.0425 7.2084 19 9 4.3251 1.0113 7.0742 20 9 2.1795 0.4595 7.6316 21 7 3.5434 -2.0160 5.7504 22 6 3.4011 -2.6332 4.5936 23 7 2.9569 -2.0106 3.5230 24 1 -0.3632 0.4339 0.9316 25 1 -0.3633 0.5899 -0.8415 26 1 -0.3634 -1.0237 -0.0900 27 1 1.0469 1.3721 -3.4728 28 1 2.2490 -1.6320 1.1525 29 1 2.5313 1.0148 4.8511 30 1 3.7894 -0.7544 7.9439 31 1 3.6521 -3.6813 4.5243 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931157242.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:19 Heat of formation + Delta-G solvation = -110.436350 kcal Electronic energy + Delta-G solvation = -19976.384447 eV Core-core repulsion = 16313.974883 eV Total energy + Delta-G solvation = -3662.409564 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.087 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -50.19440 -48.19256 -42.49679 -40.47560 -36.88323 -35.63398 -34.30250 -33.67936 -31.07194 -28.83759 -27.36255 -26.46326 -24.81538 -23.14949 -21.55186 -20.05833 -19.51470 -18.45045 -18.42688 -17.92872 -17.32273 -16.81988 -16.74853 -16.56586 -16.42462 -15.80862 -15.48825 -15.03783 -14.90725 -14.54789 -14.44621 -14.04832 -13.83525 -13.07206 -12.98082 -12.73765 -12.63315 -12.40588 -12.35067 -12.19119 -12.15500 -11.50735 -11.18552 -11.10954 -10.65723 -10.63378 -9.94022 -8.21999 -6.37283 -0.88800 -0.54661 1.45549 1.46432 1.55808 1.57243 1.89347 1.99345 2.41473 2.49148 2.76077 3.00992 3.08703 3.10993 3.36582 3.60995 3.80403 3.85783 4.08431 4.31866 4.68857 4.82155 4.92872 4.97801 5.31494 5.36214 5.50570 5.59226 5.77940 5.96527 6.52272 6.67829 6.75099 7.15483 7.35824 8.86966 Molecular weight = 271.09amu Principal moments of inertia in cm(-1) A = 0.035616 B = 0.003959 C = 0.003759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.982723 B = 7071.591185 C = 7447.446453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.265 3.735 3 H 0.011 0.989 4 C -0.550 4.550 5 H 0.074 0.926 6 C 0.018 3.982 7 N -0.918 5.918 8 Si 0.973 3.027 9 H -0.269 1.269 10 H -0.286 1.286 11 H -0.264 1.264 12 N -0.674 5.674 13 C 0.548 3.452 14 O -0.572 6.572 15 C 0.137 3.863 16 C -0.148 4.148 17 C 0.103 3.897 18 C 0.332 3.668 19 F -0.196 7.196 20 F -0.195 7.195 21 N -0.474 5.474 22 C 0.304 3.696 23 N -0.489 5.489 24 H 0.020 0.980 25 H 0.056 0.944 26 H 0.047 0.953 27 H 0.267 0.733 28 H 0.412 0.588 29 H 0.159 0.841 30 H 0.184 0.816 31 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.166 -8.622 18.175 20.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.162 3.838 3 H 0.029 0.971 4 C -0.588 4.588 5 H 0.092 0.908 6 C -0.182 4.182 7 N -0.555 5.555 8 Si 0.797 3.203 9 H -0.194 1.194 10 H -0.212 1.212 11 H -0.189 1.189 12 N -0.321 5.321 13 C 0.331 3.669 14 O -0.452 6.452 15 C -0.011 4.011 16 C -0.171 4.171 17 C -0.048 4.048 18 C 0.278 3.722 19 F -0.177 7.177 20 F -0.177 7.177 21 N -0.189 5.189 22 C 0.017 3.983 23 N -0.206 5.206 24 H 0.039 0.961 25 H 0.075 0.925 26 H 0.066 0.934 27 H 0.076 0.924 28 H 0.249 0.751 29 H 0.176 0.824 30 H 0.200 0.800 31 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges 5.089 -8.572 17.929 20.514 hybrid contribution -0.174 0.721 -1.112 1.337 sum 4.915 -7.852 16.816 19.199 Atomic orbital electron populations 1.21845 0.97708 1.00202 0.98949 1.18575 0.91431 0.92512 0.81254 0.97106 1.21461 1.37309 1.09299 0.90724 0.90823 1.25785 0.94686 0.95463 1.02304 1.70092 1.42957 1.17410 1.25068 0.85348 0.79024 0.78154 0.77772 1.19431 1.21219 1.18859 1.46232 1.62237 1.14723 1.08947 1.18246 0.79012 0.86088 0.83536 1.90749 1.52764 1.16582 1.85099 1.21553 0.94866 0.90906 0.93770 1.22783 0.97761 1.03852 0.92721 1.22421 0.94585 0.91724 0.96029 1.20487 0.74572 0.84773 0.92362 1.93053 1.66970 1.60856 1.96826 1.93052 1.44991 1.89177 1.90444 1.68089 1.14289 1.08106 1.28397 1.26004 0.89110 1.02200 0.80945 1.68412 1.10279 1.08018 1.33844 0.96121 0.92547 0.93429 0.92414 0.75144 0.82364 0.79965 0.72797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.35 9.26 71.98 0.67 -5.69 16 2 C 0.26 13.73 2.43 44.24 0.11 13.84 16 3 H 0.01 0.67 7.56 -2.39 -0.02 0.65 16 4 C -0.55 -29.03 8.67 25.60 0.22 -28.80 16 5 H 0.07 3.65 7.72 -2.91 -0.02 3.63 16 6 C 0.02 0.98 5.29 84.65 0.45 1.42 16 7 N -0.92 -52.46 11.98 21.45 0.26 -52.21 16 8 Si 0.97 41.64 29.54 68.60 2.03 43.67 16 9 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 10 H -0.29 -12.23 7.11 99.48 0.71 -11.52 16 11 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 12 N -0.67 -29.01 5.06 -448.38 -2.27 -31.28 16 13 C 0.55 22.84 7.79 86.97 0.68 23.52 16 14 O -0.57 -27.91 16.09 -3.62 -0.06 -27.97 16 15 C 0.14 4.41 6.79 42.00 0.29 4.70 16 16 C -0.15 -4.14 9.32 22.71 0.21 -3.93 16 17 C 0.10 2.20 6.31 42.63 0.27 2.47 16 18 C 0.33 5.33 5.58 71.24 0.40 5.72 16 19 F -0.20 -3.86 17.27 44.97 0.78 -3.08 16 20 F -0.20 -3.81 17.27 44.97 0.78 -3.03 16 21 N -0.47 -9.00 10.35 -188.11 -1.95 -10.94 16 22 C 0.30 5.67 12.27 180.92 2.22 7.89 16 23 N -0.49 -12.99 9.70 -189.15 -1.84 -14.82 16 24 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 25 H 0.06 3.02 6.84 -2.39 -0.02 3.01 16 26 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 27 H 0.27 14.42 8.31 -92.71 -0.77 13.65 16 28 H 0.41 15.71 7.91 -92.71 -0.73 14.98 16 29 H 0.16 4.59 7.74 -2.91 -0.02 4.57 16 30 H 0.18 1.37 8.12 -2.39 -0.02 1.36 16 31 H 0.26 2.20 8.06 -2.91 -0.02 2.17 16 Total: -1.00 -67.16 290.83 3.69 -63.47 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: 0.46 Total: 15.06 kcal Atomic # 6 Polarization: 15.64 SS G_CDS: 5.51 Total: 21.15 kcal Atomic # 7 Polarization: -103.46 SS G_CDS: -5.79 Total: -109.26 kcal Atomic # 8 Polarization: -27.91 SS G_CDS: -0.06 Total: -27.97 kcal Atomic # 9 Polarization: -7.67 SS G_CDS: 1.55 Total: -6.12 kcal Atomic # 14 Polarization: 41.64 SS G_CDS: 2.03 Total: 43.67 kcal Total: -67.16 3.69 -63.47 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931157242.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.966 kcal (2) G-P(sol) polarization free energy of solvation -67.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds