Wall clock time and date at job start Mon Mar 30 2020 00:50:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.37090 * 120.00199 * 2 1 4 4 H 1.08001 * 120.00214 * 142.82686 * 3 2 1 5 5 C 1.38954 * 120.00180 * 322.82687 * 3 2 1 6 6 N 1.31411 * 120.00102 * 158.40957 * 5 3 2 7 7 Si 1.86804 * 119.99899 * 338.40500 * 5 3 2 8 8 H 1.48500 * 109.47144 * 95.72053 * 7 5 3 9 9 H 1.48501 * 109.47204 * 215.72372 * 7 5 3 10 10 H 1.48499 * 109.47011 * 335.72611 * 7 5 3 11 11 C 1.34783 * 119.99681 * 179.97438 * 2 1 3 12 12 O 1.21287 * 119.99593 * 179.97438 * 11 2 1 13 13 C 1.50705 * 119.99972 * 0.02562 * 11 2 1 14 14 O 1.42900 * 109.46846 * 179.97438 * 13 11 2 15 15 C 1.35940 * 116.99755 * 180.02562 * 14 13 11 16 16 C 1.38728 * 120.02216 * 0.02562 * 15 14 13 17 17 C 1.38163 * 120.01494 * 179.97438 * 16 15 14 18 18 C 1.38405 * 120.05541 * 359.97438 * 17 16 15 19 19 F 1.35097 * 119.98087 * 180.27639 * 18 17 16 20 20 C 1.38651 * 120.03775 * 0.02562 * 18 17 16 21 21 F 1.35102 * 120.00336 * 180.02562 * 20 18 17 22 22 C 1.38357 * 119.98684 * 359.97438 * 20 18 17 23 23 H 1.08995 * 109.47149 * 265.13913 * 1 2 3 24 24 H 1.09001 * 109.47091 * 25.13738 * 1 2 3 25 25 H 1.09002 * 109.47101 * 145.13109 * 1 2 3 26 26 H 0.96999 * 119.99536 * 179.97438 * 6 5 3 27 27 H 1.09003 * 109.47007 * 59.99700 * 13 11 2 28 28 H 1.08996 * 109.46929 * 300.00074 * 13 11 2 29 29 H 1.08004 * 119.99019 * 359.97438 * 16 15 14 30 30 H 1.08006 * 119.97137 * 180.02562 * 17 16 15 31 31 H 1.08005 * 120.02384 * 179.97438 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1872 0.0000 4 1 3.0659 1.2822 0.5651 5 6 1.6676 2.2684 -0.7271 6 7 2.0434 3.4889 -0.4175 7 14 0.4841 1.9867 -2.1447 8 1 -0.9112 2.1586 -1.6663 9 1 0.7619 2.9683 -3.2239 10 1 0.6608 0.6093 -2.6708 11 6 2.1389 -1.1673 0.0005 12 8 3.3517 -1.1673 0.0001 13 6 1.3853 -2.4724 0.0005 14 8 2.3139 -3.5586 0.0005 15 6 1.7942 -4.8147 0.0000 16 6 0.4189 -4.9969 -0.0011 17 6 -0.1091 -6.2737 -0.0022 18 6 0.7331 -7.3721 -0.0027 19 9 0.2152 -8.6198 -0.0094 20 6 2.1079 -7.1925 -0.0017 21 9 2.9293 -8.2652 -0.0028 22 6 2.6384 -5.9147 -0.0006 23 1 -0.3633 -0.0871 1.0239 24 1 -0.3633 0.9303 -0.4365 25 1 -0.3633 -0.8432 -0.5875 26 1 1.7065 4.2436 -0.9254 27 1 0.7589 -2.5302 -0.8897 28 1 0.7583 -2.5299 0.8902 29 1 -0.2391 -4.1405 -0.0011 30 1 -1.1799 -6.4147 -0.0034 31 1 3.7093 -5.7742 0.0007 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931242977.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:39 Heat of formation + Delta-G solvation = -112.745485 kcal Electronic energy + Delta-G solvation = -19956.406307 eV Core-core repulsion = 16261.603860 eV Total energy + Delta-G solvation = -3694.802447 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.081 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.61076 -48.67682 -40.36488 -38.72062 -37.04647 -34.91808 -32.24190 -31.35743 -29.85530 -28.34223 -26.57577 -24.68816 -23.55035 -22.45893 -19.40168 -18.84503 -17.62387 -17.41998 -17.22589 -16.63040 -16.58881 -16.11509 -15.70365 -15.45891 -15.10066 -14.66893 -14.64018 -14.20737 -14.13387 -13.44346 -12.98389 -12.79112 -12.70540 -12.57603 -12.28063 -11.95589 -11.87087 -11.30281 -11.00329 -10.82061 -10.51202 -10.04824 -9.31595 -9.21608 -8.69832 -8.38295 -7.92327 -6.51921 -4.10923 0.67833 0.82725 2.75633 2.91654 3.11692 3.13642 3.15394 3.47758 3.65917 4.02106 4.15503 4.25015 4.43899 4.56795 4.80297 4.86701 4.92779 5.12301 5.24985 5.29628 5.51273 5.59613 5.61820 5.69687 5.90450 5.92171 6.10482 6.37432 7.11000 7.40650 8.10767 8.34320 8.79965 9.14638 9.54916 10.59604 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.040792 B = 0.003875 C = 0.003665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.244846 B = 7223.528130 C = 7638.982607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.463 5.463 3 C -0.319 4.319 4 H 0.109 0.891 5 C 0.061 3.939 6 N -0.858 5.858 7 Si 0.880 3.120 8 H -0.274 1.274 9 H -0.285 1.285 10 H -0.265 1.265 11 C 0.461 3.539 12 O -0.541 6.541 13 C 0.042 3.958 14 O -0.275 6.275 15 C 0.162 3.838 16 C -0.196 4.196 17 C -0.081 4.081 18 C 0.018 3.982 19 F -0.134 7.134 20 C 0.111 3.889 21 F -0.125 7.125 22 C -0.164 4.164 23 H 0.057 0.943 24 H 0.070 0.930 25 H 0.053 0.947 26 H 0.276 0.724 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.147 0.853 30 H 0.148 0.852 31 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.592 -16.782 0.029 18.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.187 5.187 3 C -0.446 4.446 4 H 0.126 0.874 5 C -0.145 4.145 6 N -0.494 5.494 7 Si 0.708 3.292 8 H -0.201 1.201 9 H -0.212 1.212 10 H -0.189 1.189 11 C 0.248 3.752 12 O -0.421 6.421 13 C -0.037 4.037 14 O -0.186 6.186 15 C 0.114 3.886 16 C -0.215 4.215 17 C -0.100 4.100 18 C -0.002 4.002 19 F -0.112 7.112 20 C 0.090 3.910 21 F -0.103 7.103 22 C -0.184 4.184 23 H 0.075 0.925 24 H 0.089 0.911 25 H 0.072 0.928 26 H 0.087 0.913 27 H 0.103 0.897 28 H 0.103 0.897 29 H 0.165 0.835 30 H 0.166 0.834 31 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -7.740 -16.561 -0.003 18.281 hybrid contribution -0.981 -0.322 -0.798 1.304 sum -8.721 -16.883 -0.800 19.019 Atomic orbital electron populations 1.22095 0.83163 1.01960 1.01314 1.43562 1.04107 1.05101 1.65915 1.19062 1.10615 0.84814 1.30104 0.87394 1.25375 0.97477 0.94724 0.96972 1.69739 1.43400 0.98135 1.38103 0.86922 0.80134 0.79155 0.83027 1.20107 1.21177 1.18901 1.19665 0.88307 0.83696 0.83560 1.90622 1.13362 1.86277 1.51850 1.22840 0.92127 0.86049 1.02674 1.86260 1.34783 1.10764 1.86804 1.18788 0.91231 0.85454 0.93112 1.21280 0.94146 0.98223 1.07884 1.20820 1.00425 0.90296 0.98423 1.17482 0.90031 0.80834 1.11871 1.91504 1.86891 1.38232 1.94600 1.17214 0.86137 0.83848 1.03775 1.91541 1.71657 1.53345 1.93748 1.20202 1.02016 0.88027 1.08105 0.92476 0.91128 0.92836 0.91341 0.89687 0.89708 0.83527 0.83384 0.82579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.01 8.78 59.85 0.53 1.54 16 2 N -0.46 -10.57 2.59 -122.19 -0.32 -10.88 16 3 C -0.32 -8.73 9.37 -14.94 -0.14 -8.87 16 4 H 0.11 3.34 7.90 -52.49 -0.41 2.93 16 5 C 0.06 1.62 5.29 -17.47 -0.09 1.53 16 6 N -0.86 -23.97 13.96 55.50 0.77 -23.20 16 7 Si 0.88 19.39 24.96 -169.99 -4.24 15.15 16 8 H -0.27 -5.51 6.69 56.52 0.38 -5.13 16 9 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 10 H -0.26 -5.73 7.11 56.52 0.40 -5.33 16 11 C 0.46 10.25 7.70 -10.98 -0.08 10.16 16 12 O -0.54 -14.60 16.36 -14.36 -0.23 -14.83 16 13 C 0.04 0.65 3.84 36.01 0.14 0.79 16 14 O -0.28 -4.55 9.67 -39.46 -0.38 -4.93 16 15 C 0.16 2.11 6.68 -39.24 -0.26 1.85 16 16 C -0.20 -2.01 9.04 -39.43 -0.36 -2.37 16 17 C -0.08 -0.76 10.02 -39.55 -0.40 -1.15 16 18 C 0.02 0.20 7.30 -39.37 -0.29 -0.08 16 19 F -0.13 -1.60 17.18 2.25 0.04 -1.56 16 20 C 0.11 1.34 7.30 -39.39 -0.29 1.05 16 21 F -0.12 -1.58 17.18 2.25 0.04 -1.54 16 22 C -0.16 -2.04 9.96 -39.38 -0.39 -2.43 16 23 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 24 H 0.07 1.33 3.42 -51.93 -0.18 1.15 16 25 H 0.05 0.72 6.64 -51.93 -0.34 0.37 16 26 H 0.28 7.10 8.31 -40.82 -0.34 6.76 16 27 H 0.09 1.09 6.93 -51.93 -0.36 0.73 16 28 H 0.09 1.04 7.63 -51.93 -0.40 0.65 16 29 H 0.15 1.18 6.29 -52.48 -0.33 0.85 16 30 H 0.15 0.98 8.06 -52.48 -0.42 0.55 16 31 H 0.16 1.84 8.06 -52.48 -0.42 1.41 16 LS Contribution 279.48 15.07 4.21 4.21 Total: -1.00 -31.99 279.48 -4.20 -36.18 By element: Atomic # 1 Polarization: 1.83 SS G_CDS: -2.45 Total: -0.62 kcal Atomic # 6 Polarization: 3.65 SS G_CDS: -1.64 Total: 2.02 kcal Atomic # 7 Polarization: -34.54 SS G_CDS: 0.46 Total: -34.08 kcal Atomic # 8 Polarization: -19.15 SS G_CDS: -0.62 Total: -19.76 kcal Atomic # 9 Polarization: -3.17 SS G_CDS: 0.08 Total: -3.09 kcal Atomic # 14 Polarization: 19.39 SS G_CDS: -4.24 Total: 15.15 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -31.99 -4.20 -36.18 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931242977.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.563 kcal (2) G-P(sol) polarization free energy of solvation -31.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds