Wall clock time and date at job start Mon Mar 30 2020 00:50:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.37090 * 120.00199 * 2 1 4 4 H 1.08001 * 120.00214 * 142.82686 * 3 2 1 5 5 C 1.38954 * 120.00180 * 322.82687 * 3 2 1 6 6 N 1.31411 * 120.00102 * 158.40957 * 5 3 2 7 7 Si 1.86804 * 119.99899 * 338.40500 * 5 3 2 8 8 H 1.48500 * 109.47144 * 95.72053 * 7 5 3 9 9 H 1.48501 * 109.47204 * 215.72372 * 7 5 3 10 10 H 1.48499 * 109.47011 * 335.72611 * 7 5 3 11 11 C 1.34783 * 119.99681 * 179.97438 * 2 1 3 12 12 O 1.21287 * 119.99593 * 179.97438 * 11 2 1 13 13 C 1.50705 * 119.99972 * 0.02562 * 11 2 1 14 14 O 1.42900 * 109.46846 * 179.97438 * 13 11 2 15 15 C 1.35940 * 116.99755 * 180.02562 * 14 13 11 16 16 C 1.38728 * 120.02216 * 0.02562 * 15 14 13 17 17 C 1.38163 * 120.01494 * 179.97438 * 16 15 14 18 18 C 1.38405 * 120.05541 * 359.97438 * 17 16 15 19 19 F 1.35097 * 119.98087 * 180.27639 * 18 17 16 20 20 C 1.38651 * 120.03775 * 0.02562 * 18 17 16 21 21 F 1.35102 * 120.00336 * 180.02562 * 20 18 17 22 22 C 1.38357 * 119.98684 * 359.97438 * 20 18 17 23 23 H 1.08995 * 109.47149 * 265.13913 * 1 2 3 24 24 H 1.09001 * 109.47091 * 25.13738 * 1 2 3 25 25 H 1.09002 * 109.47101 * 145.13109 * 1 2 3 26 26 H 0.96999 * 119.99536 * 179.97438 * 6 5 3 27 27 H 1.09003 * 109.47007 * 59.99700 * 13 11 2 28 28 H 1.08996 * 109.46929 * 300.00074 * 13 11 2 29 29 H 1.08004 * 119.99019 * 359.97438 * 16 15 14 30 30 H 1.08006 * 119.97137 * 180.02562 * 17 16 15 31 31 H 1.08005 * 120.02384 * 179.97438 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1872 0.0000 4 1 3.0659 1.2822 0.5651 5 6 1.6676 2.2684 -0.7271 6 7 2.0434 3.4889 -0.4175 7 14 0.4841 1.9867 -2.1447 8 1 -0.9112 2.1586 -1.6663 9 1 0.7619 2.9683 -3.2239 10 1 0.6608 0.6093 -2.6708 11 6 2.1389 -1.1673 0.0005 12 8 3.3517 -1.1673 0.0001 13 6 1.3853 -2.4724 0.0005 14 8 2.3139 -3.5586 0.0005 15 6 1.7942 -4.8147 0.0000 16 6 0.4189 -4.9969 -0.0011 17 6 -0.1091 -6.2737 -0.0022 18 6 0.7331 -7.3721 -0.0027 19 9 0.2152 -8.6198 -0.0094 20 6 2.1079 -7.1925 -0.0017 21 9 2.9293 -8.2652 -0.0028 22 6 2.6384 -5.9147 -0.0006 23 1 -0.3633 -0.0871 1.0239 24 1 -0.3633 0.9303 -0.4365 25 1 -0.3633 -0.8432 -0.5875 26 1 1.7065 4.2436 -0.9254 27 1 0.7589 -2.5302 -0.8897 28 1 0.7583 -2.5299 0.8902 29 1 -0.2391 -4.1405 -0.0011 30 1 -1.1799 -6.4147 -0.0034 31 1 3.7093 -5.7742 0.0007 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931242977.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:39 Heat of formation + Delta-G solvation = -134.404821 kcal Electronic energy + Delta-G solvation = -19957.345526 eV Core-core repulsion = 16261.603860 eV Total energy + Delta-G solvation = -3695.741666 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.081 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -50.52550 -49.58737 -41.46007 -40.25209 -38.11477 -36.72170 -34.19886 -32.23884 -30.86375 -29.63249 -28.04694 -26.39584 -24.43287 -23.45732 -20.99645 -19.82828 -19.10353 -18.56995 -18.40487 -17.90195 -17.64637 -17.41292 -17.09902 -16.75220 -16.03177 -16.01340 -15.64310 -15.50943 -15.02037 -14.90587 -14.56541 -14.16432 -14.04919 -13.80468 -13.50629 -13.24515 -13.18436 -12.65312 -12.27033 -12.20181 -11.90875 -11.80473 -11.06670 -10.45660 -10.15903 -9.76389 -9.30301 -8.53045 -6.18517 -0.16773 -0.02667 1.21975 1.35746 1.48630 1.64006 1.82937 2.18309 2.29334 2.71145 2.88325 2.98580 3.32240 3.51637 3.73130 3.78915 3.99628 4.05315 4.16125 4.20773 4.36001 4.64925 4.71759 4.80733 4.85808 4.91961 5.06104 5.45702 5.53543 5.99811 6.15883 6.52715 6.89139 7.21654 7.77190 8.64093 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.040792 B = 0.003875 C = 0.003665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.244846 B = 7223.528130 C = 7638.982607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 N -0.474 5.474 3 C -0.343 4.343 4 H 0.041 0.959 5 C 0.011 3.989 6 N -0.910 5.910 7 Si 0.958 3.042 8 H -0.231 1.231 9 H -0.294 1.294 10 H -0.252 1.252 11 C 0.450 3.550 12 O -0.610 6.610 13 C 0.054 3.946 14 O -0.312 6.312 15 C 0.143 3.857 16 C -0.180 4.180 17 C -0.064 4.064 18 C 0.014 3.986 19 F -0.138 7.138 20 C 0.096 3.904 21 F -0.134 7.134 22 C -0.175 4.175 23 H 0.085 0.915 24 H 0.058 0.942 25 H 0.107 0.893 26 H 0.282 0.718 27 H 0.128 0.872 28 H 0.129 0.871 29 H 0.182 0.818 30 H 0.187 0.813 31 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.130 -18.512 -1.045 22.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 N -0.198 5.198 3 C -0.471 4.471 4 H 0.059 0.941 5 C -0.192 4.192 6 N -0.547 5.547 7 Si 0.780 3.220 8 H -0.156 1.156 9 H -0.222 1.222 10 H -0.176 1.176 11 C 0.239 3.761 12 O -0.494 6.494 13 C -0.023 4.023 14 O -0.225 6.225 15 C 0.097 3.903 16 C -0.198 4.198 17 C -0.083 4.083 18 C -0.007 4.007 19 F -0.117 7.117 20 C 0.076 3.924 21 F -0.113 7.113 22 C -0.195 4.195 23 H 0.104 0.896 24 H 0.076 0.924 25 H 0.126 0.874 26 H 0.092 0.908 27 H 0.145 0.855 28 H 0.146 0.854 29 H 0.199 0.801 30 H 0.204 0.796 31 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -12.330 -18.313 -1.051 22.102 hybrid contribution 0.520 0.161 -0.369 0.658 sum -11.809 -18.153 -1.420 21.702 Atomic orbital electron populations 1.22442 0.79140 1.03578 1.04257 1.43690 1.06512 1.03786 1.65764 1.18647 1.09767 0.87770 1.30887 0.94143 1.26272 0.99987 0.93642 0.99294 1.69872 1.45826 0.99432 1.39593 0.85716 0.79324 0.79161 0.77752 1.15570 1.22155 1.17580 1.20876 0.88029 0.85961 0.81250 1.90584 1.16753 1.87700 1.54327 1.22754 0.90903 0.82080 1.06594 1.86195 1.36267 1.12124 1.87876 1.18916 0.92708 0.83880 0.94815 1.21617 0.92841 0.99691 1.05668 1.21205 1.01940 0.88990 0.96148 1.17750 0.89825 0.81366 1.11722 1.91497 1.86814 1.38754 1.94622 1.17332 0.86714 0.83461 1.04889 1.91512 1.72112 1.53693 1.93959 1.20211 1.02022 0.88504 1.08763 0.89642 0.92372 0.87437 0.90850 0.85501 0.85373 0.80052 0.79585 0.83417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.41 8.78 127.77 1.12 2.53 16 2 N -0.47 -21.16 2.59 -658.88 -1.70 -22.87 16 3 C -0.34 -19.57 9.37 84.04 0.79 -18.78 16 4 H 0.04 2.76 7.90 -2.91 -0.02 2.74 16 5 C 0.01 0.57 5.29 84.93 0.45 1.02 16 6 N -0.91 -52.80 13.96 21.66 0.30 -52.50 16 7 Si 0.96 38.71 24.96 68.60 1.71 40.42 16 8 H -0.23 -7.78 6.69 99.48 0.67 -7.11 16 9 H -0.29 -12.22 7.11 99.48 0.71 -11.52 16 10 H -0.25 -9.60 7.11 99.48 0.71 -8.89 16 11 C 0.45 19.69 7.70 87.66 0.68 20.37 16 12 O -0.61 -34.42 16.36 15.98 0.26 -34.16 16 13 C 0.05 1.46 3.84 71.24 0.27 1.73 16 14 O -0.31 -9.73 9.67 -73.84 -0.71 -10.45 16 15 C 0.14 3.36 6.68 22.49 0.15 3.51 16 16 C -0.18 -2.71 9.04 22.37 0.20 -2.51 16 17 C -0.06 -0.88 10.02 22.29 0.22 -0.65 16 18 C 0.01 0.27 7.30 22.41 0.16 0.43 16 19 F -0.14 -2.95 17.18 44.97 0.77 -2.18 16 20 C 0.10 2.23 7.30 22.40 0.16 2.39 16 21 F -0.13 -3.39 17.18 44.97 0.77 -2.62 16 22 C -0.18 -4.25 9.96 22.40 0.22 -4.03 16 23 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 24 H 0.06 1.90 3.42 -2.39 -0.01 1.90 16 25 H 0.11 2.06 6.64 -2.39 -0.02 2.04 16 26 H 0.28 14.87 8.31 -92.71 -0.77 14.10 16 27 H 0.13 2.37 6.93 -2.39 -0.02 2.35 16 28 H 0.13 2.36 7.63 -2.39 -0.02 2.34 16 29 H 0.18 1.45 6.29 -2.91 -0.02 1.44 16 30 H 0.19 1.17 8.06 -2.91 -0.02 1.14 16 31 H 0.15 3.66 8.06 -2.91 -0.02 3.64 16 Total: -1.00 -79.08 279.48 6.98 -72.10 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: 1.14 Total: 6.24 kcal Atomic # 6 Polarization: 1.58 SS G_CDS: 4.43 Total: 6.02 kcal Atomic # 7 Polarization: -73.96 SS G_CDS: -1.40 Total: -75.36 kcal Atomic # 8 Polarization: -44.15 SS G_CDS: -0.45 Total: -44.61 kcal Atomic # 9 Polarization: -6.34 SS G_CDS: 1.55 Total: -4.80 kcal Atomic # 14 Polarization: 38.71 SS G_CDS: 1.71 Total: 40.42 kcal Total: -79.08 6.98 -72.10 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931242977.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.308 kcal (2) G-P(sol) polarization free energy of solvation -79.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds