Wall clock time and date at job start Mon Mar 30 2020 01:21:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.47061 * 2 1 4 4 C 1.50696 * 109.47023 * 119.99810 * 2 1 3 5 5 H 1.08003 * 119.99927 * 114.51130 * 4 2 1 6 6 C 1.37878 * 120.00384 * 294.50865 * 4 2 1 7 7 N 1.31509 * 119.99642 * 0.68829 * 6 4 2 8 8 Si 1.86800 * 120.00343 * 180.95860 * 6 4 2 9 9 H 1.48497 * 109.47195 * 264.73226 * 8 6 4 10 10 H 1.48507 * 109.46966 * 24.73487 * 8 6 4 11 11 H 1.48496 * 109.46899 * 144.72857 * 8 6 4 12 12 N 1.46503 * 109.46870 * 239.99886 * 2 1 3 13 13 C 1.34770 * 120.00095 * 85.00281 * 12 2 1 14 14 O 1.21595 * 120.00132 * 359.97438 * 13 12 2 15 15 N 1.34779 * 120.00307 * 179.97438 * 13 12 2 16 16 C 1.40081 * 120.00150 * 184.86696 * 15 13 12 17 17 C 1.38765 * 120.44922 * 143.74201 * 16 15 13 18 18 N 1.31881 * 120.75277 * 179.97438 * 17 16 15 19 19 C 1.31997 * 121.78156 * 359.97438 * 18 17 16 20 20 F 1.35099 * 119.59071 * 179.97438 * 19 18 17 21 21 C 1.38762 * 120.81787 * 0.02562 * 19 18 17 22 22 F 1.35099 * 120.41436 * 180.02562 * 21 19 18 23 23 C 1.38641 * 119.16686 * 359.72279 * 21 19 18 24 24 H 1.08996 * 109.46957 * 296.70854 * 1 2 3 25 25 H 1.08999 * 109.46906 * 56.70978 * 1 2 3 26 26 H 1.08998 * 109.46745 * 176.70525 * 1 2 3 27 27 H 0.97005 * 120.00323 * 180.27254 * 7 6 4 28 28 H 0.97000 * 119.99831 * 264.99564 * 12 2 1 29 29 H 0.96999 * 119.99675 * 4.86400 * 15 13 12 30 30 H 1.08010 * 119.62191 * 0.02562 * 17 16 15 31 31 H 1.07998 * 120.81320 * 180.29946 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.5782 -1.6373 1.1339 6 6 1.7952 -0.1770 2.4796 7 7 1.1189 0.9446 2.5980 8 14 2.4409 -1.0436 4.0032 9 1 1.3763 -1.9114 4.5677 10 1 3.6162 -1.8751 3.6391 11 1 2.8437 -0.0330 5.0140 12 7 2.0183 -0.6907 -1.1962 13 6 2.1471 -0.0184 -2.3571 14 8 1.8575 1.1613 -2.4119 15 7 2.5968 -0.6536 -3.4575 16 6 2.8276 0.0664 -4.6367 17 6 3.8903 -0.2638 -5.4657 18 7 4.1128 0.4097 -6.5775 19 6 3.3426 1.4160 -6.9467 20 9 3.6115 2.0758 -8.0946 21 6 2.2607 1.8054 -6.1700 22 9 1.4774 2.8362 -6.5559 23 6 1.9899 1.1191 -4.9961 24 1 -0.3633 0.4619 0.9180 25 1 -0.3633 0.5641 -0.8590 26 1 -0.3633 -1.0260 -0.0591 27 1 0.9553 1.3220 3.4765 28 1 2.2491 -1.6318 -1.1526 29 1 2.7606 -1.6093 -3.4328 30 1 4.5421 -1.0823 -5.1977 31 1 1.1519 1.3965 -4.3739 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000934400120.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:29 Heat of formation + Delta-G solvation = -76.141948 kcal Electronic energy + Delta-G solvation = -19994.397556 eV Core-core repulsion = 16333.475108 eV Total energy + Delta-G solvation = -3660.922447 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.087 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -49.59149 -48.68857 -40.82264 -39.18903 -35.56706 -34.55642 -32.70540 -31.99435 -30.07002 -28.46969 -25.35198 -24.50668 -23.66618 -21.57366 -20.18216 -18.89178 -18.37270 -18.17811 -17.59234 -16.73445 -16.23144 -15.90322 -15.19393 -15.16531 -15.09855 -14.75803 -14.28689 -14.08133 -13.59300 -13.23215 -13.17129 -12.86358 -12.53756 -11.91658 -11.23093 -11.13494 -10.92175 -10.81770 -10.45342 -10.37608 -10.32239 -9.80898 -9.45300 -9.16574 -8.71487 -8.49023 -8.04820 -6.23081 -4.32321 0.49731 0.77593 2.68766 3.12000 3.18065 3.18455 3.26337 3.28070 3.58053 3.89673 4.18396 4.26889 4.52279 4.61765 4.88883 5.11173 5.15918 5.48736 5.80147 6.11004 6.53884 6.59894 6.79503 6.85782 7.01489 7.23386 7.25991 7.48841 7.64477 7.79557 7.98278 8.53173 8.68098 8.97094 9.35394 10.84209 Molecular weight = 271.09amu Principal moments of inertia in cm(-1) A = 0.041654 B = 0.003717 C = 0.003543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.046326 B = 7531.304017 C = 7902.051019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.278 3.722 3 H 0.055 0.945 4 C -0.537 4.537 5 H 0.062 0.938 6 C 0.068 3.932 7 N -0.882 5.882 8 Si 0.903 3.097 9 H -0.280 1.280 10 H -0.273 1.273 11 H -0.284 1.284 12 N -0.712 5.712 13 C 0.691 3.309 14 O -0.579 6.579 15 N -0.688 5.688 16 C 0.156 3.844 17 C 0.094 3.906 18 N -0.466 5.466 19 C 0.249 3.751 20 F -0.106 7.106 21 C 0.055 3.945 22 F -0.117 7.117 23 C -0.090 4.090 24 H 0.084 0.916 25 H 0.017 0.983 26 H 0.027 0.973 27 H 0.266 0.734 28 H 0.389 0.611 29 H 0.411 0.589 30 H 0.177 0.823 31 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.675 -4.754 -13.962 14.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.176 3.824 3 H 0.073 0.927 4 C -0.575 4.575 5 H 0.080 0.920 6 C -0.136 4.136 7 N -0.518 5.518 8 Si 0.730 3.270 9 H -0.206 1.206 10 H -0.198 1.198 11 H -0.210 1.210 12 N -0.362 5.362 13 C 0.392 3.608 14 O -0.457 6.457 15 N -0.337 5.337 16 C 0.056 3.944 17 C -0.067 4.067 18 N -0.179 5.179 19 C 0.093 3.907 20 F -0.086 7.086 21 C 0.031 3.969 22 F -0.096 7.096 23 C -0.119 4.119 24 H 0.103 0.897 25 H 0.037 0.963 26 H 0.046 0.954 27 H 0.076 0.924 28 H 0.221 0.779 29 H 0.247 0.753 30 H 0.194 0.806 31 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 2.978 -3.695 -14.275 15.043 hybrid contribution -0.250 -0.777 1.161 1.420 sum 2.728 -4.473 -13.114 14.122 Atomic orbital electron populations 1.22078 0.98517 0.98711 1.01112 1.18778 0.90780 0.94099 0.78696 0.92739 1.21163 1.37088 1.08986 0.90303 0.91980 1.24887 0.94769 0.94890 0.99086 1.69927 1.38844 1.18771 1.24299 0.86415 0.79114 0.79217 0.82247 1.20561 1.19784 1.20979 1.45913 1.67858 1.13492 1.08936 1.16193 0.78818 0.85462 0.80367 1.90907 1.56373 1.14322 1.84078 1.42805 1.70665 1.11536 1.08695 1.18336 0.93727 0.94477 0.87887 1.22411 0.94591 1.00098 0.89569 1.67037 1.27610 1.05867 1.17362 1.18020 0.93608 0.93393 0.85631 1.91637 1.93485 1.77793 1.45637 1.18239 0.92451 0.90359 0.95831 1.91565 1.72487 1.55010 1.90501 1.21862 1.01008 0.95311 0.93704 0.89722 0.96347 0.95354 0.92425 0.77871 0.75265 0.80588 0.80684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.36 9.35 37.16 0.35 -3.01 16 2 C 0.28 6.58 2.46 -69.08 -0.17 6.41 16 3 H 0.05 1.52 7.58 -51.93 -0.39 1.12 16 4 C -0.54 -13.38 8.67 -34.44 -0.30 -13.68 16 5 H 0.06 1.46 7.72 -52.48 -0.41 1.06 16 6 C 0.07 1.74 5.32 -17.82 -0.09 1.65 16 7 N -0.88 -23.98 11.69 55.43 0.65 -23.33 16 8 Si 0.90 19.79 29.54 -169.99 -5.02 14.77 16 9 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 10 H -0.27 -5.87 7.11 56.52 0.40 -5.46 16 11 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 12 N -0.71 -13.09 5.07 -59.81 -0.30 -13.39 16 13 C 0.69 12.18 8.38 -86.92 -0.73 11.45 16 14 O -0.58 -12.56 13.58 5.28 0.07 -12.48 16 15 N -0.69 -8.39 5.36 -14.12 -0.08 -8.46 16 16 C 0.16 1.93 6.29 -83.52 -0.53 1.41 16 17 C 0.09 1.00 11.12 -17.34 -0.19 0.80 16 18 N -0.47 -5.92 10.36 -13.39 -0.14 -6.06 16 19 C 0.25 3.36 8.41 -17.29 -0.15 3.21 16 20 F -0.11 -1.45 17.21 2.25 0.04 -1.41 16 21 C 0.05 0.75 7.35 -39.24 -0.29 0.46 16 22 F -0.12 -1.65 17.19 2.25 0.04 -1.61 16 23 C -0.09 -1.26 8.78 -39.06 -0.34 -1.60 16 24 H 0.08 2.15 6.43 -51.93 -0.33 1.82 16 25 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 28 H 0.39 5.87 8.54 -40.82 -0.35 5.52 16 29 H 0.41 3.34 8.84 -40.82 -0.36 2.98 16 30 H 0.18 1.22 8.06 -52.48 -0.42 0.80 16 31 H 0.18 2.75 6.43 -52.49 -0.34 2.41 16 LS Contribution 285.65 15.07 4.30 4.30 Total: -1.00 -29.75 285.65 -5.46 -35.21 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -2.58 Total: 5.37 kcal Atomic # 6 Polarization: 9.54 SS G_CDS: -2.44 Total: 7.10 kcal Atomic # 7 Polarization: -51.38 SS G_CDS: 0.13 Total: -51.25 kcal Atomic # 8 Polarization: -12.56 SS G_CDS: 0.07 Total: -12.48 kcal Atomic # 9 Polarization: -3.10 SS G_CDS: 0.08 Total: -3.02 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -5.02 Total: 14.77 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -29.75 -5.46 -35.21 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934400120.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.934 kcal (2) G-P(sol) polarization free energy of solvation -29.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds