Wall clock time and date at job start Mon Mar 30 2020 01:21:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.47061 * 2 1 4 4 C 1.50696 * 109.47023 * 119.99810 * 2 1 3 5 5 H 1.08003 * 119.99927 * 114.51130 * 4 2 1 6 6 C 1.37878 * 120.00384 * 294.50865 * 4 2 1 7 7 N 1.31509 * 119.99642 * 0.68829 * 6 4 2 8 8 Si 1.86800 * 120.00343 * 180.95860 * 6 4 2 9 9 H 1.48497 * 109.47195 * 264.73226 * 8 6 4 10 10 H 1.48507 * 109.46966 * 24.73487 * 8 6 4 11 11 H 1.48496 * 109.46899 * 144.72857 * 8 6 4 12 12 N 1.46503 * 109.46870 * 239.99886 * 2 1 3 13 13 C 1.34770 * 120.00095 * 85.00281 * 12 2 1 14 14 O 1.21595 * 120.00132 * 359.97438 * 13 12 2 15 15 N 1.34779 * 120.00307 * 179.97438 * 13 12 2 16 16 C 1.40081 * 120.00150 * 184.86696 * 15 13 12 17 17 C 1.38765 * 120.44922 * 143.74201 * 16 15 13 18 18 N 1.31881 * 120.75277 * 179.97438 * 17 16 15 19 19 C 1.31997 * 121.78156 * 359.97438 * 18 17 16 20 20 F 1.35099 * 119.59071 * 179.97438 * 19 18 17 21 21 C 1.38762 * 120.81787 * 0.02562 * 19 18 17 22 22 F 1.35099 * 120.41436 * 180.02562 * 21 19 18 23 23 C 1.38641 * 119.16686 * 359.72279 * 21 19 18 24 24 H 1.08996 * 109.46957 * 296.70854 * 1 2 3 25 25 H 1.08999 * 109.46906 * 56.70978 * 1 2 3 26 26 H 1.08998 * 109.46745 * 176.70525 * 1 2 3 27 27 H 0.97005 * 120.00323 * 180.27254 * 7 6 4 28 28 H 0.97000 * 119.99831 * 264.99564 * 12 2 1 29 29 H 0.96999 * 119.99675 * 4.86400 * 15 13 12 30 30 H 1.08010 * 119.62191 * 0.02562 * 17 16 15 31 31 H 1.07998 * 120.81320 * 180.29946 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.5782 -1.6373 1.1339 6 6 1.7952 -0.1770 2.4796 7 7 1.1189 0.9446 2.5980 8 14 2.4409 -1.0436 4.0032 9 1 1.3763 -1.9114 4.5677 10 1 3.6162 -1.8751 3.6391 11 1 2.8437 -0.0330 5.0140 12 7 2.0183 -0.6907 -1.1962 13 6 2.1471 -0.0184 -2.3571 14 8 1.8575 1.1613 -2.4119 15 7 2.5968 -0.6536 -3.4575 16 6 2.8276 0.0664 -4.6367 17 6 3.8903 -0.2638 -5.4657 18 7 4.1128 0.4097 -6.5775 19 6 3.3426 1.4160 -6.9467 20 9 3.6115 2.0758 -8.0946 21 6 2.2607 1.8054 -6.1700 22 9 1.4774 2.8362 -6.5559 23 6 1.9899 1.1191 -4.9961 24 1 -0.3633 0.4619 0.9180 25 1 -0.3633 0.5641 -0.8590 26 1 -0.3633 -1.0260 -0.0591 27 1 0.9553 1.3220 3.4765 28 1 2.2491 -1.6318 -1.1526 29 1 2.7606 -1.6093 -3.4328 30 1 4.5421 -1.0823 -5.1977 31 1 1.1519 1.3965 -4.3739 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000934400120.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:29 Heat of formation + Delta-G solvation = -97.369674 kcal Electronic energy + Delta-G solvation = -19995.318059 eV Core-core repulsion = 16333.475108 eV Total energy + Delta-G solvation = -3661.842951 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.087 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -50.67011 -49.76962 -41.98628 -40.47510 -37.09950 -35.99924 -34.41867 -33.16079 -31.46474 -29.92903 -27.29883 -25.58623 -24.81115 -23.09687 -21.74360 -20.24973 -19.48796 -19.28079 -18.84451 -17.89538 -17.69892 -17.32657 -16.74372 -16.39279 -16.25959 -16.07882 -15.66478 -15.22841 -15.18266 -14.43154 -14.32205 -14.21773 -13.93998 -13.71983 -12.98640 -12.91269 -12.71408 -12.33103 -12.13800 -12.01107 -11.57404 -11.11066 -11.05576 -10.64529 -10.61109 -9.91865 -9.35621 -8.17384 -6.33255 -0.52435 -0.27595 1.44571 1.47887 1.51832 1.59746 1.95106 2.13729 2.36072 2.43147 2.85984 3.12827 3.15952 3.40679 3.57675 3.73431 4.22246 4.48244 4.74227 4.76727 4.93652 5.01100 5.10325 5.37593 5.46130 5.58484 5.62530 5.81212 6.06247 6.16350 6.26358 6.75770 7.15749 7.35138 7.59345 8.90394 Molecular weight = 271.09amu Principal moments of inertia in cm(-1) A = 0.041654 B = 0.003717 C = 0.003543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.046326 B = 7531.304017 C = 7902.051019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.286 3.714 3 H 0.004 0.996 4 C -0.543 4.543 5 H 0.078 0.922 6 C 0.015 3.985 7 N -0.919 5.919 8 Si 0.970 3.030 9 H -0.274 1.274 10 H -0.260 1.260 11 H -0.290 1.290 12 N -0.706 5.706 13 C 0.693 3.307 14 O -0.623 6.623 15 N -0.661 5.661 16 C 0.149 3.851 17 C 0.125 3.875 18 N -0.473 5.473 19 C 0.248 3.752 20 F -0.109 7.109 21 C 0.046 3.954 22 F -0.125 7.125 23 C -0.100 4.100 24 H 0.057 0.943 25 H 0.015 0.985 26 H 0.046 0.954 27 H 0.265 0.735 28 H 0.408 0.592 29 H 0.435 0.565 30 H 0.224 0.776 31 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.191 -7.317 -14.352 16.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.182 3.818 3 H 0.022 0.978 4 C -0.582 4.582 5 H 0.096 0.904 6 C -0.186 4.186 7 N -0.557 5.557 8 Si 0.795 3.205 9 H -0.200 1.200 10 H -0.184 1.184 11 H -0.217 1.217 12 N -0.358 5.358 13 C 0.394 3.606 14 O -0.504 6.504 15 N -0.312 5.312 16 C 0.049 3.951 17 C -0.036 4.036 18 N -0.186 5.186 19 C 0.093 3.907 20 F -0.088 7.088 21 C 0.022 3.978 22 F -0.103 7.103 23 C -0.129 4.129 24 H 0.076 0.924 25 H 0.034 0.966 26 H 0.065 0.935 27 H 0.074 0.926 28 H 0.244 0.756 29 H 0.276 0.724 30 H 0.241 0.759 31 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 4.520 -6.326 -14.730 16.656 hybrid contribution -0.704 0.026 1.199 1.391 sum 3.816 -6.300 -13.531 15.406 Atomic orbital electron populations 1.21899 0.98353 0.99372 0.99540 1.18303 0.90852 0.91999 0.80604 0.97770 1.21537 1.36625 1.09352 0.90647 0.90351 1.25772 0.95006 0.95479 1.02310 1.70081 1.40360 1.20477 1.24805 0.85356 0.78874 0.77970 0.78276 1.19979 1.18412 1.21660 1.45413 1.68166 1.14226 1.08004 1.16240 0.78442 0.84847 0.81116 1.90899 1.57996 1.16568 1.84921 1.42300 1.69398 1.12507 1.07013 1.18446 0.94274 0.94368 0.88045 1.23065 0.93408 0.99608 0.87543 1.67190 1.27472 1.05848 1.18092 1.18073 0.93537 0.93597 0.85488 1.91627 1.93462 1.77958 1.45770 1.18230 0.92903 0.90587 0.96090 1.91540 1.72779 1.55425 1.90596 1.21768 1.01097 0.96336 0.93726 0.92433 0.96624 0.93518 0.92635 0.75591 0.72386 0.75946 0.82842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.20 9.35 71.98 0.67 -5.53 16 2 C 0.29 13.63 2.46 44.24 0.11 13.74 16 3 H 0.00 0.25 7.58 -2.39 -0.02 0.23 16 4 C -0.54 -26.63 8.67 25.60 0.22 -26.41 16 5 H 0.08 3.50 7.72 -2.91 -0.02 3.48 16 6 C 0.01 0.75 5.32 84.66 0.45 1.20 16 7 N -0.92 -51.04 11.69 21.45 0.25 -50.78 16 8 Si 0.97 39.99 29.54 68.60 2.03 42.02 16 9 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 10 H -0.26 -10.08 7.11 99.48 0.71 -9.38 16 11 H -0.29 -12.18 7.11 99.48 0.71 -11.48 16 12 N -0.71 -25.07 5.07 -461.40 -2.34 -27.41 16 13 C 0.69 23.76 8.38 179.06 1.50 25.26 16 14 O -0.62 -27.51 13.58 -4.01 -0.05 -27.57 16 15 N -0.66 -14.38 5.36 -316.85 -1.70 -16.08 16 16 C 0.15 3.34 6.29 38.19 0.24 3.58 16 17 C 0.12 2.17 11.12 84.81 0.94 3.11 16 18 N -0.47 -10.74 10.36 -196.29 -2.03 -12.77 16 19 C 0.25 6.37 8.41 84.79 0.71 7.08 16 20 F -0.11 -2.87 17.21 44.97 0.77 -2.10 16 21 C 0.05 1.24 7.35 22.49 0.17 1.40 16 22 F -0.12 -3.60 17.19 44.97 0.77 -2.82 16 23 C -0.10 -2.79 8.78 22.61 0.20 -2.59 16 24 H 0.06 3.00 6.43 -2.39 -0.02 2.99 16 25 H 0.01 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 27 H 0.26 13.99 8.31 -92.70 -0.77 13.22 16 28 H 0.41 11.22 8.54 -92.71 -0.79 10.43 16 29 H 0.44 5.28 8.84 -92.71 -0.82 4.46 16 30 H 0.22 1.75 8.06 -2.91 -0.02 1.73 16 31 H 0.15 5.01 6.43 -2.91 -0.02 4.99 16 Total: -1.00 -66.19 285.65 2.51 -63.68 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: -0.40 Total: 13.00 kcal Atomic # 6 Polarization: 15.63 SS G_CDS: 5.22 Total: 20.85 kcal Atomic # 7 Polarization: -101.22 SS G_CDS: -5.82 Total: -107.04 kcal Atomic # 8 Polarization: -27.51 SS G_CDS: -0.05 Total: -27.57 kcal Atomic # 9 Polarization: -6.47 SS G_CDS: 1.55 Total: -4.92 kcal Atomic # 14 Polarization: 39.99 SS G_CDS: 2.03 Total: 42.02 kcal Total: -66.19 2.51 -63.68 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934400120.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.695 kcal (2) G-P(sol) polarization free energy of solvation -66.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds