Wall clock time and date at job start Mon Mar 30 2020 01:21:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47078 * 2 1 4 4 C 1.50700 * 109.47332 * 240.00284 * 2 1 3 5 5 H 1.08004 * 119.99600 * 239.99612 * 4 2 1 6 6 C 1.37878 * 120.00083 * 60.27172 * 4 2 1 7 7 N 1.31505 * 119.99933 * 359.72212 * 6 4 2 8 8 Si 1.86802 * 119.99713 * 179.73047 * 6 4 2 9 9 H 1.48494 * 109.47651 * 89.99801 * 8 6 4 10 10 H 1.48506 * 109.46683 * 210.00050 * 8 6 4 11 11 H 1.48501 * 109.47086 * 329.99160 * 8 6 4 12 12 N 1.46502 * 109.47417 * 119.99780 * 2 1 3 13 13 C 1.34776 * 119.99989 * 275.00473 * 12 2 1 14 14 O 1.21590 * 119.99967 * 359.97438 * 13 12 2 15 15 N 1.34769 * 119.99945 * 180.02562 * 13 12 2 16 16 C 1.40093 * 120.00452 * 174.69781 * 15 13 12 17 17 C 1.38760 * 120.44726 * 147.44394 * 16 15 13 18 18 N 1.31890 * 120.74551 * 179.97438 * 17 16 15 19 19 C 1.31993 * 121.78205 * 0.02562 * 18 17 16 20 20 F 1.35102 * 119.58681 * 179.97438 * 19 18 17 21 21 C 1.38752 * 120.82109 * 0.02562 * 19 18 17 22 22 F 1.35104 * 120.41670 * 180.02562 * 21 19 18 23 23 C 1.38641 * 119.16802 * 359.69672 * 21 19 18 24 24 H 1.08999 * 109.47336 * 299.99413 * 1 2 3 25 25 H 1.09002 * 109.47623 * 60.00373 * 1 2 3 26 26 H 1.09006 * 109.46693 * 180.02562 * 1 2 3 27 27 H 0.97005 * 119.99885 * 180.02562 * 7 6 4 28 28 H 0.96998 * 119.99484 * 95.00002 * 12 2 1 29 29 H 0.97004 * 120.00334 * 354.69115 * 15 13 12 30 30 H 1.07994 * 119.62946 * 0.02562 * 17 16 15 31 31 H 1.07999 * 120.81554 * 180.29608 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1313 6 6 1.7039 -0.2360 -2.4827 7 7 0.9478 0.8332 -2.6034 8 14 2.3329 -1.1122 -4.0079 9 1 1.3570 -2.1532 -4.4188 10 1 2.5018 -0.1298 -5.1088 11 1 3.6403 -1.7498 -3.7087 12 7 2.0184 -0.6906 1.1962 13 6 2.1470 -0.0182 2.3571 14 8 1.8582 1.1616 2.4116 15 7 2.5968 -0.6533 3.4574 16 6 2.8363 0.0682 4.6341 17 6 2.6387 -0.5229 5.8739 18 7 2.8629 0.1508 6.9854 19 6 3.2798 1.4030 6.9673 20 9 3.4949 2.0513 8.1330 21 6 3.4989 2.0621 5.7662 22 9 3.9261 3.3437 5.7572 23 6 3.2804 1.3867 4.5752 24 1 -0.3634 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 0.7164 1.1667 -3.4844 28 1 2.2491 -1.6317 1.1526 29 1 2.7547 -1.6102 3.4347 30 1 2.2984 -1.5463 5.9293 31 1 3.4470 1.8724 3.6251 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000934400121.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:31 Heat of formation + Delta-G solvation = -75.514756 kcal Electronic energy + Delta-G solvation = -19998.419038 eV Core-core repulsion = 16337.523788 eV Total energy + Delta-G solvation = -3660.895250 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.087 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.58464 -48.68160 -40.83497 -39.19692 -35.58137 -34.57332 -32.72043 -32.00003 -30.05733 -28.43747 -25.36791 -24.52442 -23.66668 -21.57095 -20.18157 -18.89092 -18.37940 -18.17781 -17.56308 -16.73438 -16.27201 -15.91427 -15.27143 -15.16638 -14.93231 -14.74414 -14.32495 -14.14039 -13.50314 -13.36102 -13.13658 -12.85337 -12.53424 -11.92796 -11.21887 -11.17680 -10.97764 -10.76307 -10.45835 -10.34252 -10.31071 -9.82643 -9.47315 -9.17315 -8.69972 -8.46315 -8.05253 -6.22825 -4.32951 0.50532 0.77477 2.67457 3.10984 3.17934 3.18706 3.25707 3.27298 3.60125 3.88827 4.17113 4.26446 4.51232 4.61047 4.89036 5.10270 5.13913 5.47838 5.78503 6.10583 6.52945 6.60963 6.83151 6.87231 7.03285 7.23512 7.26091 7.49323 7.65174 7.81590 8.02479 8.51765 8.66824 8.95809 9.34935 10.83182 Molecular weight = 271.09amu Principal moments of inertia in cm(-1) A = 0.041345 B = 0.003693 C = 0.003583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.057855 B = 7579.875138 C = 7812.722118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.279 3.721 3 H 0.051 0.949 4 C -0.537 4.537 5 H 0.062 0.938 6 C 0.068 3.932 7 N -0.882 5.882 8 Si 0.904 3.096 9 H -0.279 1.279 10 H -0.284 1.284 11 H -0.273 1.273 12 N -0.711 5.711 13 C 0.690 3.310 14 O -0.578 6.578 15 N -0.686 5.686 16 C 0.160 3.840 17 C 0.091 3.909 18 N -0.464 5.464 19 C 0.247 3.753 20 F -0.107 7.107 21 C 0.058 3.942 22 F -0.117 7.117 23 C -0.094 4.094 24 H 0.015 0.985 25 H 0.092 0.908 26 H 0.027 0.973 27 H 0.266 0.734 28 H 0.389 0.611 29 H 0.411 0.589 30 H 0.177 0.823 31 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.274 -4.290 13.437 14.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.177 3.823 3 H 0.069 0.931 4 C -0.576 4.576 5 H 0.080 0.920 6 C -0.136 4.136 7 N -0.519 5.519 8 Si 0.731 3.269 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.198 1.198 12 N -0.362 5.362 13 C 0.391 3.609 14 O -0.456 6.456 15 N -0.335 5.335 16 C 0.060 3.940 17 C -0.071 4.071 18 N -0.177 5.177 19 C 0.091 3.909 20 F -0.086 7.086 21 C 0.034 3.966 22 F -0.095 7.095 23 C -0.123 4.123 24 H 0.035 0.965 25 H 0.110 0.890 26 H 0.046 0.954 27 H 0.076 0.924 28 H 0.222 0.778 29 H 0.248 0.752 30 H 0.194 0.806 31 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 3.784 -3.405 13.995 14.892 hybrid contribution 0.640 -0.616 -1.450 1.701 sum 4.424 -4.021 12.544 13.896 Atomic orbital electron populations 1.22116 0.98326 0.99244 1.01082 1.18772 0.91018 0.93806 0.78656 0.93091 1.21169 1.32928 1.13369 0.90120 0.91969 1.24876 0.94738 0.94896 0.99090 1.69893 1.35631 1.22226 1.24109 0.86415 0.79171 0.79249 0.82069 1.20489 1.20998 1.19831 1.45928 1.67853 1.13591 1.08802 1.16197 0.78715 0.85622 0.80405 1.90921 1.56504 1.14264 1.83864 1.42857 1.69577 1.11719 1.09338 1.18346 0.96325 0.92178 0.87189 1.22343 0.99440 1.00810 0.84459 1.67025 1.12729 1.05855 1.32082 1.17991 1.03337 0.88996 0.80609 1.91637 1.92101 1.78949 1.45885 1.18208 1.03896 0.81317 0.93136 1.91568 1.87098 1.33778 1.97083 1.21762 0.97011 0.94590 0.98894 0.96543 0.88971 0.95370 0.92409 0.77841 0.75248 0.80622 0.80862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.50 9.26 37.16 0.34 -3.15 16 2 C 0.28 6.60 2.56 -69.08 -0.18 6.42 16 3 H 0.05 1.40 7.58 -51.93 -0.39 1.01 16 4 C -0.54 -13.36 8.73 -34.44 -0.30 -13.67 16 5 H 0.06 1.46 7.74 -52.48 -0.41 1.06 16 6 C 0.07 1.74 5.31 -17.82 -0.09 1.64 16 7 N -0.88 -23.82 11.33 55.43 0.63 -23.20 16 8 Si 0.90 19.73 29.54 -169.99 -5.02 14.71 16 9 H -0.28 -6.03 7.11 56.52 0.40 -5.62 16 10 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 11 H -0.27 -5.87 7.11 56.52 0.40 -5.46 16 12 N -0.71 -13.08 5.07 -59.81 -0.30 -13.39 16 13 C 0.69 12.16 8.29 -86.93 -0.72 11.44 16 14 O -0.58 -12.54 13.70 5.29 0.07 -12.47 16 15 N -0.69 -8.37 5.37 -14.12 -0.08 -8.45 16 16 C 0.16 1.99 6.31 -83.51 -0.53 1.46 16 17 C 0.09 0.95 11.11 -17.33 -0.19 0.76 16 18 N -0.46 -5.88 10.36 -13.40 -0.14 -6.02 16 19 C 0.25 3.33 8.41 -17.29 -0.15 3.18 16 20 F -0.11 -1.45 17.21 2.25 0.04 -1.41 16 21 C 0.06 0.80 7.35 -39.24 -0.29 0.51 16 22 F -0.12 -1.66 17.19 2.25 0.04 -1.62 16 23 C -0.09 -1.33 8.75 -39.06 -0.34 -1.67 16 24 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.09 2.38 6.08 -51.93 -0.32 2.06 16 26 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 28 H 0.39 5.89 8.56 -40.82 -0.35 5.54 16 29 H 0.41 3.34 8.84 -40.82 -0.36 2.98 16 30 H 0.18 1.18 8.06 -52.49 -0.42 0.76 16 31 H 0.17 2.77 6.48 -52.49 -0.34 2.43 16 LS Contribution 285.09 15.07 4.30 4.30 Total: -1.00 -29.64 285.09 -5.48 -35.11 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -2.57 Total: 5.51 kcal Atomic # 6 Polarization: 9.37 SS G_CDS: -2.44 Total: 6.93 kcal Atomic # 7 Polarization: -51.16 SS G_CDS: 0.11 Total: -51.05 kcal Atomic # 8 Polarization: -12.54 SS G_CDS: 0.07 Total: -12.47 kcal Atomic # 9 Polarization: -3.11 SS G_CDS: 0.08 Total: -3.04 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -5.02 Total: 14.71 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -29.64 -5.48 -35.11 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934400121.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.400 kcal (2) G-P(sol) polarization free energy of solvation -29.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds