Wall clock time and date at job start Mon Mar 30 2020 01:30:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46502 * 120.00196 * 2 1 4 4 C 1.50695 * 109.47375 * 270.00252 * 3 2 1 5 5 H 1.08002 * 119.99705 * 359.97438 * 4 3 2 6 6 C 1.37872 * 120.00294 * 180.02562 * 4 3 2 7 7 N 1.31519 * 119.99715 * 359.97438 * 6 4 3 8 8 Si 1.86802 * 120.00133 * 179.97438 * 6 4 3 9 9 H 1.48493 * 109.47057 * 59.99870 * 8 6 4 10 10 H 1.48506 * 109.46920 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.46997 * 299.99593 * 8 6 4 12 12 C 1.34773 * 119.99906 * 180.02562 * 2 1 3 13 13 O 1.21599 * 120.00196 * 180.02562 * 12 2 1 14 14 N 1.34783 * 120.00219 * 0.02562 * 12 2 1 15 15 C 1.40088 * 120.00163 * 184.64549 * 14 12 2 16 16 C 1.38761 * 120.44844 * 145.03273 * 15 14 12 17 17 N 1.31879 * 120.74867 * 180.02562 * 16 15 14 18 18 C 1.31997 * 121.78414 * 0.02562 * 17 16 15 19 19 F 1.35098 * 119.59185 * 179.97438 * 18 17 16 20 20 C 1.38763 * 120.82006 * 359.97438 * 18 17 16 21 21 F 1.35096 * 120.41702 * 180.02562 * 20 18 17 22 22 C 1.38643 * 119.16539 * 0.02562 * 20 18 17 23 23 H 1.09001 * 109.47396 * 270.00049 * 1 2 3 24 24 H 1.09002 * 109.46952 * 29.99809 * 1 2 3 25 25 H 1.09003 * 109.47163 * 149.99693 * 1 2 3 26 26 H 1.09002 * 109.46594 * 30.00160 * 3 2 1 27 27 H 1.08996 * 109.46956 * 149.99777 * 3 2 1 28 28 H 0.97010 * 119.99438 * 180.02562 * 7 6 4 29 29 H 0.96995 * 119.99450 * 4.63600 * 14 12 2 30 30 H 1.08000 * 119.62374 * 359.73890 * 16 15 14 31 31 H 1.07997 * 120.81321 * 180.02562 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7038 -1.4207 5 1 2.0981 1.0958 -2.2416 6 6 3.1269 2.8774 -1.6727 7 7 3.5543 3.6175 -0.6730 8 14 3.4388 3.4164 -3.4339 9 1 2.1416 3.5943 -4.1342 10 1 4.1813 4.7025 -3.4338 11 1 4.2412 2.3811 -4.1335 12 6 2.1388 -1.1672 -0.0005 13 8 3.3548 -1.1672 -0.0001 14 7 1.4649 -2.3344 -0.0016 15 6 2.1619 -3.5457 0.0961 16 6 1.6158 -4.6173 0.7882 17 7 2.2669 -5.7601 0.8843 18 6 3.4538 -5.9326 0.3329 19 9 4.0817 -7.1221 0.4595 20 6 4.0646 -4.9073 -0.3751 21 9 5.2792 -5.0929 -0.9365 22 6 3.4125 -3.6901 -0.4991 23 1 -0.3634 0.0000 1.0277 24 1 -0.3633 0.8900 -0.5138 25 1 -0.3634 -0.8900 -0.5139 26 1 1.6084 2.0283 0.5139 27 1 3.1499 1.1383 0.5139 28 1 4.0312 4.4435 -0.8503 29 1 0.4974 -2.3357 -0.0698 30 1 0.6486 -4.5128 1.2572 31 1 3.8632 -2.8742 -1.0446 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000934400489.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:25 Heat of formation + Delta-G solvation = -83.964306 kcal Electronic energy + Delta-G solvation = -20199.347117 eV Core-core repulsion = 16538.085467 eV Total energy + Delta-G solvation = -3661.261650 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.087 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -50.67427 -49.77324 -42.05178 -40.52568 -36.92289 -36.20144 -34.69405 -33.15118 -31.02087 -29.47711 -27.39369 -25.70739 -25.22795 -23.97306 -21.38006 -19.87711 -19.34350 -19.14169 -18.69004 -18.26959 -17.77891 -17.38546 -16.68093 -16.55238 -16.26668 -16.08958 -15.68057 -15.22564 -14.94345 -14.65543 -14.26384 -14.15340 -13.94195 -13.81597 -13.47007 -13.14990 -12.80141 -12.53614 -12.19369 -12.07253 -11.72407 -11.51814 -11.04753 -10.64430 -10.61752 -9.68921 -9.27404 -8.21068 -6.35377 -0.52833 -0.28440 1.38459 1.41810 1.44886 1.50624 1.94443 2.12539 2.32989 2.41372 2.83368 2.90131 3.09613 3.31663 3.53938 3.66980 4.19880 4.33054 4.49181 4.69240 4.77304 4.86189 4.99005 5.03480 5.23213 5.45802 5.52629 5.73603 5.96740 6.05935 6.25222 6.73341 6.94712 7.30863 7.51259 8.85266 Molecular weight = 271.09amu Principal moments of inertia in cm(-1) A = 0.026637 B = 0.004512 C = 0.004049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.914742 B = 6203.939270 C = 6913.663786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.613 5.613 3 C 0.274 3.726 4 C -0.543 4.543 5 H 0.055 0.945 6 C 0.011 3.989 7 N -0.927 5.927 8 Si 0.963 3.037 9 H -0.260 1.260 10 H -0.281 1.281 11 H -0.280 1.280 12 C 0.693 3.307 13 O -0.618 6.618 14 N -0.660 5.660 15 C 0.148 3.852 16 C 0.127 3.873 17 N -0.470 5.470 18 C 0.249 3.751 19 F -0.108 7.108 20 C 0.046 3.954 21 F -0.126 7.126 22 C -0.105 4.105 23 H 0.078 0.922 24 H 0.073 0.927 25 H 0.093 0.907 26 H 0.032 0.968 27 H 0.001 0.999 28 H 0.267 0.733 29 H 0.432 0.568 30 H 0.228 0.772 31 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.944 -14.983 1.757 18.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.347 5.347 3 C 0.152 3.848 4 C -0.582 4.582 5 H 0.073 0.927 6 C -0.189 4.189 7 N -0.567 5.567 8 Si 0.788 3.212 9 H -0.184 1.184 10 H -0.206 1.206 11 H -0.206 1.206 12 C 0.394 3.606 13 O -0.498 6.498 14 N -0.313 5.313 15 C 0.048 3.952 16 C -0.034 4.034 17 N -0.183 5.183 18 C 0.094 3.906 19 F -0.087 7.087 20 C 0.022 3.978 21 F -0.104 7.104 22 C -0.134 4.134 23 H 0.096 0.904 24 H 0.091 0.909 25 H 0.111 0.889 26 H 0.050 0.950 27 H 0.020 0.980 28 H 0.076 0.924 29 H 0.275 0.725 30 H 0.244 0.756 31 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -9.352 -15.419 2.249 18.173 hybrid contribution 1.089 1.128 -1.414 2.111 sum -8.262 -14.290 0.835 16.528 Atomic orbital electron populations 1.21999 0.77370 1.04314 1.03157 1.47359 1.08282 1.04579 1.74443 1.18747 0.91111 0.78934 0.95977 1.21690 1.36815 1.06463 0.93188 0.92688 1.25780 0.94991 0.96531 1.01554 1.70035 1.38878 1.14827 1.32943 0.85536 0.78806 0.77260 0.79609 1.18427 1.20633 1.20593 1.16097 0.85043 0.81170 0.78258 1.90894 1.13889 1.86284 1.58706 1.42450 1.11182 1.01200 1.76485 1.18500 0.92679 0.87599 0.96402 1.23054 1.01552 0.84494 0.94341 1.67198 1.05843 1.25866 1.19395 1.18034 0.90796 0.81994 0.99785 1.91627 1.79989 1.42971 1.94155 1.18242 0.83952 0.94632 1.00979 1.91536 1.40482 1.95447 1.82980 1.21805 0.96418 0.95745 0.99431 0.90388 0.90859 0.88874 0.94961 0.98039 0.92437 0.72456 0.75614 0.83274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.71 10.24 127.77 1.31 3.02 16 2 N -0.61 -22.90 2.86 -869.31 -2.48 -25.39 16 3 C 0.27 13.72 5.16 85.63 0.44 14.17 16 4 C -0.54 -29.57 9.38 25.60 0.24 -29.33 16 5 H 0.05 2.95 7.81 -2.91 -0.02 2.92 16 6 C 0.01 0.60 5.46 84.65 0.46 1.06 16 7 N -0.93 -54.27 13.29 21.45 0.28 -53.98 16 8 Si 0.96 43.44 29.54 68.60 2.03 45.47 16 9 H -0.26 -10.93 7.11 99.48 0.71 -10.23 16 10 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 11 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 12 C 0.69 25.70 8.14 179.05 1.46 27.15 16 13 O -0.62 -29.55 13.40 -4.03 -0.05 -29.60 16 14 N -0.66 -15.70 5.23 -316.83 -1.66 -17.36 16 15 C 0.15 3.55 6.32 38.19 0.24 3.79 16 16 C 0.13 2.24 11.12 84.81 0.94 3.18 16 17 N -0.47 -10.78 10.36 -196.30 -2.03 -12.81 16 18 C 0.25 6.58 8.41 84.79 0.71 7.29 16 19 F -0.11 -2.91 17.21 44.97 0.77 -2.14 16 20 C 0.05 1.31 7.35 22.49 0.17 1.48 16 21 F -0.13 -3.87 17.19 44.97 0.77 -3.10 16 22 C -0.11 -3.17 8.79 22.61 0.20 -2.97 16 23 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 24 H 0.07 1.88 8.07 -2.39 -0.02 1.86 16 25 H 0.09 1.37 6.30 -2.39 -0.02 1.35 16 26 H 0.03 1.63 8.07 -2.39 -0.02 1.61 16 27 H 0.00 0.09 7.42 -2.39 -0.02 0.07 16 28 H 0.27 14.76 8.31 -92.70 -0.77 13.99 16 29 H 0.43 6.07 6.52 -92.71 -0.60 5.46 16 30 H 0.23 1.66 8.06 -2.91 -0.02 1.63 16 31 H 0.15 5.48 6.31 -2.91 -0.02 5.47 16 Total: -1.00 -72.65 285.79 4.39 -68.26 By element: Atomic # 1 Polarization: 1.22 SS G_CDS: 0.59 Total: 1.81 kcal Atomic # 6 Polarization: 22.66 SS G_CDS: 6.17 Total: 28.83 kcal Atomic # 7 Polarization: -103.64 SS G_CDS: -5.89 Total: -109.53 kcal Atomic # 8 Polarization: -29.55 SS G_CDS: -0.05 Total: -29.60 kcal Atomic # 9 Polarization: -6.78 SS G_CDS: 1.55 Total: -5.24 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Total: -72.65 4.39 -68.26 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934400489.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.706 kcal (2) G-P(sol) polarization free energy of solvation -72.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds