Wall clock time and date at job start Mon Mar 30 2020 00:59:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86809 * 119.99835 * 2 1 4 4 H 1.48493 * 109.47037 * 239.99493 * 3 2 1 5 5 H 1.48501 * 109.46667 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47133 * 119.99441 * 3 2 1 7 7 C 1.37876 * 120.00513 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00510 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99720 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47208 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.47198 * 180.02562 * 10 9 7 12 12 C 1.34777 * 119.99665 * 180.27868 * 11 10 9 13 13 O 1.21473 * 120.00341 * 359.72050 * 12 11 10 14 14 C 1.48460 * 119.99746 * 179.72338 * 12 11 10 15 15 C 1.39534 * 120.54763 * 179.97438 * 14 12 11 16 16 C 1.38764 * 118.26008 * 180.02562 * 15 14 12 17 17 C 1.50696 * 120.42486 * 180.02562 * 16 15 14 18 18 F 1.39895 * 109.47243 * 300.00598 * 17 16 15 19 19 F 1.39905 * 109.46792 * 60.00418 * 17 16 15 20 20 N 1.32201 * 119.14831 * 0.02562 * 16 15 14 21 21 C 1.31884 * 121.03867 * 359.97438 * 20 16 15 22 22 N 1.31584 * 121.91592 * 359.71965 * 21 20 16 23 23 H 0.96999 * 120.00239 * 0.02562 * 1 2 3 24 24 H 1.08995 * 109.47322 * 60.00361 * 9 7 2 25 25 H 1.09006 * 109.46960 * 299.99918 * 9 7 2 26 26 H 1.09009 * 109.46730 * 59.99906 * 10 9 7 27 27 H 1.08998 * 109.46846 * 300.00451 * 10 9 7 28 28 H 0.97001 * 119.99790 * 359.97438 * 11 10 9 29 29 H 1.07991 * 120.87208 * 359.97438 * 15 14 12 30 30 H 1.08995 * 109.47189 * 180.02562 * 17 16 15 31 31 H 1.08002 * 119.04280 * 180.02562 * 21 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6966 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2455 -3.6620 0.0005 11 7 1.5130 -4.9308 -0.0001 12 6 2.1870 -6.0979 0.0055 13 8 3.4018 -6.0979 0.0059 14 6 1.4448 -7.3836 0.0111 15 6 2.1309 -8.5986 0.0163 16 6 1.3897 -9.7717 0.0209 17 6 2.0807 -11.1109 0.0272 18 9 2.8815 -11.2279 -1.1139 19 9 2.8796 -11.2180 1.1707 20 7 0.0697 -9.6994 0.0196 21 6 -0.5475 -8.5339 0.0145 22 7 0.1141 -7.3964 0.0161 23 1 -0.4850 0.8400 -0.0004 24 1 0.6249 -2.5571 -0.8897 25 1 0.6242 -2.5567 0.8904 26 1 2.8722 -3.6042 0.8906 27 1 2.8722 -3.6042 -0.8894 28 1 0.5430 -4.9308 0.0000 29 1 3.2105 -8.6253 0.0160 30 1 1.3340 -11.9050 0.0296 31 1 -1.6273 -8.5124 0.0140 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000935338025.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:22 Heat of formation + Delta-G solvation = -94.912367 kcal Electronic energy + Delta-G solvation = -19421.410691 eV Core-core repulsion = 15759.674297 eV Total energy + Delta-G solvation = -3661.736394 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.087 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.51938 -47.50615 -41.61306 -39.20642 -35.15529 -34.67538 -32.90003 -32.79272 -29.79924 -28.09161 -25.98822 -24.43624 -23.78914 -21.26024 -20.71765 -18.78810 -18.57818 -17.77023 -17.36970 -16.47884 -16.12389 -15.92712 -15.67363 -15.52021 -14.96153 -14.71528 -14.50669 -14.33473 -13.85593 -13.47674 -13.34354 -13.18989 -12.33468 -11.98844 -11.49587 -11.31556 -11.28247 -11.05768 -10.71380 -10.47619 -10.41520 -10.22200 -9.88828 -9.57095 -9.31649 -8.70003 -8.43251 -6.12281 -4.15910 0.05289 0.27521 2.60547 2.63661 3.01749 3.29411 3.33538 3.36742 3.44634 3.56123 3.61194 3.95072 4.13738 4.38796 4.45648 4.49581 4.58649 5.02388 5.11444 5.24696 5.69751 6.16878 6.22414 6.26681 6.59833 6.68911 7.36267 7.46461 7.55354 7.77667 7.85118 8.18322 8.32884 8.89495 9.49138 10.99176 Molecular weight = 271.09amu Principal moments of inertia in cm(-1) A = 0.043904 B = 0.003142 C = 0.002990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.607691 B = 8908.435358 C = 9360.928115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.060 3.940 3 Si 0.898 3.102 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.525 4.525 8 H 0.060 0.940 9 C 0.012 3.988 10 C 0.117 3.883 11 N -0.690 5.690 12 C 0.556 3.444 13 O -0.530 6.530 14 C 0.149 3.851 15 C -0.135 4.135 16 C 0.096 3.904 17 C 0.329 3.671 18 F -0.187 7.187 19 F -0.187 7.187 20 N -0.486 5.486 21 C 0.301 3.699 22 N -0.477 5.477 23 H 0.263 0.737 24 H 0.024 0.976 25 H 0.025 0.975 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.410 0.590 29 H 0.167 0.833 30 H 0.140 0.860 31 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.116 -21.884 0.036 21.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.142 4.142 3 Si 0.725 3.275 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.563 4.563 8 H 0.078 0.922 9 C -0.025 4.025 10 C -0.004 4.004 11 N -0.339 5.339 12 C 0.338 3.662 13 O -0.406 6.406 14 C 0.000 4.000 15 C -0.158 4.158 16 C -0.054 4.054 17 C 0.274 3.726 18 F -0.168 7.168 19 F -0.168 7.168 20 N -0.200 5.200 21 C 0.013 3.987 22 N -0.193 5.193 23 H 0.073 0.927 24 H 0.043 0.957 25 H 0.043 0.957 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.246 0.754 29 H 0.185 0.815 30 H 0.157 0.843 31 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -1.333 -21.650 0.040 21.691 hybrid contribution 0.808 0.926 0.002 1.229 sum -0.525 -20.724 0.042 20.731 Atomic orbital electron populations 1.69943 1.06098 1.27079 1.50029 1.24993 0.94898 0.99428 0.94886 0.86557 0.79511 0.82584 0.78799 1.20085 1.21219 1.20079 1.20987 0.93220 0.90285 1.51829 0.92211 1.19337 0.94149 0.90861 0.98149 1.21931 0.96292 0.80864 1.01328 1.46269 1.11629 1.05838 1.70173 1.17722 0.86737 0.82862 0.78928 1.90800 1.12480 1.86734 1.50575 1.22026 0.89842 0.95144 0.93022 1.22770 1.04311 0.92029 0.96702 1.22033 0.91128 0.95448 0.96747 1.20082 0.85704 0.94931 0.71868 1.93068 1.76149 1.96765 1.50809 1.93071 1.76250 1.96858 1.50616 1.67953 1.09174 1.31380 1.11521 1.25105 1.01494 0.81286 0.90852 1.68443 1.08179 1.32241 1.10444 0.92713 0.95720 0.95716 0.91903 0.91898 0.75401 0.81511 0.84294 0.77022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.83 13.29 55.43 0.74 -25.09 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.90 21.12 29.54 -169.99 -5.02 16.10 16 4 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.52 -14.31 9.11 -34.44 -0.31 -14.62 16 8 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 9 C 0.01 0.30 5.09 -27.88 -0.14 0.16 16 10 C 0.12 2.43 5.61 -4.04 -0.02 2.40 16 11 N -0.69 -12.15 5.55 -61.05 -0.34 -12.49 16 12 C 0.56 9.47 7.83 -12.05 -0.09 9.37 16 13 O -0.53 -10.38 16.43 5.39 0.09 -10.29 16 14 C 0.15 2.07 6.79 -82.63 -0.56 1.51 16 15 C -0.14 -1.65 9.32 -38.90 -0.36 -2.01 16 16 C 0.10 0.98 6.31 -82.24 -0.52 0.46 16 17 C 0.33 2.64 5.58 36.00 0.20 2.85 16 18 F -0.19 -1.76 17.27 2.25 0.04 -1.72 16 19 F -0.19 -1.76 17.27 2.25 0.04 -1.72 16 20 N -0.49 -4.79 10.35 -10.81 -0.11 -4.90 16 21 C 0.30 2.89 12.28 -92.26 -1.13 1.76 16 22 N -0.48 -5.91 9.70 -11.13 -0.11 -6.02 16 23 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 24 H 0.02 0.63 8.14 -51.93 -0.42 0.20 16 25 H 0.02 0.63 8.14 -51.93 -0.42 0.20 16 26 H 0.06 1.33 8.14 -51.92 -0.42 0.90 16 27 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 28 H 0.41 6.65 7.86 -40.82 -0.32 6.33 16 29 H 0.17 1.98 7.74 -52.49 -0.41 1.57 16 30 H 0.14 0.67 8.12 -51.93 -0.42 0.25 16 31 H 0.21 1.19 8.06 -52.49 -0.42 0.77 16 LS Contribution 294.47 15.07 4.44 4.44 Total: -1.00 -31.19 294.47 -6.09 -37.28 By element: Atomic # 1 Polarization: 3.76 SS G_CDS: -2.80 Total: 0.96 kcal Atomic # 6 Polarization: 6.50 SS G_CDS: -3.04 Total: 3.45 kcal Atomic # 7 Polarization: -48.68 SS G_CDS: 0.18 Total: -48.50 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: 0.09 Total: -10.29 kcal Atomic # 9 Polarization: -3.52 SS G_CDS: 0.08 Total: -3.45 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -31.19 -6.09 -37.28 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935338025.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.630 kcal (2) G-P(sol) polarization free energy of solvation -31.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds