Wall clock time and date at job start Mon Mar 30 2020 00:59:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86809 * 119.99835 * 2 1 4 4 H 1.48493 * 109.47037 * 239.99493 * 3 2 1 5 5 H 1.48501 * 109.46667 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47133 * 119.99441 * 3 2 1 7 7 C 1.37876 * 120.00513 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00510 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99720 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47208 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.47198 * 180.02562 * 10 9 7 12 12 C 1.34777 * 119.99665 * 180.27868 * 11 10 9 13 13 O 1.21473 * 120.00341 * 359.72050 * 12 11 10 14 14 C 1.48460 * 119.99746 * 179.72338 * 12 11 10 15 15 C 1.39534 * 120.54763 * 179.97438 * 14 12 11 16 16 C 1.38764 * 118.26008 * 180.02562 * 15 14 12 17 17 C 1.50696 * 120.42486 * 180.02562 * 16 15 14 18 18 F 1.39895 * 109.47243 * 300.00598 * 17 16 15 19 19 F 1.39905 * 109.46792 * 60.00418 * 17 16 15 20 20 N 1.32201 * 119.14831 * 0.02562 * 16 15 14 21 21 C 1.31884 * 121.03867 * 359.97438 * 20 16 15 22 22 N 1.31584 * 121.91592 * 359.71965 * 21 20 16 23 23 H 0.96999 * 120.00239 * 0.02562 * 1 2 3 24 24 H 1.08995 * 109.47322 * 60.00361 * 9 7 2 25 25 H 1.09006 * 109.46960 * 299.99918 * 9 7 2 26 26 H 1.09009 * 109.46730 * 59.99906 * 10 9 7 27 27 H 1.08998 * 109.46846 * 300.00451 * 10 9 7 28 28 H 0.97001 * 119.99790 * 359.97438 * 11 10 9 29 29 H 1.07991 * 120.87208 * 359.97438 * 15 14 12 30 30 H 1.08995 * 109.47189 * 180.02562 * 17 16 15 31 31 H 1.08002 * 119.04280 * 180.02562 * 21 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6966 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2455 -3.6620 0.0005 11 7 1.5130 -4.9308 -0.0001 12 6 2.1870 -6.0979 0.0055 13 8 3.4018 -6.0979 0.0059 14 6 1.4448 -7.3836 0.0111 15 6 2.1309 -8.5986 0.0163 16 6 1.3897 -9.7717 0.0209 17 6 2.0807 -11.1109 0.0272 18 9 2.8815 -11.2279 -1.1139 19 9 2.8796 -11.2180 1.1707 20 7 0.0697 -9.6994 0.0196 21 6 -0.5475 -8.5339 0.0145 22 7 0.1141 -7.3964 0.0161 23 1 -0.4850 0.8400 -0.0004 24 1 0.6249 -2.5571 -0.8897 25 1 0.6242 -2.5567 0.8904 26 1 2.8722 -3.6042 0.8906 27 1 2.8722 -3.6042 -0.8894 28 1 0.5430 -4.9308 0.0000 29 1 3.2105 -8.6253 0.0160 30 1 1.3340 -11.9050 0.0296 31 1 -1.6273 -8.5124 0.0140 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000935338025.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:21 Heat of formation + Delta-G solvation = -115.753637 kcal Electronic energy + Delta-G solvation = -19422.314436 eV Core-core repulsion = 15759.674297 eV Total energy + Delta-G solvation = -3662.640139 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.087 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -50.20279 -48.19916 -42.54893 -40.57754 -36.79305 -35.66847 -34.80107 -33.73161 -31.63198 -28.90108 -27.46527 -25.82897 -24.76713 -22.99379 -22.03765 -19.80644 -19.51721 -18.52778 -18.45896 -18.11858 -17.16985 -16.91263 -16.88740 -16.75148 -16.45202 -15.99209 -15.91825 -15.08193 -14.94931 -14.82004 -14.55370 -14.30205 -14.05826 -13.26818 -12.95075 -12.64986 -12.56545 -12.37514 -12.31422 -12.19478 -11.89433 -11.61487 -11.37793 -11.14928 -10.71586 -10.61188 -10.19140 -8.24127 -6.35135 -0.94043 -0.57991 1.42563 1.43061 1.44922 1.52629 1.74233 1.93771 2.40884 2.42728 2.67431 2.94828 3.05657 3.10803 3.31383 3.55622 3.79461 3.81560 4.01855 4.27734 4.42287 4.43666 4.79969 4.88981 5.09130 5.35042 5.44204 5.54720 5.76142 6.13007 6.29201 6.57969 6.77312 6.90939 7.34344 8.87598 Molecular weight = 271.09amu Principal moments of inertia in cm(-1) A = 0.043904 B = 0.003142 C = 0.002990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.607691 B = 8908.435358 C = 9360.928115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.007 3.993 3 Si 0.966 3.034 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.268 1.268 7 C -0.548 4.548 8 H 0.062 0.938 9 C 0.022 3.978 10 C 0.136 3.864 11 N -0.690 5.690 12 C 0.558 3.442 13 O -0.559 6.559 14 C 0.134 3.866 15 C -0.144 4.144 16 C 0.102 3.898 17 C 0.332 3.668 18 F -0.195 7.195 19 F -0.195 7.195 20 N -0.474 5.474 21 C 0.305 3.695 22 N -0.491 5.491 23 H 0.266 0.734 24 H 0.009 0.991 25 H 0.009 0.991 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.417 0.583 29 H 0.164 0.836 30 H 0.181 0.819 31 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.545 -23.101 0.040 23.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.192 4.192 3 Si 0.790 3.210 4 H -0.193 1.193 5 H -0.207 1.207 6 H -0.193 1.193 7 C -0.587 4.587 8 H 0.080 0.920 9 C -0.015 4.015 10 C 0.013 3.987 11 N -0.339 5.339 12 C 0.342 3.658 13 O -0.438 6.438 14 C -0.014 4.014 15 C -0.167 4.167 16 C -0.048 4.048 17 C 0.278 3.722 18 F -0.176 7.176 19 F -0.176 7.176 20 N -0.189 5.189 21 C 0.018 3.982 22 N -0.207 5.207 23 H 0.075 0.925 24 H 0.027 0.973 25 H 0.027 0.973 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.254 0.746 29 H 0.182 0.818 30 H 0.198 0.802 31 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges -1.774 -22.884 0.045 22.953 hybrid contribution 0.877 1.206 0.000 1.491 sum -0.897 -21.679 0.045 21.697 Atomic orbital electron populations 1.70054 1.07591 1.28115 1.50824 1.25878 0.95779 1.03134 0.94358 0.85489 0.78279 0.78063 0.79167 1.19287 1.20701 1.19281 1.21433 0.93713 0.91730 1.51793 0.91950 1.19142 0.94222 0.91663 0.96519 1.21453 0.95200 0.81197 1.00813 1.46058 1.11834 1.05243 1.70784 1.18100 0.86535 0.83613 0.77528 1.90772 1.13900 1.87407 1.51686 1.21467 0.90645 0.93808 0.95529 1.22805 1.04395 0.92219 0.97275 1.22430 0.91320 0.95845 0.95213 1.20462 0.85956 0.94672 0.71147 1.93055 1.76526 1.96706 1.51324 1.93058 1.76627 1.96802 1.51134 1.68092 1.08722 1.31282 1.10771 1.25961 1.02959 0.80295 0.88944 1.68422 1.07388 1.33811 1.11106 0.92510 0.97257 0.97258 0.92434 0.92423 0.74583 0.81839 0.80189 0.73042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.09 13.29 21.45 0.28 -53.80 16 2 C 0.01 0.41 5.46 84.65 0.46 0.88 16 3 Si 0.97 43.17 29.54 68.60 2.03 45.20 16 4 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 5 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 6 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 7 C -0.55 -30.25 9.11 25.60 0.23 -30.02 16 8 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 9 C 0.02 1.10 5.09 29.85 0.15 1.25 16 10 C 0.14 5.76 5.61 86.38 0.48 6.24 16 11 N -0.69 -24.70 5.55 -465.37 -2.58 -27.28 16 12 C 0.56 19.28 7.83 86.97 0.68 19.96 16 13 O -0.56 -22.37 16.43 -3.63 -0.06 -22.43 16 14 C 0.13 3.66 6.79 42.00 0.29 3.95 16 15 C -0.14 -3.40 9.32 22.71 0.21 -3.19 16 16 C 0.10 1.89 6.31 42.63 0.27 2.16 16 17 C 0.33 4.50 5.58 71.23 0.40 4.90 16 18 F -0.19 -3.31 17.27 44.97 0.78 -2.54 16 19 F -0.19 -3.32 17.27 44.97 0.78 -2.54 16 20 N -0.47 -7.96 10.35 -188.12 -1.95 -9.90 16 21 C 0.31 5.05 12.28 180.92 2.22 7.27 16 22 N -0.49 -11.50 9.70 -189.14 -1.84 -13.34 16 23 H 0.27 14.63 8.31 -92.71 -0.77 13.86 16 24 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 25 H 0.01 0.48 8.14 -2.38 -0.02 0.46 16 26 H 0.06 2.48 8.14 -2.38 -0.02 2.46 16 27 H 0.06 2.48 8.14 -2.39 -0.02 2.47 16 28 H 0.42 13.72 7.86 -92.71 -0.73 13.00 16 29 H 0.16 3.90 7.74 -2.92 -0.02 3.87 16 30 H 0.18 1.02 8.12 -2.39 -0.02 1.00 16 31 H 0.25 1.86 8.06 -2.91 -0.02 1.84 16 Total: -1.00 -67.14 294.47 3.29 -63.85 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: 0.46 Total: 9.39 kcal Atomic # 6 Polarization: 8.01 SS G_CDS: 5.40 Total: 13.40 kcal Atomic # 7 Polarization: -98.25 SS G_CDS: -6.08 Total: -104.32 kcal Atomic # 8 Polarization: -22.37 SS G_CDS: -0.06 Total: -22.43 kcal Atomic # 9 Polarization: -6.63 SS G_CDS: 1.55 Total: -5.08 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.20 kcal Total: -67.14 3.29 -63.85 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935338025.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.905 kcal (2) G-P(sol) polarization free energy of solvation -67.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds