Wall clock time and date at job start Mon Mar 30 2020 00:58:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46503 * 109.47442 * 1.67506 * 3 2 1 5 5 C 1.36909 * 119.99947 * 263.13990 * 4 3 2 6 6 H 1.08000 * 119.99639 * 203.11935 * 5 4 3 7 7 C 1.39002 * 120.00253 * 23.11524 * 5 4 3 8 8 N 1.31391 * 120.00211 * 16.66563 * 7 5 4 9 9 Si 1.86804 * 120.00123 * 196.65946 * 7 5 4 10 10 H 1.48503 * 109.46970 * 60.00254 * 9 7 5 11 11 H 1.48501 * 109.47206 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47286 * 300.00414 * 9 7 5 13 13 C 1.34784 * 120.00011 * 83.13232 * 4 3 2 14 14 O 1.21628 * 120.00049 * 184.16663 * 13 4 3 15 15 C 1.47468 * 119.99618 * 4.16707 * 13 4 3 16 16 C 1.36588 * 125.92433 * 173.91146 * 15 13 4 17 17 N 1.36194 * 106.99985 * 180.02562 * 16 15 13 18 18 C 1.36667 * 132.43852 * 180.02562 * 17 16 15 19 19 C 1.35487 * 119.10256 * 179.97438 * 18 17 16 20 20 C 1.40292 * 119.35664 * 0.03197 * 19 18 17 21 21 N 1.31150 * 120.41693 * 359.97438 * 20 19 18 22 22 C 1.34278 * 120.94475 * 359.97438 * 21 20 19 23 23 N 1.32225 * 131.64274 * 180.02562 * 22 21 20 24 24 H 1.09003 * 109.47250 * 241.67851 * 3 2 1 25 25 H 1.09000 * 109.47410 * 121.67468 * 3 2 1 26 26 H 0.96998 * 120.00376 * 179.97438 * 8 7 5 27 27 H 1.07995 * 126.49944 * 359.97438 * 16 15 13 28 28 H 1.07993 * 120.44830 * 359.96656 * 18 17 16 29 29 H 1.08000 * 120.32596 * 180.02562 * 19 18 17 30 30 H 1.08000 * 119.79454 * 180.25805 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0970 -1.3797 -0.0404 5 6 3.4591 -2.0119 1.1188 6 1 4.1458 -2.8449 1.0878 7 6 2.9428 -1.5816 2.3356 8 7 1.8812 -0.8079 2.3621 9 14 3.7583 -2.1035 3.9332 10 1 5.1641 -1.6251 3.9506 11 1 3.0208 -1.5160 5.0804 12 1 3.7382 -3.5846 4.0385 13 6 3.1904 -2.0274 -1.2187 14 8 3.5238 -3.1968 -1.2451 15 6 2.8883 -1.3182 -2.4758 16 6 3.0546 -1.8161 -3.7368 17 7 2.6593 -0.8435 -4.6043 18 6 2.6091 -0.7897 -5.9690 19 6 2.1585 0.3390 -6.5679 20 6 1.7554 1.4242 -5.7754 21 7 1.8130 1.3487 -4.4673 22 6 2.2561 0.2368 -3.8587 23 7 2.4007 -0.0666 -2.5799 24 1 2.9711 0.4884 0.9047 25 1 2.9711 0.5404 -0.8746 26 1 1.5208 -0.5080 3.2112 27 1 3.4294 -2.7950 -3.9966 28 1 2.9244 -1.6354 -6.5620 29 1 2.1101 0.4027 -7.6449 30 1 1.3911 2.3258 -6.2453 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001115932033.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:32 Heat of formation + Delta-G solvation = 131.073137 kcal Electronic energy + Delta-G solvation = -19941.908017 eV Core-core repulsion = 16740.660277 eV Total energy + Delta-G solvation = -3201.247741 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.081 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.85928 -38.96113 -37.61889 -35.56630 -34.53470 -34.09708 -31.93162 -30.88067 -29.13284 -27.28695 -25.82065 -24.37586 -23.19677 -22.34067 -19.51187 -18.20023 -17.82553 -17.48494 -16.51114 -16.36181 -15.94093 -15.54263 -14.70423 -14.36108 -14.29817 -13.79881 -13.48861 -13.10628 -12.83870 -12.71998 -12.32328 -11.93399 -11.68041 -11.38390 -11.12093 -11.08407 -10.60459 -10.44996 -10.39936 -10.11137 -9.51503 -9.21317 -9.01430 -8.79286 -8.12005 -7.94211 -6.50391 -4.02421 0.45110 1.05965 2.39065 2.40976 3.18140 3.21871 3.24816 3.54619 3.58868 3.86399 4.12354 4.21262 4.27178 4.36989 4.47875 4.67727 4.91480 4.99049 5.02042 5.33374 5.51985 5.59313 5.69313 5.71665 6.11915 6.35749 6.58077 6.67639 6.83931 7.42495 7.59493 7.85229 8.02421 8.29774 8.95862 9.12676 9.17440 9.74016 10.53120 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.033861 B = 0.005535 C = 0.004961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.714734 B = 5057.837321 C = 5642.278967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C 0.271 3.729 3 C 0.213 3.787 4 N -0.410 5.410 5 C -0.310 4.310 6 H 0.110 0.890 7 C 0.034 3.966 8 N -0.862 5.862 9 Si 0.935 3.065 10 H -0.269 1.269 11 H -0.283 1.283 12 H -0.271 1.271 13 C 0.512 3.488 14 O -0.574 6.574 15 C 0.060 3.940 16 C -0.040 4.040 17 N -0.400 5.400 18 C 0.111 3.889 19 C -0.213 4.213 20 C 0.160 3.840 21 N -0.430 5.430 22 C 0.368 3.632 23 N -0.444 5.444 24 H 0.115 0.885 25 H 0.118 0.882 26 H 0.277 0.723 27 H 0.196 0.804 28 H 0.173 0.827 29 H 0.161 0.839 30 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.157 4.231 -16.362 17.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.170 5.170 2 C -0.046 4.046 3 C 0.086 3.914 4 N -0.126 5.126 5 C -0.438 4.438 6 H 0.128 0.872 7 C -0.172 4.172 8 N -0.499 5.499 9 Si 0.761 3.239 10 H -0.194 1.194 11 H -0.208 1.208 12 H -0.196 1.196 13 C 0.300 3.700 14 O -0.458 6.458 15 C -0.074 4.074 16 C -0.174 4.174 17 N -0.078 5.078 18 C -0.021 4.021 19 C -0.236 4.236 20 C -0.028 4.028 21 N -0.141 5.141 22 C 0.020 3.980 23 N -0.169 5.169 24 H 0.133 0.867 25 H 0.135 0.865 26 H 0.088 0.912 27 H 0.213 0.787 28 H 0.190 0.810 29 H 0.179 0.821 30 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 2.151 4.804 -14.714 15.628 hybrid contribution 0.935 -1.338 -0.429 1.688 sum 3.086 3.466 -15.144 15.839 Atomic orbital electron populations 1.80802 1.13754 1.08776 1.13650 1.28828 0.94948 0.92077 0.88788 1.19114 0.82270 0.85387 1.04581 1.43480 1.53052 1.10487 1.05599 1.19769 1.25174 1.16843 0.81970 0.87217 1.25478 0.94696 0.96808 1.00203 1.69841 1.18248 1.33637 1.28159 0.85851 0.79136 0.79218 0.79704 1.19448 1.20824 1.19592 1.16663 0.86178 0.85638 0.81506 1.90653 1.54169 1.15079 1.85904 1.21376 1.00676 0.90504 0.94887 1.22547 1.10964 0.95824 0.88079 1.43907 1.41785 1.15482 1.06602 1.22177 0.97646 1.00528 0.81741 1.21729 1.05482 0.93798 1.02638 1.23248 0.93203 0.98523 0.87847 1.67941 1.14501 1.20021 1.11651 1.22188 1.02517 0.84974 0.88280 1.71170 1.20232 1.13941 1.11531 0.86749 0.86540 0.91194 0.78665 0.80994 0.82121 0.80396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -13.31 18.54 42.15 0.78 -12.53 16 2 C 0.27 6.97 12.45 -20.76 -0.26 6.72 16 3 C 0.21 4.99 4.75 -6.83 -0.03 4.95 16 4 N -0.41 -10.45 2.59 -119.14 -0.31 -10.76 16 5 C -0.31 -8.21 9.22 -15.00 -0.14 -8.35 16 6 H 0.11 2.95 7.48 -52.49 -0.39 2.56 16 7 C 0.03 0.87 4.94 -17.46 -0.09 0.78 16 8 N -0.86 -22.75 9.44 55.50 0.52 -22.22 16 9 Si 0.94 19.79 29.59 -169.99 -5.03 14.76 16 10 H -0.27 -5.51 7.11 56.52 0.40 -5.10 16 11 H -0.28 -5.96 7.11 56.52 0.40 -5.55 16 12 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 13 C 0.51 12.73 7.54 -12.50 -0.09 12.64 16 14 O -0.57 -15.44 16.60 5.25 0.09 -15.35 16 15 C 0.06 1.26 6.61 -83.43 -0.55 0.71 16 16 C -0.04 -0.68 11.48 -16.21 -0.19 -0.86 16 17 N -0.40 -5.89 2.93 -64.10 -0.19 -6.08 16 18 C 0.11 1.03 11.05 -16.38 -0.18 0.85 16 19 C -0.21 -1.54 10.06 -39.79 -0.40 -1.94 16 20 C 0.16 1.55 11.27 -17.07 -0.19 1.36 16 21 N -0.43 -6.66 10.48 -13.67 -0.14 -6.80 16 22 C 0.37 6.60 8.90 -322.38 -2.87 3.73 16 23 N -0.44 -9.27 7.03 -11.03 -0.08 -9.35 16 24 H 0.11 2.64 6.64 -51.93 -0.34 2.29 16 25 H 0.12 2.52 5.31 -51.93 -0.28 2.24 16 26 H 0.28 7.03 8.31 -40.82 -0.34 6.69 16 27 H 0.20 2.74 8.06 -52.49 -0.42 2.32 16 28 H 0.17 0.88 8.06 -52.49 -0.42 0.46 16 29 H 0.16 0.46 8.06 -52.49 -0.42 0.04 16 30 H 0.18 0.96 8.06 -52.49 -0.42 0.54 16 LS Contribution 276.77 15.07 4.17 4.17 Total: -1.00 -35.49 276.77 -7.01 -42.51 By element: Atomic # 1 Polarization: 2.92 SS G_CDS: -1.84 Total: 1.08 kcal Atomic # 6 Polarization: 25.57 SS G_CDS: -4.99 Total: 20.57 kcal Atomic # 7 Polarization: -68.32 SS G_CDS: 0.59 Total: -67.74 kcal Atomic # 8 Polarization: -15.44 SS G_CDS: 0.09 Total: -15.35 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -5.03 Total: 14.76 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -35.49 -7.01 -42.51 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115932033.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.580 kcal (2) G-P(sol) polarization free energy of solvation -35.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 138.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.507 kcal (6) G-S(sol) free energy of system = (1) + (5) 131.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds