Wall clock time and date at job start Mon Mar 30 2020 00:58:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46503 * 109.47442 * 1.67506 * 3 2 1 5 5 C 1.36909 * 119.99947 * 263.13990 * 4 3 2 6 6 H 1.08000 * 119.99639 * 203.11935 * 5 4 3 7 7 C 1.39002 * 120.00253 * 23.11524 * 5 4 3 8 8 N 1.31391 * 120.00211 * 16.66563 * 7 5 4 9 9 Si 1.86804 * 120.00123 * 196.65946 * 7 5 4 10 10 H 1.48503 * 109.46970 * 60.00254 * 9 7 5 11 11 H 1.48501 * 109.47206 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47286 * 300.00414 * 9 7 5 13 13 C 1.34784 * 120.00011 * 83.13232 * 4 3 2 14 14 O 1.21628 * 120.00049 * 184.16663 * 13 4 3 15 15 C 1.47468 * 119.99618 * 4.16707 * 13 4 3 16 16 C 1.36588 * 125.92433 * 173.91146 * 15 13 4 17 17 N 1.36194 * 106.99985 * 180.02562 * 16 15 13 18 18 C 1.36667 * 132.43852 * 180.02562 * 17 16 15 19 19 C 1.35487 * 119.10256 * 179.97438 * 18 17 16 20 20 C 1.40292 * 119.35664 * 0.03197 * 19 18 17 21 21 N 1.31150 * 120.41693 * 359.97438 * 20 19 18 22 22 C 1.34278 * 120.94475 * 359.97438 * 21 20 19 23 23 N 1.32225 * 131.64274 * 180.02562 * 22 21 20 24 24 H 1.09003 * 109.47250 * 241.67851 * 3 2 1 25 25 H 1.09000 * 109.47410 * 121.67468 * 3 2 1 26 26 H 0.96998 * 120.00376 * 179.97438 * 8 7 5 27 27 H 1.07995 * 126.49944 * 359.97438 * 16 15 13 28 28 H 1.07993 * 120.44830 * 359.96656 * 18 17 16 29 29 H 1.08000 * 120.32596 * 180.02562 * 19 18 17 30 30 H 1.08000 * 119.79454 * 180.25805 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0970 -1.3797 -0.0404 5 6 3.4591 -2.0119 1.1188 6 1 4.1458 -2.8449 1.0878 7 6 2.9428 -1.5816 2.3356 8 7 1.8812 -0.8079 2.3621 9 14 3.7583 -2.1035 3.9332 10 1 5.1641 -1.6251 3.9506 11 1 3.0208 -1.5160 5.0804 12 1 3.7382 -3.5846 4.0385 13 6 3.1904 -2.0274 -1.2187 14 8 3.5238 -3.1968 -1.2451 15 6 2.8883 -1.3182 -2.4758 16 6 3.0546 -1.8161 -3.7368 17 7 2.6593 -0.8435 -4.6043 18 6 2.6091 -0.7897 -5.9690 19 6 2.1585 0.3390 -6.5679 20 6 1.7554 1.4242 -5.7754 21 7 1.8130 1.3487 -4.4673 22 6 2.2561 0.2368 -3.8587 23 7 2.4007 -0.0666 -2.5799 24 1 2.9711 0.4884 0.9047 25 1 2.9711 0.5404 -0.8746 26 1 1.5208 -0.5080 3.2112 27 1 3.4294 -2.7950 -3.9966 28 1 2.9244 -1.6354 -6.5620 29 1 2.1101 0.4027 -7.6449 30 1 1.3911 2.3258 -6.2453 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001115932033.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:32 Heat of formation + Delta-G solvation = 108.476324 kcal Electronic energy + Delta-G solvation = -19942.887889 eV Core-core repulsion = 16740.660277 eV Total energy + Delta-G solvation = -3202.227612 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.081 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -44.01007 -40.62290 -38.86522 -37.55542 -36.12737 -35.61436 -33.79434 -31.95487 -30.37245 -29.19036 -27.44266 -25.66652 -24.26988 -23.71930 -21.05993 -19.74827 -19.42767 -18.65140 -18.13151 -17.63656 -17.27097 -16.94244 -16.38287 -15.95727 -15.38964 -15.22607 -15.02521 -14.71823 -14.57863 -13.85563 -13.78220 -13.43105 -13.31896 -13.13319 -12.94150 -12.80261 -12.38679 -12.26894 -12.12367 -11.38769 -11.13895 -10.85492 -10.61754 -10.10926 -9.94615 -9.28718 -8.42634 -6.05689 -0.41856 0.06295 1.01944 1.34855 1.47388 1.52237 1.59591 1.96579 2.29494 2.35800 2.42037 2.53230 2.67749 3.02141 3.06870 3.51156 3.63126 3.75288 3.78242 4.07929 4.23450 4.43501 4.61146 4.73789 4.78487 4.83513 5.23886 5.32209 5.41587 5.60705 5.99183 6.31008 6.49372 6.86946 7.01774 7.10400 7.24534 7.82343 8.60130 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.033861 B = 0.005535 C = 0.004961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.714734 B = 5057.837321 C = 5642.278967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C 0.284 3.716 3 C 0.226 3.774 4 N -0.429 5.429 5 C -0.343 4.343 6 H 0.095 0.905 7 C 0.001 3.999 8 N -0.892 5.892 9 Si 1.003 2.997 10 H -0.255 1.255 11 H -0.278 1.278 12 H -0.275 1.275 13 C 0.513 3.487 14 O -0.606 6.606 15 C 0.007 3.993 16 C -0.016 4.016 17 N -0.402 5.402 18 C 0.100 3.900 19 C -0.188 4.188 20 C 0.183 3.817 21 N -0.487 5.487 22 C 0.361 3.639 23 N -0.492 5.492 24 H 0.113 0.887 25 H 0.135 0.865 26 H 0.277 0.723 27 H 0.220 0.780 28 H 0.220 0.780 29 H 0.222 0.778 30 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.545 4.956 -20.102 21.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.205 5.205 2 C -0.033 4.033 3 C 0.099 3.901 4 N -0.145 5.145 5 C -0.470 4.470 6 H 0.113 0.887 7 C -0.202 4.202 8 N -0.529 5.529 9 Si 0.825 3.175 10 H -0.179 1.179 11 H -0.203 1.203 12 H -0.200 1.200 13 C 0.303 3.697 14 O -0.492 6.492 15 C -0.125 4.125 16 C -0.151 4.151 17 N -0.079 5.079 18 C -0.029 4.029 19 C -0.210 4.210 20 C -0.003 4.003 21 N -0.201 5.201 22 C 0.011 3.989 23 N -0.217 5.217 24 H 0.131 0.869 25 H 0.152 0.848 26 H 0.087 0.913 27 H 0.237 0.763 28 H 0.236 0.764 29 H 0.238 0.762 30 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 2.548 5.537 -18.501 19.479 hybrid contribution 0.748 -1.438 0.217 1.636 sum 3.296 4.098 -18.284 19.026 Atomic orbital electron populations 1.80758 1.14710 1.09963 1.15079 1.29295 0.95437 0.90979 0.87577 1.19156 0.80864 0.84872 1.05179 1.43613 1.53965 1.11177 1.05766 1.19824 1.26315 1.17644 0.83255 0.88724 1.26280 0.94706 0.96418 1.02799 1.69933 1.19351 1.34872 1.28730 0.84851 0.78766 0.78339 0.75517 1.17944 1.20316 1.20022 1.17253 0.84232 0.85526 0.82705 1.90588 1.55166 1.16527 1.86947 1.20787 1.05153 0.91931 0.94581 1.22708 1.08831 0.96459 0.87143 1.43963 1.41514 1.13961 1.08492 1.23281 0.97023 1.03100 0.79454 1.22462 1.01828 0.91506 1.05163 1.24355 0.89021 1.00645 0.86320 1.68068 1.17843 1.19672 1.14486 1.22236 1.02264 0.86327 0.88068 1.70830 1.22391 1.14161 1.14355 0.86911 0.84807 0.91257 0.76304 0.76352 0.76178 0.75868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.52 -29.60 18.54 20.01 0.37 -29.23 16 2 C 0.28 15.27 12.45 89.44 1.11 16.38 16 3 C 0.23 11.12 4.75 84.57 0.40 11.52 16 4 N -0.43 -23.05 2.59 -649.09 -1.68 -24.73 16 5 C -0.34 -19.11 9.22 84.08 0.78 -18.33 16 6 H 0.10 5.40 7.48 -2.91 -0.02 5.38 16 7 C 0.00 0.05 4.94 84.94 0.42 0.47 16 8 N -0.89 -48.72 9.44 21.67 0.20 -48.52 16 9 Si 1.00 41.63 29.59 68.60 2.03 43.66 16 10 H -0.26 -9.93 7.11 99.48 0.71 -9.23 16 11 H -0.28 -11.22 7.11 99.48 0.71 -10.51 16 12 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 13 C 0.51 26.85 7.54 86.67 0.65 27.51 16 14 O -0.61 -34.18 16.60 -4.12 -0.07 -34.25 16 15 C 0.01 0.32 6.61 40.75 0.27 0.59 16 16 C -0.02 -0.53 11.48 83.63 0.96 0.44 16 17 N -0.40 -10.90 2.93 -356.71 -1.05 -11.95 16 18 C 0.10 1.32 11.05 83.30 0.92 2.24 16 19 C -0.19 -1.45 10.06 22.13 0.22 -1.23 16 20 C 0.18 2.61 11.27 85.29 0.96 3.57 16 21 N -0.49 -14.09 10.48 -197.15 -2.07 -16.16 16 22 C 0.36 12.64 8.90 261.34 2.33 14.97 16 23 N -0.49 -21.13 7.03 -188.81 -1.33 -22.46 16 24 H 0.11 5.49 6.64 -2.39 -0.02 5.48 16 25 H 0.14 6.13 5.31 -2.39 -0.01 6.12 16 26 H 0.28 14.48 8.31 -92.71 -0.77 13.71 16 27 H 0.22 5.83 8.06 -2.91 -0.02 5.81 16 28 H 0.22 0.75 8.06 -2.91 -0.02 0.72 16 29 H 0.22 -0.81 8.06 -2.91 -0.02 -0.84 16 30 H 0.23 0.97 8.06 -2.91 -0.02 0.94 16 Total: -1.00 -85.37 276.77 6.64 -78.73 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: 1.21 Total: 6.79 kcal Atomic # 6 Polarization: 49.10 SS G_CDS: 9.02 Total: 58.12 kcal Atomic # 7 Polarization: -147.50 SS G_CDS: -5.55 Total: -153.05 kcal Atomic # 8 Polarization: -34.18 SS G_CDS: -0.07 Total: -34.25 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 2.03 Total: 43.66 kcal Total: -85.37 6.64 -78.73 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115932033.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.202 kcal (2) G-P(sol) polarization free energy of solvation -85.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.726 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds