Wall clock time and date at job start Mon Mar 30 2020 00:54:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 C 1.81395 * 103.00013 * 2 1 4 4 C 1.50697 * 109.47229 * 180.02562 * 3 2 1 5 5 N 1.29951 * 126.29121 * 89.97229 * 4 3 2 6 6 O 1.21293 * 110.25189 * 180.02562 * 5 4 3 7 7 C 1.33641 * 109.81516 * 0.02562 * 6 5 4 8 8 C 1.50701 * 126.55500 * 179.97438 * 7 6 5 9 9 C 1.52997 * 109.47212 * 270.02472 * 8 7 6 10 10 C 1.50697 * 109.47466 * 179.97438 * 9 8 7 11 11 O 1.21297 * 119.99608 * 0.02562 * 10 9 8 12 12 N 1.34777 * 120.00369 * 180.02562 * 10 9 8 13 13 C 1.37097 * 120.00219 * 180.02562 * 12 10 9 14 14 H 1.07998 * 120.00025 * 359.97438 * 13 12 10 15 15 C 1.38953 * 119.99977 * 180.02562 * 13 12 10 16 16 N 1.31410 * 119.99913 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 119.99747 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47430 * 89.99978 * 17 15 13 19 19 H 1.48498 * 109.47118 * 210.00039 * 17 15 13 20 20 H 1.48503 * 109.47136 * 329.99573 * 17 15 13 21 21 N 1.31130 * 106.89473 * 0.22398 * 7 6 5 22 22 H 1.08996 * 109.47054 * 300.00095 * 1 2 3 23 23 H 1.09001 * 109.46648 * 60.00433 * 1 2 3 24 24 H 1.09004 * 109.46952 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47499 * 59.99777 * 3 2 1 26 26 H 1.09003 * 109.46775 * 299.99720 * 3 2 1 27 27 H 1.09002 * 109.47060 * 30.02527 * 8 7 6 28 28 H 1.09001 * 109.47380 * 150.02615 * 8 7 6 29 29 H 1.09002 * 109.47153 * 299.99998 * 9 8 7 30 30 H 1.08998 * 109.47533 * 59.99628 * 9 8 7 31 31 H 0.97003 * 119.99640 * 0.02562 * 12 10 9 32 32 H 0.97002 * 119.99781 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7195 1.9373 -0.0006 5 7 4.4833 2.0236 -1.0484 6 8 5.6418 2.1546 -0.7138 7 6 5.7299 2.1641 0.6197 8 6 6.9893 2.3059 1.4351 9 6 7.5775 0.9205 1.7100 10 6 8.8372 1.0622 2.5248 11 8 9.2261 2.1631 2.8537 12 7 9.5318 -0.0342 2.8881 13 6 10.6776 0.0947 3.6298 14 1 11.0238 1.0749 3.9227 15 6 11.3939 -1.0356 4.0039 16 7 10.9729 -2.2282 3.6471 17 14 12.9554 -0.8599 5.0139 18 1 12.6173 -0.9001 6.4593 19 1 13.8819 -1.9746 4.6910 20 1 13.6087 0.4349 4.6941 21 7 4.5115 2.0211 1.0831 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8032 2.2371 0.8899 26 1 1.8032 2.2370 -0.8900 27 1 7.7137 2.9052 0.8835 28 1 6.7569 2.7960 2.3805 29 1 6.8531 0.3211 2.2616 30 1 7.8099 0.4302 0.7647 31 1 9.2210 -0.9145 2.6247 32 1 11.4727 -3.0173 3.9085 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116340480.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:16 Heat of formation + Delta-G solvation = 21.326033 kcal Electronic energy + Delta-G solvation = -17497.084620 eV Core-core repulsion = 14394.229088 eV Total energy + Delta-G solvation = -3102.855532 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.078 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -45.66061 -38.37789 -36.21474 -34.67431 -33.86031 -31.54077 -31.09648 -29.81374 -28.96313 -26.19665 -24.25813 -23.39553 -21.37723 -19.25235 -18.23402 -17.82562 -17.62429 -16.52000 -16.17717 -15.05634 -14.96160 -14.64134 -14.51097 -14.33288 -14.03212 -13.85644 -13.23435 -13.05866 -12.83714 -12.62467 -12.24837 -11.94469 -11.57456 -11.45998 -11.15100 -11.08996 -10.82383 -10.49678 -10.41553 -10.25392 -9.88062 -9.56505 -8.51041 -8.05059 -8.02862 -6.45803 -3.87252 0.75041 1.30172 2.06425 2.41441 2.78852 3.15814 3.25443 3.30827 3.36287 3.81649 3.82774 4.14849 4.57522 4.73593 4.75005 4.78998 4.91597 5.11243 5.17761 5.26607 5.30754 5.40145 5.58101 5.81190 5.86529 6.16471 6.21755 6.30910 7.51633 7.99804 8.07623 8.53275 9.11797 9.47814 9.97170 10.71479 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.031747 B = 0.003152 C = 0.002956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.770856 B = 8879.832063 C = 9469.540292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 S -0.224 6.224 3 C 0.002 3.998 4 C 0.175 3.825 5 N -0.373 5.373 6 O 0.083 5.917 7 C 0.202 3.798 8 C -0.009 4.009 9 C -0.128 4.128 10 C 0.441 3.559 11 O -0.597 6.597 12 N -0.556 5.556 13 C -0.303 4.303 14 H 0.105 0.895 15 C 0.024 3.976 16 N -0.898 5.898 17 Si 0.931 3.069 18 H -0.277 1.277 19 H -0.283 1.283 20 H -0.269 1.269 21 N -0.474 5.474 22 H 0.080 0.920 23 H 0.079 0.921 24 H 0.106 0.894 25 H 0.114 0.886 26 H 0.108 0.892 27 H 0.111 0.889 28 H 0.119 0.881 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.394 0.606 32 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.871 4.535 -7.670 19.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.294 4.294 2 S -0.001 6.001 3 C -0.147 4.147 4 C -0.098 4.098 5 N -0.081 5.081 6 O 0.022 5.978 7 C -0.018 4.018 8 C -0.048 4.048 9 C -0.170 4.170 10 C 0.227 3.773 11 O -0.484 6.484 12 N -0.191 5.191 13 C -0.433 4.433 14 H 0.123 0.877 15 C -0.178 4.178 16 N -0.539 5.539 17 Si 0.758 3.242 18 H -0.203 1.203 19 H -0.209 1.209 20 H -0.193 1.193 21 N -0.208 5.208 22 H 0.099 0.901 23 H 0.098 0.902 24 H 0.125 0.875 25 H 0.132 0.868 26 H 0.126 0.874 27 H 0.129 0.871 28 H 0.137 0.863 29 H 0.106 0.894 30 H 0.104 0.896 31 H 0.228 0.772 32 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -17.500 4.134 -7.918 19.648 hybrid contribution -0.199 0.378 0.360 0.559 sum -17.699 4.512 -7.557 19.767 Atomic orbital electron populations 1.23458 0.93774 1.07006 1.05188 1.87407 1.07279 1.07341 1.98045 1.21393 0.88301 0.97641 1.07370 1.24655 0.98100 1.02525 0.84493 1.74628 0.89891 1.19965 1.23629 1.85318 1.22355 1.64766 1.25323 1.29200 0.97152 0.93760 0.81648 1.20057 0.86522 0.99747 0.98497 1.21472 0.97847 0.95923 1.01773 1.19576 0.86395 0.85470 0.85832 1.90534 1.71453 1.25799 1.60598 1.41872 1.22902 1.07476 1.46858 1.19735 1.00047 0.95081 1.28388 0.87731 1.25300 0.99787 0.94607 0.98140 1.69616 1.40393 0.97874 1.45994 0.85842 0.80709 0.78075 0.79585 1.20335 1.20889 1.19336 1.71929 1.00002 1.20187 1.28658 0.90064 0.90242 0.87544 0.86810 0.87410 0.87115 0.86317 0.89441 0.89649 0.77227 0.91729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.77 10.76 101.05 1.09 0.32 16 2 S -0.22 -2.42 22.36 -107.50 -2.40 -4.82 16 3 C 0.00 0.02 6.57 36.00 0.24 0.26 16 4 C 0.18 2.41 7.48 -156.37 -1.17 1.24 16 5 N -0.37 -5.47 12.16 30.90 0.38 -5.10 16 6 O 0.08 1.20 11.31 18.11 0.20 1.41 16 7 C 0.20 2.88 7.77 -13.06 -0.10 2.78 16 8 C -0.01 -0.13 5.13 -27.88 -0.14 -0.27 16 9 C -0.13 -2.10 5.68 -27.89 -0.16 -2.26 16 10 C 0.44 9.82 7.78 -10.99 -0.09 9.73 16 11 O -0.60 -15.12 15.56 5.54 0.09 -15.03 16 12 N -0.56 -13.70 5.29 -10.96 -0.06 -13.76 16 13 C -0.30 -8.25 9.68 -14.93 -0.14 -8.39 16 14 H 0.10 2.96 7.16 -52.49 -0.38 2.59 16 15 C 0.02 0.63 5.50 -17.47 -0.10 0.53 16 16 N -0.90 -24.13 13.05 55.50 0.72 -23.41 16 17 Si 0.93 20.66 29.55 -169.99 -5.02 15.64 16 18 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16 19 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 20 H -0.27 -5.94 7.11 56.52 0.40 -5.53 16 21 N -0.47 -7.08 11.55 -9.87 -0.11 -7.20 16 22 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 23 H 0.08 0.39 8.14 -51.92 -0.42 -0.04 16 24 H 0.11 0.56 8.14 -51.92 -0.42 0.14 16 25 H 0.11 0.97 8.14 -51.93 -0.42 0.54 16 26 H 0.11 0.87 8.14 -51.92 -0.42 0.45 16 27 H 0.11 1.49 8.10 -51.93 -0.42 1.07 16 28 H 0.12 1.73 8.10 -51.93 -0.42 1.31 16 29 H 0.09 1.37 8.14 -51.93 -0.42 0.94 16 30 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 31 H 0.39 9.35 7.90 -40.82 -0.32 9.03 16 32 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 305.04 15.07 4.60 4.60 Total: -1.00 -31.45 305.04 -5.82 -37.27 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -3.63 Total: 6.46 kcal Atomic # 6 Polarization: 4.52 SS G_CDS: -0.57 Total: 3.94 kcal Atomic # 7 Polarization: -50.39 SS G_CDS: 0.93 Total: -49.46 kcal Atomic # 8 Polarization: -13.92 SS G_CDS: 0.29 Total: -13.63 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Atomic # 16 Polarization: -2.42 SS G_CDS: -2.40 Total: -4.82 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -31.45 -5.82 -37.27 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116340480.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.598 kcal (2) G-P(sol) polarization free energy of solvation -31.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.272 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds