Wall clock time and date at job start Mon Mar 30 2020 00:54:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 C 1.81395 * 103.00013 * 2 1 4 4 C 1.50697 * 109.47229 * 180.02562 * 3 2 1 5 5 N 1.29951 * 126.29121 * 89.97229 * 4 3 2 6 6 O 1.21293 * 110.25189 * 180.02562 * 5 4 3 7 7 C 1.33641 * 109.81516 * 0.02562 * 6 5 4 8 8 C 1.50701 * 126.55500 * 179.97438 * 7 6 5 9 9 C 1.52997 * 109.47212 * 270.02472 * 8 7 6 10 10 C 1.50697 * 109.47466 * 179.97438 * 9 8 7 11 11 O 1.21297 * 119.99608 * 0.02562 * 10 9 8 12 12 N 1.34777 * 120.00369 * 180.02562 * 10 9 8 13 13 C 1.37097 * 120.00219 * 180.02562 * 12 10 9 14 14 H 1.07998 * 120.00025 * 359.97438 * 13 12 10 15 15 C 1.38953 * 119.99977 * 180.02562 * 13 12 10 16 16 N 1.31410 * 119.99913 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 119.99747 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47430 * 89.99978 * 17 15 13 19 19 H 1.48498 * 109.47118 * 210.00039 * 17 15 13 20 20 H 1.48503 * 109.47136 * 329.99573 * 17 15 13 21 21 N 1.31130 * 106.89473 * 0.22398 * 7 6 5 22 22 H 1.08996 * 109.47054 * 300.00095 * 1 2 3 23 23 H 1.09001 * 109.46648 * 60.00433 * 1 2 3 24 24 H 1.09004 * 109.46952 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47499 * 59.99777 * 3 2 1 26 26 H 1.09003 * 109.46775 * 299.99720 * 3 2 1 27 27 H 1.09002 * 109.47060 * 30.02527 * 8 7 6 28 28 H 1.09001 * 109.47380 * 150.02615 * 8 7 6 29 29 H 1.09002 * 109.47153 * 299.99998 * 9 8 7 30 30 H 1.08998 * 109.47533 * 59.99628 * 9 8 7 31 31 H 0.97003 * 119.99640 * 0.02562 * 12 10 9 32 32 H 0.97002 * 119.99781 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7195 1.9373 -0.0006 5 7 4.4833 2.0236 -1.0484 6 8 5.6418 2.1546 -0.7138 7 6 5.7299 2.1641 0.6197 8 6 6.9893 2.3059 1.4351 9 6 7.5775 0.9205 1.7100 10 6 8.8372 1.0622 2.5248 11 8 9.2261 2.1631 2.8537 12 7 9.5318 -0.0342 2.8881 13 6 10.6776 0.0947 3.6298 14 1 11.0238 1.0749 3.9227 15 6 11.3939 -1.0356 4.0039 16 7 10.9729 -2.2282 3.6471 17 14 12.9554 -0.8599 5.0139 18 1 12.6173 -0.9001 6.4593 19 1 13.8819 -1.9746 4.6910 20 1 13.6087 0.4349 4.6941 21 7 4.5115 2.0211 1.0831 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8032 2.2371 0.8899 26 1 1.8032 2.2370 -0.8900 27 1 7.7137 2.9052 0.8835 28 1 6.7569 2.7960 2.3805 29 1 6.8531 0.3211 2.2616 30 1 7.8099 0.4302 0.7647 31 1 9.2210 -0.9145 2.6247 32 1 11.4727 -3.0173 3.9085 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116340480.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:15 Heat of formation + Delta-G solvation = -1.226696 kcal Electronic energy + Delta-G solvation = -17498.062580 eV Core-core repulsion = 14394.229088 eV Total energy + Delta-G solvation = -3103.833492 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.078 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -46.75671 -40.20066 -37.30515 -36.21864 -35.48842 -33.31313 -32.51614 -30.63855 -29.56902 -27.83208 -25.86039 -24.56856 -22.51766 -20.98902 -19.89897 -19.26715 -18.71689 -17.79729 -17.36062 -16.60732 -16.42287 -15.96285 -15.77788 -15.50101 -14.99087 -14.86920 -14.49006 -14.20311 -13.86073 -13.59344 -13.48666 -13.39380 -13.35622 -12.90437 -12.52437 -12.39001 -12.24596 -12.10134 -12.09629 -11.49832 -11.32943 -10.88864 -10.38344 -10.01505 -8.84175 -8.45558 -5.94581 -0.19052 0.33556 1.32209 1.40072 1.44687 1.53261 1.57100 1.65835 2.03888 2.31232 2.40840 2.81181 3.22210 3.24217 3.72823 3.87525 3.99267 4.12393 4.23423 4.34241 4.34667 4.40681 4.59915 4.65647 4.72475 4.88616 4.93079 5.01192 5.43595 5.99946 6.57603 6.98568 7.12018 7.55452 8.08304 8.71726 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.031747 B = 0.003152 C = 0.002956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.770856 B = 8879.832063 C = 9469.540292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 S -0.295 6.295 3 C 0.011 3.989 4 C 0.176 3.824 5 N -0.387 5.387 6 O 0.079 5.921 7 C 0.207 3.793 8 C 0.001 3.999 9 C -0.115 4.115 10 C 0.445 3.555 11 O -0.628 6.628 12 N -0.571 5.571 13 C -0.334 4.334 14 H 0.085 0.915 15 C -0.014 4.014 16 N -0.921 5.921 17 Si 0.993 3.007 18 H -0.271 1.271 19 H -0.273 1.273 20 H -0.270 1.270 21 N -0.490 5.490 22 H 0.095 0.905 23 H 0.096 0.904 24 H 0.115 0.885 25 H 0.130 0.870 26 H 0.128 0.872 27 H 0.119 0.881 28 H 0.116 0.884 29 H 0.099 0.901 30 H 0.106 0.894 31 H 0.397 0.603 32 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.109 4.630 -7.906 21.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.274 4.274 2 S -0.072 6.072 3 C -0.138 4.138 4 C -0.097 4.097 5 N -0.097 5.097 6 O 0.020 5.980 7 C -0.013 4.013 8 C -0.039 4.039 9 C -0.156 4.156 10 C 0.233 3.767 11 O -0.516 6.516 12 N -0.207 5.207 13 C -0.463 4.463 14 H 0.103 0.897 15 C -0.214 4.214 16 N -0.561 5.561 17 Si 0.817 3.183 18 H -0.197 1.197 19 H -0.198 1.198 20 H -0.195 1.195 21 N -0.224 5.224 22 H 0.113 0.887 23 H 0.115 0.885 24 H 0.134 0.866 25 H 0.148 0.852 26 H 0.147 0.853 27 H 0.138 0.862 28 H 0.135 0.865 29 H 0.117 0.883 30 H 0.125 0.875 31 H 0.231 0.769 32 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -18.749 4.227 -8.168 20.883 hybrid contribution 0.065 0.377 0.400 0.554 sum -18.684 4.603 -7.767 20.751 Atomic orbital electron populations 1.23524 0.89035 1.08080 1.06729 1.87620 1.12571 1.08784 1.98271 1.21534 0.86109 0.96947 1.09192 1.25264 0.99538 1.01161 0.83772 1.74622 0.90021 1.20896 1.24135 1.85303 1.22513 1.64948 1.25223 1.29010 0.96922 0.93690 0.81669 1.19911 0.86770 0.98507 0.98683 1.21356 0.94925 0.97667 1.01673 1.20508 0.87206 0.84301 0.84705 1.90512 1.72632 1.26937 1.61539 1.41966 1.22958 1.08233 1.47498 1.19729 1.01767 0.94665 1.30182 0.89750 1.26073 1.02413 0.94091 0.98777 1.69680 1.41497 0.98351 1.46613 0.84920 0.77141 0.78084 0.78179 1.19695 1.19798 1.19452 1.71943 1.00422 1.20623 1.29395 0.88655 0.88549 0.86636 0.85169 0.85345 0.86244 0.86534 0.88292 0.87533 0.76923 0.91307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.01 10.76 113.37 1.22 0.21 16 2 S -0.30 -5.97 22.36 -56.49 -1.26 -7.24 16 3 C 0.01 0.20 6.57 71.24 0.47 0.66 16 4 C 0.18 4.58 7.48 138.46 1.04 5.62 16 5 N -0.39 -10.91 12.16 -60.33 -0.73 -11.65 16 6 O 0.08 2.19 11.31 74.87 0.85 3.04 16 7 C 0.21 5.65 7.77 88.38 0.69 6.34 16 8 C 0.00 0.01 5.13 29.85 0.15 0.17 16 9 C -0.11 -3.62 5.68 29.85 0.17 -3.45 16 10 C 0.44 19.78 7.78 87.66 0.68 20.47 16 11 O -0.63 -32.03 15.56 -3.08 -0.05 -32.08 16 12 N -0.57 -28.41 5.29 -306.98 -1.62 -30.03 16 13 C -0.33 -18.47 9.68 84.04 0.81 -17.65 16 14 H 0.08 4.92 7.16 -2.91 -0.02 4.90 16 15 C -0.01 -0.72 5.50 84.93 0.47 -0.25 16 16 N -0.92 -49.37 13.05 21.66 0.28 -49.08 16 17 Si 0.99 42.20 29.55 68.60 2.03 44.22 16 18 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 19 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 20 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 21 N -0.49 -14.01 11.55 -303.20 -3.50 -17.52 16 22 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 23 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 24 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 25 H 0.13 1.91 8.14 -2.39 -0.02 1.89 16 26 H 0.13 1.77 8.14 -2.39 -0.02 1.75 16 27 H 0.12 3.08 8.10 -2.39 -0.02 3.06 16 28 H 0.12 3.29 8.10 -2.39 -0.02 3.27 16 29 H 0.10 2.95 8.14 -2.39 -0.02 2.93 16 30 H 0.11 2.96 8.14 -2.39 -0.02 2.94 16 31 H 0.40 18.99 7.90 -92.71 -0.73 18.26 16 32 H 0.28 13.96 8.31 -92.71 -0.77 13.19 16 Total: -1.00 -67.55 305.04 2.10 -65.45 By element: Atomic # 1 Polarization: 22.36 SS G_CDS: 0.42 Total: 22.78 kcal Atomic # 6 Polarization: 6.41 SS G_CDS: 5.69 Total: 12.10 kcal Atomic # 7 Polarization: -102.70 SS G_CDS: -5.58 Total: -108.28 kcal Atomic # 8 Polarization: -29.84 SS G_CDS: 0.80 Total: -29.04 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 2.03 Total: 44.22 kcal Atomic # 16 Polarization: -5.97 SS G_CDS: -1.26 Total: -7.24 kcal Total: -67.55 2.10 -65.45 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116340480.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.220 kcal (2) G-P(sol) polarization free energy of solvation -67.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds