Wall clock time and date at job start Mon Mar 30 2020 01:28:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 N 1.40089 * 126.03075 * 2 1 4 4 C 1.30831 * 108.23449 * 179.75480 * 3 2 1 5 5 C 1.39867 * 108.21924 * 0.44310 * 4 3 2 6 6 C 1.50709 * 126.05017 * 179.81803 * 5 4 3 7 7 N 1.46901 * 109.46798 * 259.69124 * 6 5 4 8 8 C 1.47962 * 110.99645 * 170.00157 * 7 6 5 9 9 C 1.53939 * 86.17954 * 222.41370 * 8 7 6 10 10 O 1.42901 * 113.73443 * 269.25769 * 9 8 7 11 11 C 1.50699 * 113.73181 * 138.07765 * 9 8 7 12 12 H 1.07999 * 120.00015 * 4.91121 * 11 9 8 13 13 C 1.37879 * 119.99686 * 184.90847 * 11 9 8 14 14 N 1.31521 * 119.99972 * 13.82310 * 13 11 9 15 15 Si 1.86792 * 119.99875 * 193.81760 * 13 11 9 16 16 H 1.48504 * 109.47216 * 180.02562 * 15 13 11 17 17 H 1.48504 * 109.47601 * 300.00327 * 15 13 11 18 18 H 1.48506 * 109.47155 * 60.00602 * 15 13 11 19 19 C 1.47957 * 111.00157 * 70.64161 * 7 6 5 20 20 C 1.34979 * 126.04395 * 180.02562 * 2 1 3 21 21 Cl 1.73604 * 126.13539 * 359.93826 * 20 2 1 22 22 H 1.09006 * 109.46905 * 269.95234 * 1 2 3 23 23 H 1.08991 * 109.47104 * 29.95757 * 1 2 3 24 24 H 1.09004 * 109.46597 * 149.95844 * 1 2 3 25 25 H 1.07996 * 125.89497 * 180.25577 * 4 3 2 26 26 H 1.08996 * 109.47024 * 139.68724 * 6 5 4 27 27 H 1.08995 * 109.46678 * 19.68807 * 6 5 4 28 28 H 1.08999 * 113.76019 * 108.09949 * 8 7 6 29 29 H 1.09000 * 113.85879 * 336.74722 * 8 7 6 30 30 H 0.96693 * 113.99776 * 171.47023 * 10 9 8 31 31 H 0.97001 * 119.99982 * 5.87544 * 14 13 11 32 32 H 1.08994 * 113.76072 * 23.25977 * 19 7 6 33 33 H 1.09001 * 113.75391 * 251.89917 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2890 1.1329 0.0000 4 6 3.5347 0.7330 0.0053 5 6 3.5451 -0.6656 -0.0014 6 6 4.7701 -1.5434 -0.0024 7 7 5.0273 -2.0235 -1.3667 8 6 6.3464 -2.6881 -1.4551 9 6 6.5208 -1.9363 -2.7870 10 8 6.0536 -2.6649 -3.9241 11 6 7.9004 -1.3625 -2.9834 12 1 8.6776 -1.5659 -2.2617 13 6 8.1702 -0.5777 -4.0845 14 7 7.1825 -0.1047 -4.8129 15 14 9.9385 -0.1863 -4.5417 16 1 9.9584 0.6686 -5.7557 17 1 10.5924 0.5334 -3.4193 18 1 10.6708 -1.4494 -4.8133 19 6 5.5012 -0.9235 -2.2354 20 6 2.2592 -1.0914 -0.0005 21 17 1.7279 -2.7441 0.0003 22 1 -0.3633 -0.0009 1.0277 23 1 -0.3633 0.8903 -0.5131 24 1 -0.3633 -0.8897 -0.5145 25 1 4.4050 1.3725 0.0106 26 1 4.6072 -2.3952 0.6579 27 1 5.6281 -0.9702 0.3489 28 1 6.2861 -3.7707 -1.5665 29 1 7.0486 -2.3788 -0.6809 30 1 6.0400 -2.1501 -4.7425 31 1 6.2644 -0.2356 -4.5286 32 1 5.9550 -0.0968 -1.6890 33 1 4.7656 -0.5963 -2.9702 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117721923.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:14 Heat of formation + Delta-G solvation = 63.381946 kcal Electronic energy + Delta-G solvation = -18860.526729 eV Core-core repulsion = 15757.451172 eV Total energy + Delta-G solvation = -3103.075557 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.26338 -39.05388 -36.77533 -34.85879 -33.37961 -32.17327 -31.01045 -28.29829 -26.61762 -25.38525 -24.67664 -22.29518 -21.22070 -20.18503 -18.75003 -17.82235 -17.04252 -15.84974 -15.20957 -14.90479 -14.66335 -14.42148 -13.84410 -13.76790 -13.59490 -13.00250 -12.85017 -12.70977 -12.07709 -11.92325 -11.89836 -11.53116 -11.21172 -10.93990 -10.89871 -10.70637 -10.43909 -10.19686 -10.11977 -9.30862 -9.10791 -8.68748 -8.51240 -8.13882 -7.72178 -6.51527 -4.29379 1.51224 1.68469 2.65839 2.71923 3.37304 3.41270 3.59268 4.37963 4.42114 4.80907 4.95771 5.01894 5.02579 5.21210 5.30045 5.38171 5.61595 5.77694 5.87987 5.94664 6.13180 6.16879 6.37422 6.54548 6.58653 6.67592 6.80616 7.11637 7.14750 7.54521 7.87321 7.92262 8.24383 8.62777 9.10401 9.41242 10.79894 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.029784 B = 0.005093 C = 0.004749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.886111 B = 5496.327677 C = 5894.293875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.373 5.373 3 N -0.279 5.279 4 C 0.066 3.934 5 C -0.194 4.194 6 C 0.093 3.907 7 N -0.470 5.470 8 C 0.019 3.981 9 C 0.221 3.779 10 O -0.566 6.566 11 C -0.619 4.619 12 H 0.058 0.942 13 C 0.035 3.965 14 N -0.902 5.902 15 Si 1.063 2.937 16 H -0.281 1.281 17 H -0.287 1.287 18 H -0.285 1.285 19 C -0.013 4.013 20 C 0.137 3.863 21 Cl -0.001 7.001 22 H 0.076 0.924 23 H 0.093 0.907 24 H 0.087 0.913 25 H 0.190 0.810 26 H 0.074 0.926 27 H 0.049 0.951 28 H 0.075 0.925 29 H 0.068 0.932 30 H 0.370 0.630 31 H 0.271 0.729 32 H 0.064 0.936 33 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.753 -0.577 10.463 15.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.159 5.159 3 N -0.101 5.101 4 C -0.120 4.120 5 C -0.207 4.207 6 C -0.036 4.036 7 N -0.193 5.193 8 C -0.109 4.109 9 C 0.180 3.820 10 O -0.372 6.372 11 C -0.657 4.657 12 H 0.076 0.924 13 C -0.170 4.170 14 N -0.538 5.538 15 Si 0.890 3.110 16 H -0.207 1.207 17 H -0.213 1.213 18 H -0.212 1.212 19 C -0.143 4.143 20 C -0.017 4.017 21 Cl 0.027 6.973 22 H 0.094 0.906 23 H 0.112 0.888 24 H 0.105 0.895 25 H 0.206 0.794 26 H 0.093 0.907 27 H 0.067 0.933 28 H 0.094 0.906 29 H 0.086 0.914 30 H 0.218 0.782 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -11.495 0.174 9.621 14.991 hybrid contribution 0.107 -0.589 1.153 1.299 sum -11.387 -0.416 10.775 15.682 Atomic orbital electron populations 1.21887 0.74052 1.04819 1.03457 1.48513 1.06715 1.02482 1.58186 1.77487 1.01724 1.05826 1.25096 1.23769 0.95306 0.94107 0.98770 1.19664 0.92931 0.93937 1.14133 1.20919 0.92480 0.96111 0.94094 1.68658 1.27582 1.17040 1.05998 1.23985 0.89305 0.99888 0.97761 1.20049 0.91126 0.87344 0.83438 1.86228 1.88605 1.42843 1.19537 1.22349 0.96440 1.34329 1.12537 0.92361 1.25887 1.05937 0.92352 0.92851 1.70884 1.00681 1.42145 1.40131 0.83649 0.74250 0.76578 0.76478 1.20659 1.21322 1.21159 1.24738 0.98073 0.94864 0.96598 1.21359 0.91082 0.82894 1.06366 1.98395 1.90393 1.11655 1.96902 0.90577 0.88838 0.89470 0.79355 0.90744 0.93323 0.90618 0.91400 0.78167 0.91751 0.91823 0.91782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.93 11.31 59.85 0.68 1.60 16 2 N -0.37 -5.30 4.01 -64.91 -0.26 -5.56 16 3 N -0.28 -4.42 12.57 30.62 0.39 -4.03 16 4 C 0.07 1.04 11.96 -17.37 -0.21 0.83 16 5 C -0.19 -3.18 5.14 -105.00 -0.54 -3.72 16 6 C 0.09 1.59 5.09 -4.97 -0.03 1.56 16 7 N -0.47 -9.61 6.25 -239.69 -1.50 -11.10 16 8 C 0.02 0.41 7.36 -2.76 -0.02 0.39 16 9 C 0.22 5.52 1.08 -90.84 -0.10 5.42 16 10 O -0.57 -14.90 13.45 -35.23 -0.47 -15.37 16 11 C -0.62 -16.63 8.56 -34.44 -0.29 -16.92 16 12 H 0.06 1.56 7.85 -52.49 -0.41 1.14 16 13 C 0.04 0.95 5.26 -17.82 -0.09 0.86 16 14 N -0.90 -25.29 12.80 55.43 0.71 -24.58 16 15 Si 1.06 23.93 29.93 -169.99 -5.09 18.84 16 16 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 17 H -0.29 -6.17 7.11 56.52 0.40 -5.77 16 18 H -0.29 -6.25 7.11 56.52 0.40 -5.85 16 19 C -0.01 -0.30 5.90 -2.77 -0.02 -0.32 16 20 C 0.14 2.09 7.45 -17.16 -0.13 1.96 16 21 Cl 0.00 -0.02 28.53 -51.86 -1.48 -1.50 16 22 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 23 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.09 0.70 7.81 -51.93 -0.41 0.30 16 25 H 0.19 2.55 8.06 -52.49 -0.42 2.13 16 26 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 27 H 0.05 0.80 7.69 -51.93 -0.40 0.40 16 28 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 29 H 0.07 1.37 7.75 -51.93 -0.40 0.97 16 30 H 0.37 9.66 6.95 45.56 0.32 9.98 16 31 H 0.27 7.51 5.52 -40.82 -0.23 7.29 16 32 H 0.06 1.44 7.73 -51.93 -0.40 1.04 16 33 H 0.06 1.54 7.79 -51.93 -0.40 1.14 16 LS Contribution 297.71 15.07 4.49 4.49 Total: -1.00 -30.72 297.71 -7.21 -37.92 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: -3.24 Total: 9.24 kcal Atomic # 6 Polarization: -7.59 SS G_CDS: -0.75 Total: -8.34 kcal Atomic # 7 Polarization: -44.62 SS G_CDS: -0.66 Total: -45.28 kcal Atomic # 8 Polarization: -14.90 SS G_CDS: -0.47 Total: -15.37 kcal Atomic # 14 Polarization: 23.93 SS G_CDS: -5.09 Total: 18.84 kcal Atomic # 17 Polarization: -0.02 SS G_CDS: -1.48 Total: -1.50 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -30.72 -7.21 -37.92 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117721923.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.306 kcal (2) G-P(sol) polarization free energy of solvation -30.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.924 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds