Wall clock time and date at job start Mon Mar 30 2020 01:22:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46506 * 109.47035 * 2 1 4 4 C 1.35639 * 124.93166 * 125.00261 * 3 2 1 5 5 C 1.35467 * 107.13046 * 180.02562 * 4 3 2 6 6 Cl 1.73598 * 127.23552 * 179.97438 * 5 4 3 7 7 C 1.41541 * 105.52200 * 0.02562 * 5 4 3 8 8 C 1.47670 * 126.45978 * 180.02562 * 7 5 4 9 9 O 1.21579 * 119.99718 * 359.97438 * 8 7 5 10 10 N 1.34775 * 119.99813 * 179.97438 * 8 7 5 11 11 C 1.46501 * 119.99635 * 180.02562 * 10 8 7 12 12 C 1.52999 * 109.46951 * 180.02562 * 11 10 8 13 13 C 1.50704 * 109.47301 * 179.97438 * 12 11 10 14 14 H 1.08002 * 119.99762 * 0.02562 * 13 12 11 15 15 C 1.37872 * 120.00328 * 179.97438 * 13 12 11 16 16 N 1.31509 * 120.00134 * 180.02562 * 15 13 12 17 17 Si 1.86801 * 119.99676 * 359.97438 * 15 13 12 18 18 H 1.48498 * 109.46893 * 90.00239 * 17 15 13 19 19 H 1.48506 * 109.46967 * 209.99739 * 17 15 13 20 20 H 1.48494 * 109.47445 * 330.00037 * 17 15 13 21 21 N 1.28464 * 124.93418 * 304.69661 * 3 2 1 22 22 H 1.08992 * 109.47060 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.46930 * 299.99770 * 1 2 3 24 24 H 1.09004 * 109.47059 * 59.99372 * 1 2 3 25 25 H 1.09004 * 109.46930 * 240.00230 * 2 1 3 26 26 H 1.09000 * 109.47312 * 120.00174 * 2 1 3 27 27 H 1.08003 * 126.43582 * 359.97438 * 4 3 2 28 28 H 0.96999 * 119.99977 * 0.02562 * 10 8 7 29 29 H 1.09003 * 109.46903 * 299.99715 * 11 10 8 30 30 H 1.09000 * 109.47261 * 59.99751 * 11 10 8 31 31 H 1.08997 * 109.47210 * 299.99566 * 12 11 10 32 32 H 1.09000 * 109.47621 * 59.99629 * 12 11 10 33 33 H 0.97004 * 120.00004 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.8786 1.9009 0.9109 5 6 3.0841 3.1963 0.5720 6 17 4.0956 4.3477 1.3874 7 6 2.2998 3.4139 -0.5860 8 6 2.1837 4.6766 -1.3427 9 8 2.7998 5.6606 -0.9816 10 7 1.3947 4.7384 -2.4336 11 6 1.2799 5.9910 -3.1846 12 6 0.3296 5.7914 -4.3670 13 6 0.2111 7.0801 -5.1393 14 1 0.7591 7.9539 -4.8190 15 6 -0.5961 7.1433 -6.2552 16 7 -0.6991 8.2678 -6.9294 17 14 -1.5423 5.6314 -6.8103 18 1 -2.8741 5.6123 -6.1538 19 1 -1.7176 5.6708 -8.2845 20 1 -0.7874 4.4092 -6.4341 21 7 1.6983 2.2747 -0.8659 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5139 0.8900 27 1 3.3168 1.3800 1.7494 28 1 0.9028 3.9534 -2.7215 29 1 0.8884 6.7713 -2.5320 30 1 2.2627 6.2848 -3.5534 31 1 0.7207 5.0110 -5.0198 32 1 -0.6530 5.4978 -3.9979 33 1 -1.2668 8.3121 -7.7148 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001128024535.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:58 Heat of formation + Delta-G solvation = 3.795796 kcal Electronic energy + Delta-G solvation = -17903.618526 eV Core-core repulsion = 14797.959120 eV Total energy + Delta-G solvation = -3105.659406 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.77488 -40.43454 -37.53711 -36.64796 -35.46563 -34.78764 -32.39803 -31.55860 -30.79655 -27.32421 -25.44098 -23.33939 -22.55106 -22.48479 -21.13026 -19.05069 -18.95924 -17.74553 -17.25666 -16.63857 -16.34354 -16.22696 -15.88960 -15.25913 -15.06337 -14.71842 -14.65419 -14.42051 -13.61461 -13.36570 -13.05415 -13.03383 -12.88614 -12.62791 -12.22437 -12.18340 -12.16554 -11.77469 -11.70859 -11.50918 -11.05946 -10.78746 -10.44699 -10.08449 -9.81977 -8.29836 -6.36917 0.38096 0.84975 0.93867 1.38585 1.41057 1.52657 1.67163 2.20785 2.24643 2.36914 3.05026 3.29744 3.69742 3.84522 4.05329 4.16660 4.31372 4.37359 4.41785 4.42962 4.73449 4.75422 4.82370 4.93536 5.11207 5.28881 5.37996 5.39343 5.61939 5.69302 6.22083 6.42912 6.69012 6.75406 7.15363 7.27602 8.86925 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.020454 B = 0.004396 C = 0.003655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.587225 B = 6368.423347 C = 7659.113219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.108 3.892 3 N -0.266 5.266 4 C 0.025 3.975 5 C -0.132 4.132 6 Cl -0.023 7.023 7 C -0.030 4.030 8 C 0.588 3.412 9 O -0.560 6.560 10 N -0.705 5.705 11 C 0.145 3.855 12 C -0.012 4.012 13 C -0.538 4.538 14 H 0.032 0.968 15 C 0.007 3.993 16 N -0.949 5.949 17 Si 0.957 3.043 18 H -0.264 1.264 19 H -0.284 1.284 20 H -0.240 1.240 21 N -0.252 5.252 22 H 0.108 0.892 23 H 0.056 0.944 24 H 0.051 0.949 25 H 0.110 0.890 26 H 0.150 0.850 27 H 0.239 0.761 28 H 0.412 0.588 29 H 0.050 0.950 30 H 0.050 0.950 31 H 0.035 0.965 32 H 0.034 0.966 33 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.384 -25.442 18.633 31.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.009 4.009 3 N -0.056 5.056 4 C -0.119 4.119 5 C -0.170 4.170 6 Cl 0.005 6.995 7 C -0.189 4.189 8 C 0.373 3.627 9 O -0.437 6.437 10 N -0.356 5.356 11 C 0.022 3.978 12 C -0.050 4.050 13 C -0.577 4.577 14 H 0.050 0.950 15 C -0.190 4.190 16 N -0.589 5.589 17 Si 0.779 3.221 18 H -0.189 1.189 19 H -0.210 1.210 20 H -0.164 1.164 21 N -0.090 5.090 22 H 0.126 0.874 23 H 0.076 0.924 24 H 0.070 0.930 25 H 0.129 0.871 26 H 0.168 0.832 27 H 0.256 0.744 28 H 0.249 0.751 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.053 0.947 32 H 0.052 0.948 33 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.041 -25.177 18.028 31.228 hybrid contribution 0.028 0.586 -0.166 0.609 sum 4.069 -24.591 17.862 30.665 Atomic orbital electron populations 1.22101 0.93067 1.04819 1.02628 1.22650 0.96701 0.73604 1.07941 1.46211 1.30901 1.11499 1.16956 1.23274 0.97437 0.92272 0.98941 1.21083 1.03865 0.93415 0.98594 1.98352 1.65786 1.58436 1.76899 1.21664 1.04132 0.93588 0.99541 1.17249 0.79256 0.85999 0.80159 1.90794 1.47077 1.36791 1.68997 1.45933 1.46893 1.15201 1.27561 1.21125 0.99465 0.84617 0.92587 1.19645 0.95551 0.96502 0.93292 1.21227 1.28004 0.96991 1.11447 0.95009 1.26029 0.97322 0.99722 0.95963 1.70068 1.40596 1.28676 1.19579 0.85573 0.79319 0.79892 0.77333 1.18926 1.20982 1.16364 1.73531 1.21638 0.97426 1.16398 0.87374 0.92441 0.92996 0.87147 0.83232 0.74434 0.75149 0.93200 0.93193 0.94677 0.94812 0.92278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.19 10.02 71.98 0.72 -0.47 16 2 C 0.11 0.56 7.12 86.38 0.62 1.18 16 3 N -0.27 -4.15 3.42 -347.34 -1.19 -5.34 16 4 C 0.03 0.38 11.44 83.46 0.95 1.33 16 5 C -0.13 -3.34 6.80 22.44 0.15 -3.19 16 6 Cl -0.02 -0.63 28.17 -2.72 -0.08 -0.70 16 7 C -0.03 -0.91 7.13 42.45 0.30 -0.61 16 8 C 0.59 22.31 7.82 86.74 0.68 22.99 16 9 O -0.56 -24.81 15.87 -3.96 -0.06 -24.88 16 10 N -0.70 -26.05 5.55 -466.13 -2.59 -28.64 16 11 C 0.15 6.37 5.61 86.38 0.48 6.85 16 12 C -0.01 -0.57 4.16 29.85 0.12 -0.45 16 13 C -0.54 -31.54 9.66 25.60 0.25 -31.29 16 14 H 0.03 2.07 7.99 -2.91 -0.02 2.05 16 15 C 0.01 0.40 5.47 84.65 0.46 0.87 16 16 N -0.95 -59.97 13.96 21.44 0.30 -59.67 16 17 Si 0.96 43.36 27.47 68.60 1.88 45.24 16 18 H -0.26 -11.44 7.11 99.48 0.71 -10.74 16 19 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 20 H -0.24 -9.86 6.54 99.48 0.65 -9.21 16 21 N -0.25 -6.20 11.36 -48.17 -0.55 -6.75 16 22 H 0.11 0.20 8.14 -2.39 -0.02 0.18 16 23 H 0.06 0.50 8.14 -2.38 -0.02 0.49 16 24 H 0.05 0.65 8.09 -2.39 -0.02 0.63 16 25 H 0.11 0.39 8.14 -2.38 -0.02 0.37 16 26 H 0.15 -0.46 8.05 -2.39 -0.02 -0.48 16 27 H 0.24 1.02 8.06 -2.91 -0.02 1.00 16 28 H 0.41 13.25 8.19 -92.71 -0.76 12.49 16 29 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 30 H 0.05 2.32 8.14 -2.39 -0.02 2.30 16 31 H 0.03 1.56 7.20 -2.39 -0.02 1.55 16 32 H 0.03 1.48 7.57 -2.39 -0.02 1.47 16 33 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 Total: -1.00 -78.95 305.97 2.78 -76.17 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: 0.32 Total: 7.36 kcal Atomic # 6 Polarization: -7.54 SS G_CDS: 4.74 Total: -2.80 kcal Atomic # 7 Polarization: -96.37 SS G_CDS: -4.03 Total: -100.40 kcal Atomic # 8 Polarization: -24.81 SS G_CDS: -0.06 Total: -24.88 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 1.88 Total: 45.24 kcal Atomic # 17 Polarization: -0.63 SS G_CDS: -0.08 Total: -0.70 kcal Total: -78.95 2.78 -76.17 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001128024535.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.970 kcal (2) G-P(sol) polarization free energy of solvation -78.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.174 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds