Wall clock time and date at job start Mon Mar 30 2020 01:15:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46507 * 109.46921 * 104.09548 * 3 2 1 5 5 C 1.36767 * 119.99942 * 88.28232 * 4 3 2 6 6 H 1.08004 * 119.99651 * 166.45470 * 5 4 3 7 7 C 1.39105 * 120.00265 * 346.45423 * 5 4 3 8 8 N 1.31329 * 119.99709 * 349.29236 * 7 5 4 9 9 Si 1.86794 * 120.00101 * 169.29162 * 7 5 4 10 10 H 1.48499 * 109.47215 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47269 * 119.99919 * 9 7 5 12 12 H 1.48495 * 109.47384 * 239.99871 * 9 7 5 13 13 C 1.34774 * 119.99813 * 268.28290 * 4 3 2 14 14 O 1.21615 * 119.99893 * 183.86956 * 13 4 3 15 15 C 1.47648 * 120.00073 * 3.86225 * 13 4 3 16 16 C 1.41637 * 120.38654 * 229.83296 * 15 13 4 17 17 C 1.34781 * 120.11037 * 180.02562 * 16 15 13 18 18 N 1.36095 * 120.83668 * 359.97438 * 17 16 15 19 19 N 1.40253 * 133.71877 * 179.97438 * 18 17 16 20 20 N 1.28971 * 107.02726 * 180.02562 * 19 18 17 21 21 N 1.28544 * 110.85178 * 359.97438 * 20 19 18 22 22 C 1.32643 * 110.17873 * 0.02562 * 21 20 19 23 23 C 1.38603 * 120.38099 * 50.03752 * 15 13 4 24 24 H 4.40643 * 5.51387 * 180.02562 * 4 1 2 25 25 H 1.08997 * 109.47477 * 344.09282 * 3 2 1 26 26 H 1.09003 * 109.47033 * 224.09161 * 3 2 1 27 27 H 0.96997 * 119.99591 * 180.02562 * 8 7 5 28 28 H 1.08002 * 119.94664 * 359.97438 * 16 15 13 29 29 H 1.08001 * 119.58304 * 179.97438 * 17 16 15 30 30 H 1.07997 * 120.52325 * 359.77337 * 23 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1342 0.3373 -1.3397 5 6 3.3281 1.6455 -1.6882 6 1 3.8865 1.8898 -2.5798 7 6 2.8060 2.6615 -0.8943 8 7 1.9559 2.3744 0.0646 9 14 3.3142 4.4342 -1.1921 10 1 4.2750 4.4903 -2.3230 11 1 2.1142 5.2444 -1.5222 12 1 3.9568 4.9772 0.0315 13 6 3.3922 -0.6423 -2.2287 14 8 3.8638 -0.3682 -3.3157 15 6 3.1025 -2.0482 -1.8829 16 6 4.0861 -3.0497 -2.0717 17 6 3.8155 -4.3314 -1.7546 18 7 2.6015 -4.6840 -1.2505 19 7 2.0395 -5.9011 -0.8384 20 7 0.8385 -5.6477 -0.4425 21 7 0.5735 -4.3951 -0.5578 22 6 1.6218 -3.7491 -1.0509 23 6 1.8634 -2.4038 -1.3737 24 1 -1.0500 0.0002 0.0002 25 1 3.0099 -0.9874 0.2816 26 1 3.0091 0.7389 0.7151 27 1 1.5916 3.0829 0.6179 28 1 5.0543 -2.7860 -2.4712 29 1 4.5716 -5.0883 -1.9024 30 1 1.0983 -1.6570 -1.2210 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001128396315.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:29 Heat of formation + Delta-G solvation = 198.699113 kcal Electronic energy + Delta-G solvation = -20067.363751 eV Core-core repulsion = 16869.048493 eV Total energy + Delta-G solvation = -3198.315258 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.081 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.16449 -39.60240 -37.81659 -35.56123 -33.88269 -32.27625 -31.88757 -31.55201 -30.25342 -26.83653 -25.80550 -24.65614 -23.97264 -22.61449 -20.29632 -18.54743 -18.17322 -17.10122 -16.89318 -16.71789 -16.51109 -15.46908 -15.01433 -14.44615 -14.22071 -14.04424 -13.38652 -13.01538 -12.73289 -12.68118 -12.49722 -12.33617 -11.75907 -11.72724 -11.29203 -11.16646 -10.88180 -10.72175 -10.53925 -9.96398 -9.68599 -9.46207 -9.03031 -8.87685 -8.43147 -8.26163 -6.61442 -4.16517 0.37522 0.57100 1.84771 2.26329 2.85240 3.06408 3.10204 3.15198 3.52540 3.58583 3.80899 3.91554 3.94894 4.16936 4.42732 4.69922 4.80911 5.01571 5.07649 5.26508 5.38574 5.48166 5.65961 5.77948 6.01733 6.11877 6.16206 6.45860 6.64093 6.91403 7.23591 7.63714 8.06701 8.50987 8.64461 8.76826 8.95718 9.48543 10.32007 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.030631 B = 0.005911 C = 0.005138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.898657 B = 4735.545026 C = 5448.502391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.111 4.111 3 C 0.225 3.775 4 N -0.411 5.411 5 C -0.304 4.304 6 H 0.114 0.886 7 C 0.031 3.969 8 N -0.854 5.854 9 Si 0.936 3.064 10 H -0.265 1.265 11 H -0.279 1.279 12 H -0.277 1.277 13 C 0.463 3.537 14 O -0.573 6.573 15 C -0.029 4.029 16 C -0.094 4.094 17 C 0.090 3.910 18 N -0.300 5.300 19 N -0.129 5.129 20 N -0.017 5.017 21 N -0.324 5.324 22 C 0.248 3.752 23 C -0.088 4.088 24 H 0.203 0.797 25 H 0.058 0.942 26 H 0.124 0.876 27 H 0.275 0.725 28 H 0.173 0.827 29 H 0.182 0.818 30 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.402 -5.862 1.035 6.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.269 4.269 2 C -0.112 4.112 3 C 0.102 3.898 4 N -0.126 5.126 5 C -0.432 4.432 6 H 0.132 0.868 7 C -0.174 4.174 8 N -0.491 5.491 9 Si 0.762 3.238 10 H -0.189 1.189 11 H -0.204 1.204 12 H -0.203 1.203 13 C 0.252 3.748 14 O -0.459 6.459 15 C -0.041 4.041 16 C -0.117 4.117 17 C -0.037 4.037 18 N -0.080 5.080 19 N -0.113 5.113 20 N -0.010 5.010 21 N -0.186 5.186 22 C -0.004 4.004 23 C -0.112 4.112 24 H 0.220 0.780 25 H 0.076 0.924 26 H 0.142 0.858 27 H 0.087 0.913 28 H 0.190 0.810 29 H 0.199 0.801 30 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 2.723 -6.907 1.208 7.521 hybrid contribution 0.397 1.489 -0.275 1.565 sum 3.119 -5.418 0.933 6.321 Atomic orbital electron populations 1.24364 0.95452 1.06231 1.00844 1.22765 0.94050 0.95155 0.99270 1.18609 0.84835 0.99470 0.86890 1.43736 1.52789 1.06140 1.09952 1.19944 1.32629 0.79401 1.11183 0.86796 1.25486 0.94843 1.01146 0.95971 1.69955 1.25884 1.33935 1.19364 0.85693 0.78774 0.80633 0.78728 1.18891 1.20444 1.20294 1.17403 0.88393 0.83173 0.85809 1.90691 1.50415 1.82168 1.22580 1.20771 0.92730 0.97115 0.93524 1.21224 1.01537 0.89605 0.99364 1.21498 0.85468 0.97938 0.98766 1.48932 1.12168 1.08129 1.38748 1.82671 1.05238 0.99392 1.23954 1.77781 1.06229 1.08391 1.08557 1.75230 1.21565 0.98194 1.23625 1.22773 0.86055 0.93339 0.98240 1.21529 0.99406 0.91154 0.99081 0.78041 0.92357 0.85816 0.91339 0.80970 0.80112 0.80265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -4.80 18.41 29.55 0.54 -4.26 16 2 C -0.11 -2.26 8.46 -37.12 -0.31 -2.58 16 3 C 0.22 4.52 4.76 -6.82 -0.03 4.48 16 4 N -0.41 -9.22 2.58 -119.08 -0.31 -9.52 16 5 C -0.30 -7.40 9.46 -15.03 -0.14 -7.55 16 6 H 0.11 2.91 7.24 -52.48 -0.38 2.53 16 7 C 0.03 0.72 5.19 -17.44 -0.09 0.63 16 8 N -0.85 -19.81 8.44 55.50 0.47 -19.34 16 9 Si 0.94 18.47 29.57 -169.99 -5.03 13.44 16 10 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 11 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 12 H -0.28 -5.37 7.11 56.52 0.40 -4.97 16 13 C 0.46 9.95 7.16 -12.42 -0.09 9.86 16 14 O -0.57 -14.07 16.66 5.26 0.09 -13.98 16 15 C -0.03 -0.50 4.69 -104.62 -0.49 -0.99 16 16 C -0.09 -1.22 9.71 -39.51 -0.38 -1.60 16 17 C 0.09 1.07 11.18 -16.89 -0.19 0.88 16 18 N -0.30 -4.66 3.94 -12.43 -0.05 -4.71 16 19 N -0.13 -2.17 13.98 60.35 0.84 -1.33 16 20 N -0.02 -0.30 13.35 60.35 0.81 0.50 16 21 N -0.32 -6.06 12.27 31.03 0.38 -5.68 16 22 C 0.25 4.31 8.02 -156.34 -1.25 3.06 16 23 C -0.09 -1.52 7.89 -38.61 -0.30 -1.83 16 24 H 0.20 3.21 7.80 -54.09 -0.42 2.78 16 25 H 0.06 1.02 6.39 -51.93 -0.33 0.69 16 26 H 0.12 2.62 6.32 -51.93 -0.33 2.29 16 27 H 0.28 6.12 8.31 -40.82 -0.34 5.79 16 28 H 0.17 1.84 8.06 -52.49 -0.42 1.42 16 29 H 0.18 1.35 8.06 -52.49 -0.42 0.93 16 30 H 0.18 3.34 4.29 -52.49 -0.22 3.12 16 LS Contribution 273.51 15.07 4.12 4.12 Total: -1.00 -28.76 273.51 -3.09 -31.85 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: -1.67 Total: 4.53 kcal Atomic # 6 Polarization: 2.87 SS G_CDS: -2.75 Total: 0.12 kcal Atomic # 7 Polarization: -42.22 SS G_CDS: 2.14 Total: -40.08 kcal Atomic # 8 Polarization: -14.07 SS G_CDS: 0.09 Total: -13.98 kcal Atomic # 14 Polarization: 18.47 SS G_CDS: -5.03 Total: 13.44 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -28.76 -3.09 -31.85 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001128396315.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 230.546 kcal (2) G-P(sol) polarization free energy of solvation -28.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 201.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.847 kcal (6) G-S(sol) free energy of system = (1) + (5) 198.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds