Wall clock time and date at job start Mon Mar 30 2020 01:15:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46507 * 109.46921 * 104.09548 * 3 2 1 5 5 C 1.36767 * 119.99942 * 88.28232 * 4 3 2 6 6 H 1.08004 * 119.99651 * 166.45470 * 5 4 3 7 7 C 1.39105 * 120.00265 * 346.45423 * 5 4 3 8 8 N 1.31329 * 119.99709 * 349.29236 * 7 5 4 9 9 Si 1.86794 * 120.00101 * 169.29162 * 7 5 4 10 10 H 1.48499 * 109.47215 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47269 * 119.99919 * 9 7 5 12 12 H 1.48495 * 109.47384 * 239.99871 * 9 7 5 13 13 C 1.34774 * 119.99813 * 268.28290 * 4 3 2 14 14 O 1.21615 * 119.99893 * 183.86956 * 13 4 3 15 15 C 1.47648 * 120.00073 * 3.86225 * 13 4 3 16 16 C 1.41637 * 120.38654 * 229.83296 * 15 13 4 17 17 C 1.34781 * 120.11037 * 180.02562 * 16 15 13 18 18 N 1.36095 * 120.83668 * 359.97438 * 17 16 15 19 19 N 1.40253 * 133.71877 * 179.97438 * 18 17 16 20 20 N 1.28971 * 107.02726 * 180.02562 * 19 18 17 21 21 N 1.28544 * 110.85178 * 359.97438 * 20 19 18 22 22 C 1.32643 * 110.17873 * 0.02562 * 21 20 19 23 23 C 1.38603 * 120.38099 * 50.03752 * 15 13 4 24 24 H 4.40643 * 5.51387 * 180.02562 * 4 1 2 25 25 H 1.08997 * 109.47477 * 344.09282 * 3 2 1 26 26 H 1.09003 * 109.47033 * 224.09161 * 3 2 1 27 27 H 0.96997 * 119.99591 * 180.02562 * 8 7 5 28 28 H 1.08002 * 119.94664 * 359.97438 * 16 15 13 29 29 H 1.08001 * 119.58304 * 179.97438 * 17 16 15 30 30 H 1.07997 * 120.52325 * 359.77337 * 23 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1342 0.3373 -1.3397 5 6 3.3281 1.6455 -1.6882 6 1 3.8865 1.8898 -2.5798 7 6 2.8060 2.6615 -0.8943 8 7 1.9559 2.3744 0.0646 9 14 3.3142 4.4342 -1.1921 10 1 4.2750 4.4903 -2.3230 11 1 2.1142 5.2444 -1.5222 12 1 3.9568 4.9772 0.0315 13 6 3.3922 -0.6423 -2.2287 14 8 3.8638 -0.3682 -3.3157 15 6 3.1025 -2.0482 -1.8829 16 6 4.0861 -3.0497 -2.0717 17 6 3.8155 -4.3314 -1.7546 18 7 2.6015 -4.6840 -1.2505 19 7 2.0395 -5.9011 -0.8384 20 7 0.8385 -5.6477 -0.4425 21 7 0.5735 -4.3951 -0.5578 22 6 1.6218 -3.7491 -1.0509 23 6 1.8634 -2.4038 -1.3737 24 1 -1.0500 0.0002 0.0002 25 1 3.0099 -0.9874 0.2816 26 1 3.0091 0.7389 0.7151 27 1 1.5916 3.0829 0.6179 28 1 5.0543 -2.7860 -2.4712 29 1 4.5716 -5.0883 -1.9024 30 1 1.0983 -1.6570 -1.2210 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001128396315.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:29 Heat of formation + Delta-G solvation = 180.975888 kcal Electronic energy + Delta-G solvation = -20068.132288 eV Core-core repulsion = 16869.048493 eV Total energy + Delta-G solvation = -3199.083795 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.081 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -44.47619 -41.15476 -39.21185 -37.29303 -35.26662 -33.89771 -33.30705 -33.07556 -31.54963 -28.47904 -27.37828 -25.95031 -25.45887 -23.89061 -21.83965 -19.92860 -19.80551 -18.44227 -18.42173 -18.15068 -17.91650 -17.03922 -16.34144 -16.02319 -15.79947 -15.49274 -14.80975 -14.43191 -14.21387 -14.11546 -14.03109 -13.65982 -13.40639 -13.07189 -12.82798 -12.68657 -12.44208 -12.20977 -12.11857 -11.39171 -11.25311 -11.02442 -10.71194 -10.51830 -9.99447 -9.69634 -8.34863 -6.00609 -0.90642 -0.67603 0.63816 0.98180 1.31280 1.46437 1.58024 1.62029 1.98365 2.09754 2.28649 2.36627 2.48663 2.85524 2.97849 3.11337 3.51238 3.64573 3.75721 3.91686 4.08190 4.18119 4.38466 4.52982 4.55473 4.85500 4.91343 5.01310 5.31067 5.40856 5.42130 5.89485 6.30370 7.00368 7.10012 7.17450 7.23794 7.75899 8.56559 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.030631 B = 0.005911 C = 0.005138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.898657 B = 4735.545026 C = 5448.502391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.139 4.139 3 C 0.231 3.769 4 N -0.423 5.423 5 C -0.341 4.341 6 H 0.091 0.909 7 C 0.005 3.995 8 N -0.866 5.866 9 Si 0.993 3.007 10 H -0.270 1.270 11 H -0.280 1.280 12 H -0.267 1.267 13 C 0.464 3.536 14 O -0.609 6.609 15 C -0.029 4.029 16 C -0.089 4.089 17 C 0.118 3.882 18 N -0.297 5.297 19 N -0.123 5.123 20 N -0.030 5.030 21 N -0.346 5.346 22 C 0.240 3.760 23 C -0.090 4.090 24 H 0.229 0.771 25 H 0.082 0.918 26 H 0.109 0.891 27 H 0.277 0.723 28 H 0.202 0.798 29 H 0.238 0.762 30 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.323 -7.143 1.161 8.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.263 4.263 2 C -0.141 4.141 3 C 0.109 3.891 4 N -0.138 5.138 5 C -0.468 4.468 6 H 0.109 0.891 7 C -0.199 4.199 8 N -0.503 5.503 9 Si 0.817 3.183 10 H -0.195 1.195 11 H -0.206 1.206 12 H -0.192 1.192 13 C 0.254 3.746 14 O -0.497 6.497 15 C -0.041 4.041 16 C -0.113 4.113 17 C -0.008 4.008 18 N -0.077 5.077 19 N -0.107 5.107 20 N -0.022 5.022 21 N -0.208 5.208 22 C -0.012 4.012 23 C -0.114 4.114 24 H 0.246 0.754 25 H 0.099 0.901 26 H 0.127 0.873 27 H 0.088 0.912 28 H 0.219 0.781 29 H 0.254 0.746 30 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 3.629 -8.204 1.363 9.074 hybrid contribution 0.134 1.763 -0.360 1.805 sum 3.763 -6.441 1.003 7.527 Atomic orbital electron populations 1.25103 0.96345 1.05206 0.99687 1.23023 0.94611 0.96137 1.00335 1.18553 0.84957 1.00087 0.85490 1.43848 1.53165 1.05853 1.10914 1.19823 1.34447 0.80961 1.11578 0.89107 1.26086 0.94469 1.03813 0.95579 1.70055 1.25994 1.34669 1.19540 0.84858 0.78086 0.76742 0.78611 1.19478 1.20607 1.19200 1.17954 0.86866 0.84693 0.85087 1.90656 1.51607 1.83376 1.24069 1.20519 0.93837 0.95543 0.94196 1.21495 1.01676 0.88924 0.99181 1.22398 0.84674 0.98580 0.95145 1.49155 1.12889 1.07346 1.38292 1.82599 1.04874 0.99598 1.23611 1.77767 1.06898 1.08357 1.09225 1.75165 1.22608 0.98533 1.24502 1.22566 0.86517 0.93337 0.98796 1.21230 0.99299 0.91085 0.99827 0.75395 0.90056 0.87300 0.91227 0.78066 0.74600 0.81790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -9.31 18.41 74.32 1.37 -7.94 16 2 C -0.14 -5.73 8.46 31.13 0.26 -5.46 16 3 C 0.23 9.39 4.76 84.57 0.40 9.79 16 4 N -0.42 -19.33 2.58 -648.92 -1.67 -21.00 16 5 C -0.34 -17.10 9.46 84.13 0.80 -16.30 16 6 H 0.09 4.86 7.24 -2.91 -0.02 4.84 16 7 C 0.00 0.23 5.19 84.98 0.44 0.67 16 8 N -0.87 -40.51 8.44 21.69 0.18 -40.33 16 9 Si 0.99 38.26 29.57 68.60 2.03 40.29 16 10 H -0.27 -10.55 7.11 99.48 0.71 -9.84 16 11 H -0.28 -10.80 7.11 99.48 0.71 -10.10 16 12 H -0.27 -9.77 7.11 99.48 0.71 -9.07 16 13 C 0.46 20.04 7.16 86.73 0.62 20.66 16 14 O -0.61 -30.31 16.66 -4.08 -0.07 -30.38 16 15 C -0.03 -0.95 4.69 -19.87 -0.09 -1.04 16 16 C -0.09 -2.01 9.71 22.32 0.22 -1.79 16 17 C 0.12 2.23 11.18 83.24 0.93 3.16 16 18 N -0.30 -8.28 3.94 -193.25 -0.76 -9.04 16 19 N -0.12 -3.81 13.98 37.02 0.52 -3.29 16 20 N -0.03 -1.03 13.35 37.02 0.49 -0.54 16 21 N -0.35 -12.57 12.27 -55.74 -0.68 -13.25 16 22 C 0.24 7.94 8.02 134.02 1.07 9.02 16 23 C -0.09 -3.05 7.89 22.90 0.18 -2.87 16 24 H 0.23 6.98 7.80 -4.42 -0.03 6.95 16 25 H 0.08 2.82 6.39 -2.39 -0.02 2.81 16 26 H 0.11 4.71 6.32 -2.39 -0.02 4.70 16 27 H 0.28 12.33 8.31 -92.71 -0.77 11.56 16 28 H 0.20 3.44 8.06 -2.91 -0.02 3.41 16 29 H 0.24 1.88 8.06 -2.91 -0.02 1.85 16 30 H 0.17 6.13 4.29 -2.91 -0.01 6.12 16 Total: -1.00 -63.88 273.51 7.44 -56.43 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: 1.21 Total: 13.24 kcal Atomic # 6 Polarization: 1.67 SS G_CDS: 6.20 Total: 7.88 kcal Atomic # 7 Polarization: -85.53 SS G_CDS: -1.92 Total: -87.45 kcal Atomic # 8 Polarization: -30.31 SS G_CDS: -0.07 Total: -30.38 kcal Atomic # 14 Polarization: 38.26 SS G_CDS: 2.03 Total: 40.29 kcal Total: -63.88 7.44 -56.43 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001128396315.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 237.410 kcal (2) G-P(sol) polarization free energy of solvation -63.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 173.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.434 kcal (6) G-S(sol) free energy of system = (1) + (5) 180.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds