Wall clock time and date at job start Mon Mar 30 2020 00:56:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86799 * 120.00170 * 2 1 4 4 H 1.48500 * 109.47283 * 239.99988 * 3 2 1 5 5 H 1.48505 * 109.46986 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47406 * 119.99838 * 3 2 1 7 7 C 1.38813 * 120.00077 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00220 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00143 * 0.02562 * 7 2 1 10 10 C 1.46493 * 120.00192 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47104 * 179.97438 * 10 9 7 12 12 N 1.46507 * 109.47212 * 180.02562 * 11 10 9 13 13 C 1.34770 * 119.99931 * 180.02562 * 12 11 10 14 14 O 1.21548 * 120.00227 * 359.97438 * 13 12 11 15 15 C 1.47885 * 119.99722 * 179.97438 * 13 12 11 16 16 N 1.32844 * 119.72512 * 0.02562 * 15 13 12 17 17 C 1.31364 * 121.69359 * 179.97438 * 16 15 13 18 18 C 1.39005 * 120.92975 * 359.97438 * 17 16 15 19 19 F 1.35100 * 120.32660 * 180.02562 * 18 17 16 20 20 C 1.38720 * 119.34296 * 0.02562 * 18 17 16 21 21 C 1.38834 * 118.45065 * 359.97438 * 20 18 17 22 22 F 1.35098 * 120.48765 * 179.97438 * 21 20 18 23 23 H 0.97002 * 120.00309 * 0.02562 * 1 2 3 24 24 H 0.97003 * 120.00009 * 359.97438 * 9 7 2 25 25 H 1.09006 * 109.47470 * 60.00132 * 10 9 7 26 26 H 1.09001 * 109.47191 * 299.99987 * 10 9 7 27 27 H 1.09001 * 109.46795 * 60.00228 * 11 10 9 28 28 H 1.08996 * 109.47066 * 299.99592 * 11 10 9 29 29 H 0.97003 * 119.99691 * 359.97438 * 12 11 10 30 30 H 1.07998 * 119.53622 * 180.27942 * 17 16 15 31 31 H 1.08002 * 120.77126 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0580 -3.6567 0.0017 11 6 1.0638 -4.8197 0.0021 12 7 1.7963 -6.0885 0.0038 13 6 1.1224 -7.2556 0.0039 14 8 -0.0931 -7.2556 0.0030 15 6 1.8619 -8.5363 0.0051 16 7 3.1903 -8.5299 0.0066 17 6 3.8858 -9.6443 0.0082 18 6 3.2526 -10.8817 0.0089 19 9 3.9799 -12.0202 0.0111 20 6 1.8664 -10.9360 0.0074 21 6 1.1578 -9.7422 0.0058 22 9 -0.1932 -9.7470 0.0037 23 1 -0.4851 0.8400 -0.0004 24 1 0.3555 -2.3881 0.0005 25 1 2.6840 -3.7141 0.8922 26 1 2.6854 -3.7149 -0.8878 27 1 0.4375 -4.7625 -0.8882 28 1 0.4368 -4.7614 0.8918 29 1 2.7663 -6.0884 0.0041 30 1 4.9648 -9.5984 0.0140 31 1 1.3506 -11.8849 0.0076 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001130318385.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:58 Heat of formation + Delta-G solvation = -71.723130 kcal Electronic energy + Delta-G solvation = -19360.875955 eV Core-core repulsion = 15700.145122 eV Total energy + Delta-G solvation = -3660.730833 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.087 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.71430 -49.40486 -40.81028 -39.08080 -35.75434 -33.96164 -33.00400 -31.67415 -30.98734 -27.84489 -25.31628 -24.38052 -23.40603 -21.53664 -21.02271 -18.79908 -18.66835 -18.19709 -17.16941 -16.83237 -16.41670 -15.94423 -15.87412 -15.30809 -15.28172 -14.89065 -14.52610 -14.06176 -13.90997 -13.75912 -13.28239 -13.17770 -13.01642 -12.83414 -11.47707 -11.11977 -10.84557 -10.79234 -10.76870 -10.46978 -10.19173 -10.05640 -9.74416 -9.51948 -9.00655 -8.85107 -6.99286 -5.78947 -3.09789 -0.18503 0.25946 2.28426 2.80768 3.13987 3.22822 3.43662 3.43788 3.47766 3.49192 3.59106 3.95573 4.14677 4.48665 4.59946 4.84576 5.03572 5.13172 5.49556 5.50345 5.75239 5.83189 5.94946 6.11862 6.41626 6.69137 6.69818 6.87877 7.50793 7.66329 8.10953 8.38613 9.49868 10.04269 10.39125 11.43609 Molecular weight = 271.09amu Principal moments of inertia in cm(-1) A = 0.041005 B = 0.003046 C = 0.002842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.687445 B = 9189.221411 C = 9851.462355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.011 4.011 3 Si 0.911 3.089 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.245 4.245 8 H 0.072 0.928 9 N -0.729 5.729 10 C 0.145 3.855 11 C 0.109 3.891 12 N -0.697 5.697 13 C 0.564 3.436 14 O -0.519 6.519 15 C 0.042 3.958 16 N -0.400 5.400 17 C 0.067 3.933 18 C 0.102 3.898 19 F -0.116 7.116 20 C -0.158 4.158 21 C 0.144 3.856 22 F -0.093 7.093 23 H 0.257 0.743 24 H 0.386 0.614 25 H 0.026 0.974 26 H 0.026 0.974 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.410 0.590 30 H 0.185 0.815 31 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.676 -24.934 0.024 26.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.208 4.208 3 Si 0.741 3.259 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.376 4.376 8 H 0.090 0.910 9 N -0.375 5.375 10 C 0.016 3.984 11 C -0.014 4.014 12 N -0.348 5.348 13 C 0.347 3.653 14 O -0.395 6.395 15 C -0.098 4.098 16 N -0.110 5.110 17 C -0.095 4.095 18 C 0.080 3.920 19 F -0.094 7.094 20 C -0.185 4.185 21 C 0.121 3.879 22 F -0.071 7.071 23 H 0.067 0.933 24 H 0.220 0.780 25 H 0.044 0.956 26 H 0.044 0.956 27 H 0.092 0.908 28 H 0.092 0.908 29 H 0.246 0.754 30 H 0.202 0.798 31 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 7.271 -23.959 0.024 25.038 hybrid contribution 0.149 -0.241 0.001 0.283 sum 7.420 -24.199 0.025 25.311 Atomic orbital electron populations 1.69654 1.05163 1.25984 1.57122 1.24777 0.95560 0.97818 1.02636 0.86218 0.78490 0.83274 0.77875 1.21178 1.21624 1.21173 1.19153 0.91039 0.83833 1.43558 0.91030 1.42174 1.06005 0.99524 1.89760 1.20756 0.93425 0.85512 0.98670 1.21706 0.95572 0.81204 1.02967 1.45738 1.11300 1.05254 1.72487 1.17462 0.86679 0.82738 0.78415 1.90893 1.12317 1.86723 1.49523 1.21633 0.90107 0.93936 1.04097 1.67725 1.05700 1.29840 1.07750 1.23101 1.01924 0.85333 0.99191 1.18765 0.89041 0.83790 1.00437 1.91592 1.76750 1.47932 1.93129 1.21699 0.93156 0.99737 1.03908 1.18319 0.78999 0.92776 0.97852 1.91683 1.26271 1.96953 1.92221 0.93297 0.77981 0.95605 0.95588 0.90809 0.90815 0.75367 0.79826 0.81405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.29 13.06 55.49 0.72 -27.57 16 2 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 3 Si 0.91 22.29 29.55 -169.99 -5.02 17.27 16 4 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.24 -6.84 9.99 -15.06 -0.15 -6.99 16 8 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 9 N -0.73 -18.54 5.60 -59.91 -0.34 -18.87 16 10 C 0.14 2.83 6.37 -4.04 -0.03 2.81 16 11 C 0.11 1.87 5.79 -4.04 -0.02 1.85 16 12 N -0.70 -10.06 5.54 -61.23 -0.34 -10.40 16 13 C 0.56 8.51 7.80 -12.31 -0.10 8.41 16 14 O -0.52 -9.57 15.31 5.32 0.08 -9.49 16 15 C 0.04 0.50 6.75 -82.96 -0.56 -0.06 16 16 N -0.40 -3.92 9.53 -9.70 -0.09 -4.02 16 17 C 0.07 0.46 11.17 -17.47 -0.20 0.27 16 18 C 0.10 0.68 7.35 -39.12 -0.29 0.39 16 19 F -0.12 -0.75 17.28 2.25 0.04 -0.71 16 20 C -0.16 -1.15 10.14 -39.18 -0.40 -1.54 16 21 C 0.14 1.52 7.31 -38.84 -0.28 1.23 16 22 F -0.09 -1.18 15.54 2.25 0.04 -1.15 16 23 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 24 H 0.39 10.36 7.67 -40.82 -0.31 10.04 16 25 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 28 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 29 H 0.41 5.07 7.80 -40.82 -0.32 4.75 16 30 H 0.18 0.69 8.06 -52.49 -0.42 0.26 16 31 H 0.17 0.79 8.06 -52.49 -0.42 0.36 16 LS Contribution 291.22 15.07 4.39 4.39 Total: -1.00 -32.76 291.22 -5.35 -38.11 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -2.71 Total: 6.49 kcal Atomic # 6 Polarization: 8.05 SS G_CDS: -2.12 Total: 5.93 kcal Atomic # 7 Polarization: -60.81 SS G_CDS: -0.04 Total: -60.85 kcal Atomic # 8 Polarization: -9.57 SS G_CDS: 0.08 Total: -9.49 kcal Atomic # 9 Polarization: -1.93 SS G_CDS: 0.07 Total: -1.86 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -32.76 -5.35 -38.11 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130318385.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.610 kcal (2) G-P(sol) polarization free energy of solvation -32.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds