Wall clock time and date at job start Mon Mar 30 2020 00:56:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86799 * 120.00170 * 2 1 4 4 H 1.48500 * 109.47283 * 239.99988 * 3 2 1 5 5 H 1.48505 * 109.46986 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47406 * 119.99838 * 3 2 1 7 7 C 1.38813 * 120.00077 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00220 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00143 * 0.02562 * 7 2 1 10 10 C 1.46493 * 120.00192 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47104 * 179.97438 * 10 9 7 12 12 N 1.46507 * 109.47212 * 180.02562 * 11 10 9 13 13 C 1.34770 * 119.99931 * 180.02562 * 12 11 10 14 14 O 1.21548 * 120.00227 * 359.97438 * 13 12 11 15 15 C 1.47885 * 119.99722 * 179.97438 * 13 12 11 16 16 N 1.32844 * 119.72512 * 0.02562 * 15 13 12 17 17 C 1.31364 * 121.69359 * 179.97438 * 16 15 13 18 18 C 1.39005 * 120.92975 * 359.97438 * 17 16 15 19 19 F 1.35100 * 120.32660 * 180.02562 * 18 17 16 20 20 C 1.38720 * 119.34296 * 0.02562 * 18 17 16 21 21 C 1.38834 * 118.45065 * 359.97438 * 20 18 17 22 22 F 1.35098 * 120.48765 * 179.97438 * 21 20 18 23 23 H 0.97002 * 120.00309 * 0.02562 * 1 2 3 24 24 H 0.97003 * 120.00009 * 359.97438 * 9 7 2 25 25 H 1.09006 * 109.47470 * 60.00132 * 10 9 7 26 26 H 1.09001 * 109.47191 * 299.99987 * 10 9 7 27 27 H 1.09001 * 109.46795 * 60.00228 * 11 10 9 28 28 H 1.08996 * 109.47066 * 299.99592 * 11 10 9 29 29 H 0.97003 * 119.99691 * 359.97438 * 12 11 10 30 30 H 1.07998 * 119.53622 * 180.27942 * 17 16 15 31 31 H 1.08002 * 120.77126 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0580 -3.6567 0.0017 11 6 1.0638 -4.8197 0.0021 12 7 1.7963 -6.0885 0.0038 13 6 1.1224 -7.2556 0.0039 14 8 -0.0931 -7.2556 0.0030 15 6 1.8619 -8.5363 0.0051 16 7 3.1903 -8.5299 0.0066 17 6 3.8858 -9.6443 0.0082 18 6 3.2526 -10.8817 0.0089 19 9 3.9799 -12.0202 0.0111 20 6 1.8664 -10.9360 0.0074 21 6 1.1578 -9.7422 0.0058 22 9 -0.1932 -9.7470 0.0037 23 1 -0.4851 0.8400 -0.0004 24 1 0.3555 -2.3881 0.0005 25 1 2.6840 -3.7141 0.8922 26 1 2.6854 -3.7149 -0.8878 27 1 0.4375 -4.7625 -0.8882 28 1 0.4368 -4.7614 0.8918 29 1 2.7663 -6.0884 0.0041 30 1 4.9648 -9.5984 0.0140 31 1 1.3506 -11.8849 0.0076 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001130318385.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:58 Heat of formation + Delta-G solvation = -96.310633 kcal Electronic energy + Delta-G solvation = -19361.942149 eV Core-core repulsion = 15700.145122 eV Total energy + Delta-G solvation = -3661.797027 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.087 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -50.27956 -50.24949 -41.66518 -40.16266 -37.37004 -35.60131 -33.80960 -33.13023 -32.18813 -29.47378 -26.36508 -25.46826 -24.75907 -23.13400 -22.14203 -19.66154 -19.42645 -19.35810 -18.87000 -17.58044 -17.15982 -17.07626 -16.75957 -16.49426 -16.47621 -16.21856 -15.59455 -15.34259 -15.24476 -15.00056 -14.67001 -14.41058 -14.20928 -13.70651 -13.11266 -13.03983 -12.63466 -12.55787 -12.12140 -11.88607 -11.65643 -11.11217 -11.08394 -10.97612 -10.39808 -10.08971 -9.06442 -7.95995 -5.27637 -0.93845 -0.36605 1.36971 1.49309 1.53314 1.59236 1.75957 2.33280 2.42400 2.57790 2.72438 2.82302 3.36176 3.38157 3.40616 3.79496 3.96738 4.13228 4.19432 4.20628 4.33752 4.56216 4.59717 4.97023 5.11517 5.21223 5.25661 5.49223 6.10908 6.24512 6.41987 6.96296 7.30981 8.02188 8.25683 9.27535 Molecular weight = 271.09amu Principal moments of inertia in cm(-1) A = 0.041005 B = 0.003046 C = 0.002842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.687445 B = 9189.221411 C = 9851.462355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.076 4.076 3 Si 0.980 3.020 4 H -0.275 1.275 5 H -0.297 1.297 6 H -0.275 1.275 7 C -0.250 4.250 8 H 0.083 0.917 9 N -0.747 5.747 10 C 0.149 3.851 11 C 0.125 3.875 12 N -0.688 5.688 13 C 0.562 3.438 14 O -0.562 6.562 15 C 0.020 3.980 16 N -0.411 5.411 17 C 0.080 3.920 18 C 0.120 3.880 19 F -0.107 7.107 20 C -0.143 4.143 21 C 0.128 3.872 22 F -0.113 7.113 23 H 0.253 0.747 24 H 0.375 0.625 25 H 0.038 0.962 26 H 0.039 0.961 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.422 0.578 30 H 0.222 0.778 31 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.388 -26.576 0.028 28.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.268 4.268 3 Si 0.808 3.192 4 H -0.201 1.201 5 H -0.223 1.223 6 H -0.201 1.201 7 C -0.382 4.382 8 H 0.101 0.899 9 N -0.390 5.390 10 C 0.023 3.977 11 C 0.001 3.999 12 N -0.340 5.340 13 C 0.347 3.653 14 O -0.440 6.440 15 C -0.117 4.117 16 N -0.121 5.121 17 C -0.083 4.083 18 C 0.098 3.902 19 F -0.085 7.085 20 C -0.169 4.169 21 C 0.105 3.895 22 F -0.091 7.091 23 H 0.061 0.939 24 H 0.206 0.794 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.260 0.740 30 H 0.238 0.762 31 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 10.044 -25.637 0.028 27.535 hybrid contribution -0.561 0.069 0.000 0.565 sum 9.484 -25.569 0.028 27.271 Atomic orbital electron populations 1.69828 1.06850 1.26403 1.59046 1.25675 0.96432 1.01477 1.03260 0.85119 0.77109 0.78569 0.78379 1.20085 1.22309 1.20075 1.19626 0.91770 0.84834 1.41938 0.89870 1.42402 1.05778 1.01004 1.89829 1.20831 0.93514 0.83975 0.99428 1.21291 0.94894 0.81917 1.01781 1.45539 1.11697 1.04269 1.72456 1.17954 0.86422 0.83807 0.77083 1.90861 1.14266 1.87514 1.51385 1.21089 0.91018 0.92483 1.07145 1.67701 1.04614 1.31280 1.08479 1.23699 1.03306 0.84477 0.96816 1.18720 0.88730 0.83962 0.98824 1.91631 1.76484 1.47565 1.92806 1.21900 0.93418 0.99520 1.02091 1.18499 0.78362 0.93546 0.99115 1.91633 1.27762 1.97073 1.92625 0.93869 0.79373 0.94375 0.94356 0.92107 0.92115 0.73968 0.76210 0.78704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.13 13.06 21.65 0.28 -59.84 16 2 C -0.08 -4.38 5.50 84.86 0.47 -3.91 16 3 Si 0.98 45.79 29.55 68.60 2.03 47.82 16 4 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 5 H -0.30 -14.04 7.11 99.48 0.71 -13.34 16 6 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 7 C -0.25 -13.91 9.99 84.03 0.84 -13.07 16 8 H 0.08 4.33 7.83 -2.91 -0.02 4.31 16 9 N -0.75 -38.26 5.60 -343.45 -1.92 -40.19 16 10 C 0.15 5.79 6.37 86.38 0.55 6.34 16 11 C 0.13 4.40 5.79 86.38 0.50 4.90 16 12 N -0.69 -19.83 5.54 -465.92 -2.58 -22.42 16 13 C 0.56 17.27 7.80 86.80 0.68 17.95 16 14 O -0.56 -21.63 15.31 -3.87 -0.06 -21.69 16 15 C 0.02 0.46 6.75 41.88 0.28 0.74 16 16 N -0.41 -7.19 9.53 -184.60 -1.76 -8.95 16 17 C 0.08 0.82 11.17 84.95 0.95 1.77 16 18 C 0.12 1.17 7.35 22.57 0.17 1.34 16 19 F -0.11 -0.93 17.28 44.97 0.78 -0.16 16 20 C -0.14 -1.69 10.14 22.53 0.23 -1.46 16 21 C 0.13 2.60 7.31 22.75 0.17 2.77 16 22 F -0.11 -2.92 15.54 44.97 0.70 -2.22 16 23 H 0.25 15.15 8.31 -92.71 -0.77 14.38 16 24 H 0.37 20.67 7.67 -92.71 -0.71 19.96 16 25 H 0.04 1.42 8.14 -2.38 -0.02 1.40 16 26 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 28 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 29 H 0.42 10.02 7.80 -92.71 -0.72 9.30 16 30 H 0.22 0.56 8.06 -2.91 -0.02 0.54 16 31 H 0.20 1.18 8.06 -2.91 -0.02 1.16 16 Total: -1.00 -71.81 291.22 2.06 -69.75 By element: Atomic # 1 Polarization: 20.77 SS G_CDS: -0.23 Total: 20.54 kcal Atomic # 6 Polarization: 12.53 SS G_CDS: 4.83 Total: 17.36 kcal Atomic # 7 Polarization: -125.42 SS G_CDS: -5.98 Total: -131.40 kcal Atomic # 8 Polarization: -21.63 SS G_CDS: -0.06 Total: -21.69 kcal Atomic # 9 Polarization: -3.85 SS G_CDS: 1.48 Total: -2.37 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.82 kcal Total: -71.81 2.06 -69.75 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130318385.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.559 kcal (2) G-P(sol) polarization free energy of solvation -71.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds