Wall clock time and date at job start Mon Mar 30 2020 01:27:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.35631 * 125.67616 * 2 1 4 4 C 1.35518 * 108.84805 * 179.83208 * 3 2 1 5 5 Cl 1.73599 * 126.07180 * 180.13160 * 4 3 2 6 6 C 1.39883 * 107.84997 * 0.43118 * 4 3 2 7 7 C 1.37634 * 125.67214 * 180.31487 * 2 1 3 8 8 C 1.46664 * 126.22616 * 359.95575 * 7 2 1 9 9 O 1.21700 * 120.00178 * 5.05278 * 8 7 2 10 10 N 1.34778 * 120.00319 * 185.05514 * 8 7 2 11 11 C 1.46503 * 120.00276 * 185.10337 * 10 8 7 12 12 C 1.53005 * 109.46896 * 179.97438 * 11 10 8 13 13 N 1.46502 * 109.46835 * 179.97438 * 12 11 10 14 14 C 1.36935 * 119.99774 * 179.97438 * 13 12 11 15 15 H 1.07991 * 120.00271 * 0.02562 * 14 13 12 16 16 C 1.38816 * 119.99543 * 180.02562 * 14 13 12 17 17 N 1.31618 * 119.99479 * 180.02562 * 16 14 13 18 18 Si 1.86803 * 120.00333 * 0.02562 * 16 14 13 19 19 H 1.48495 * 109.46796 * 89.99838 * 18 16 14 20 20 H 1.48495 * 109.47052 * 209.99836 * 18 16 14 21 21 H 1.48501 * 109.47005 * 330.00016 * 18 16 14 22 22 H 1.09003 * 109.46538 * 264.16116 * 1 2 3 23 23 H 1.08990 * 109.47415 * 144.15888 * 1 2 3 24 24 H 1.08999 * 109.47067 * 24.15084 * 1 2 3 25 25 H 1.07992 * 125.57345 * 359.96508 * 3 2 1 26 26 H 1.08003 * 126.44936 * 179.69929 * 6 4 3 27 27 H 0.97000 * 119.99785 * 5.09485 * 10 8 7 28 28 H 1.09000 * 109.46768 * 299.99187 * 11 10 8 29 29 H 1.08993 * 109.46864 * 59.99481 * 11 10 8 30 30 H 1.08992 * 109.47032 * 299.99626 * 12 11 10 31 31 H 1.09002 * 109.47017 * 59.99998 * 12 11 10 32 32 H 0.96999 * 120.00090 * 0.02562 * 13 12 11 33 33 H 0.97010 * 119.99599 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2561 1.1018 0.0000 4 6 3.5532 0.7094 0.0038 5 17 4.9378 1.7566 0.0085 6 6 3.5782 -0.6891 -0.0038 7 6 2.2677 -1.1181 -0.0061 8 6 1.8120 -2.5121 -0.0129 9 8 0.6250 -2.7639 -0.1062 10 7 2.7077 -3.5144 0.0843 11 6 2.2656 -4.9061 -0.0346 12 6 3.4703 -5.8381 0.1111 13 7 3.0281 -7.2298 -0.0072 14 6 3.9384 -8.2480 0.0907 15 1 4.9822 -8.0253 0.2555 16 6 3.5195 -9.5667 -0.0220 17 7 4.3944 -10.5454 0.0726 18 14 1.7141 -9.9520 -0.3078 19 1 1.4437 -10.0019 -1.7671 20 1 1.3859 -11.2657 0.3017 21 1 0.8777 -8.8946 0.3148 22 1 -0.3632 -0.1046 1.0224 23 1 -0.3634 -0.8330 -0.6017 24 1 -0.3633 0.9377 -0.4205 25 1 1.9089 2.1244 -0.0005 26 1 4.4583 -1.3152 -0.0078 27 1 3.6452 -3.3144 0.2329 28 1 1.5398 -5.1249 0.7486 29 1 1.8046 -5.0587 -1.0104 30 1 4.1958 -5.6192 -0.6722 31 1 3.9317 -5.6855 1.0868 32 1 2.0907 -7.4298 -0.1556 33 1 4.1017 -11.4669 -0.0065 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001131075569.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:44 Heat of formation + Delta-G solvation = 21.603453 kcal Electronic energy + Delta-G solvation = -17651.349465 eV Core-core repulsion = 14546.462256 eV Total energy + Delta-G solvation = -3104.887209 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.76378 -39.19849 -36.66546 -35.92576 -34.17916 -32.96986 -31.51809 -29.99866 -27.87499 -26.80350 -23.97378 -22.38812 -21.57064 -20.89972 -19.83916 -18.34178 -17.58282 -16.24309 -16.09790 -15.65418 -15.18549 -14.66634 -14.34578 -14.06633 -13.82329 -13.79342 -13.63548 -13.26006 -13.14043 -12.68040 -12.54818 -11.76591 -11.62177 -11.54207 -11.13626 -10.98977 -10.87407 -10.18748 -10.12504 -9.64331 -9.18270 -9.00317 -8.94065 -8.52882 -7.32890 -5.81776 -3.19493 1.12925 1.82347 2.13819 2.49523 3.15945 3.25956 3.36601 3.39826 3.44522 4.43563 4.53445 4.55640 4.57863 4.88324 4.94257 5.20465 5.26657 5.33533 5.41557 5.53873 5.60485 5.63236 5.89989 6.10038 6.29048 6.42535 6.54718 6.56532 6.68174 7.41115 7.91500 8.06637 8.36129 9.13653 9.85809 10.03793 11.36044 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.030544 B = 0.003299 C = 0.002989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.485025 B = 8484.589645 C = 9366.957769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.403 5.403 3 C 0.030 3.970 4 C -0.122 4.122 5 Cl -0.050 7.050 6 C -0.128 4.128 7 C -0.032 4.032 8 C 0.588 3.412 9 O -0.548 6.548 10 N -0.707 5.707 11 C 0.110 3.890 12 C 0.148 3.852 13 N -0.752 5.752 14 C -0.249 4.249 15 H 0.092 0.908 16 C 0.007 3.993 17 N -0.931 5.931 18 Si 0.885 3.115 19 H -0.283 1.283 20 H -0.290 1.290 21 H -0.276 1.276 22 H 0.080 0.920 23 H 0.105 0.895 24 H 0.086 0.914 25 H 0.178 0.822 26 H 0.156 0.844 27 H 0.405 0.595 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.035 0.965 31 H 0.035 0.965 32 H 0.363 0.637 33 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.045 26.984 -0.086 27.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.076 5.076 3 C -0.107 4.107 4 C -0.155 4.155 5 Cl -0.021 7.021 6 C -0.155 4.155 7 C -0.146 4.146 8 C 0.374 3.626 9 O -0.428 6.428 10 N -0.358 5.358 11 C -0.014 4.014 12 C 0.020 3.980 13 N -0.399 5.399 14 C -0.379 4.379 15 H 0.110 0.890 16 C -0.189 4.189 17 N -0.579 5.579 18 Si 0.715 3.285 19 H -0.209 1.209 20 H -0.216 1.216 21 H -0.202 1.202 22 H 0.099 0.901 23 H 0.124 0.876 24 H 0.105 0.895 25 H 0.195 0.805 26 H 0.173 0.827 27 H 0.240 0.760 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.196 0.804 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -5.963 26.690 -0.135 27.348 hybrid contribution -0.620 -0.129 -0.112 0.643 sum -6.582 26.560 -0.247 27.365 Atomic orbital electron populations 1.22349 0.75038 1.05203 1.04724 1.43795 1.07198 1.04519 1.52078 1.21717 0.88967 0.92156 1.07895 1.19893 0.88033 0.91390 1.16197 1.98331 1.40618 1.65514 1.97681 1.21266 0.95382 0.93294 1.05547 1.20072 0.89598 0.88102 1.16860 1.16832 0.85710 0.83168 0.76864 1.90801 1.16065 1.84771 1.51118 1.45547 1.11321 1.06188 1.72767 1.21657 0.98640 0.78583 1.02473 1.20740 0.93430 0.84465 0.99382 1.42519 1.07199 1.00751 1.89400 1.19010 0.91309 0.84931 1.42653 0.89029 1.24676 0.97265 0.95401 1.01544 1.69703 1.32797 0.98868 1.56500 0.86543 0.86259 0.77569 0.78162 1.20914 1.21583 1.20179 0.90119 0.87610 0.89536 0.80504 0.82661 0.76019 0.90999 0.91095 0.94693 0.94761 0.80388 0.92915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.51 10.49 59.85 0.63 1.13 16 2 N -0.40 -3.95 3.16 -120.19 -0.38 -4.33 16 3 C 0.03 0.25 11.35 -16.84 -0.19 0.06 16 4 C -0.12 -1.19 6.66 -39.94 -0.27 -1.45 16 5 Cl -0.05 -0.45 29.30 -51.86 -1.52 -1.97 16 6 C -0.13 -1.32 10.34 -39.09 -0.40 -1.72 16 7 C -0.03 -0.37 6.88 -81.99 -0.56 -0.94 16 8 C 0.59 8.05 7.77 -12.86 -0.10 7.95 16 9 O -0.55 -8.96 14.78 5.19 0.08 -8.89 16 10 N -0.71 -9.07 5.53 -61.62 -0.34 -9.41 16 11 C 0.11 1.70 5.79 -4.04 -0.02 1.68 16 12 C 0.15 2.68 6.37 -4.04 -0.03 2.65 16 13 N -0.75 -17.60 5.41 -59.91 -0.32 -17.92 16 14 C -0.25 -6.99 10.47 -15.06 -0.16 -7.15 16 15 H 0.09 2.72 8.06 -52.49 -0.42 2.30 16 16 C 0.01 0.22 5.50 -17.43 -0.10 0.12 16 17 N -0.93 -29.06 13.97 55.49 0.78 -28.28 16 18 Si 0.88 21.97 27.74 -169.99 -4.71 17.26 16 19 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 20 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 21 H -0.28 -6.46 6.52 56.52 0.37 -6.09 16 22 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 23 H 0.11 1.00 6.54 -51.93 -0.34 0.66 16 24 H 0.09 0.38 8.12 -51.93 -0.42 -0.04 16 25 H 0.18 0.92 8.06 -52.49 -0.42 0.50 16 26 H 0.16 1.31 7.49 -52.48 -0.39 0.92 16 27 H 0.40 4.17 7.42 -40.82 -0.30 3.87 16 28 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 29 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.36 8.33 5.53 -40.82 -0.23 8.11 16 33 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 LS Contribution 302.48 15.07 4.56 4.56 Total: -1.00 -33.58 302.48 -6.88 -40.46 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: -3.81 Total: 6.19 kcal Atomic # 6 Polarization: 3.54 SS G_CDS: -1.20 Total: 2.34 kcal Atomic # 7 Polarization: -59.67 SS G_CDS: -0.27 Total: -59.94 kcal Atomic # 8 Polarization: -8.96 SS G_CDS: 0.08 Total: -8.89 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.71 Total: 17.26 kcal Atomic # 17 Polarization: -0.45 SS G_CDS: -1.52 Total: -1.97 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -33.58 -6.88 -40.46 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131075569.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.059 kcal (2) G-P(sol) polarization free energy of solvation -33.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.455 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds