Wall clock time and date at job start Mon Mar 30 2020 01:01:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38223 * 119.99825 * 2 1 4 4 C 1.38209 * 120.03826 * 179.97438 * 3 2 1 5 5 C 1.38384 * 120.03405 * 0.27870 * 4 3 2 6 6 Cl 1.73599 * 119.99896 * 179.72022 * 5 4 3 7 7 C 1.38289 * 120.00215 * 359.46862 * 5 4 3 8 8 C 1.50698 * 120.02254 * 180.25294 * 7 5 4 9 9 N 1.46901 * 109.47377 * 270.27353 * 8 7 5 10 10 C 1.46903 * 110.99695 * 66.04648 * 9 8 7 11 11 C 1.46894 * 110.99943 * 189.99779 * 9 8 7 12 12 C 1.50703 * 109.46996 * 170.00100 * 11 9 8 13 13 H 1.07994 * 120.00127 * 359.97438 * 12 11 9 14 14 C 1.37882 * 120.00011 * 180.02562 * 12 11 9 15 15 N 1.31522 * 119.99982 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 120.00071 * 180.02562 * 14 12 11 17 17 H 1.48494 * 109.47333 * 89.99698 * 16 14 12 18 18 H 1.48500 * 109.46905 * 209.99814 * 16 14 12 19 19 H 1.48504 * 109.47097 * 329.99686 * 16 14 12 20 20 C 1.38441 * 120.00125 * 180.02562 * 2 1 3 21 21 F 1.35103 * 120.01679 * 0.02562 * 20 2 1 22 22 H 1.09000 * 109.46772 * 89.99917 * 1 2 3 23 23 H 1.08994 * 109.47588 * 209.99831 * 1 2 3 24 24 H 1.09000 * 109.47421 * 330.00429 * 1 2 3 25 25 H 1.08007 * 119.98402 * 0.02562 * 3 2 1 26 26 H 1.08002 * 119.97964 * 179.97438 * 4 3 2 27 27 H 1.08994 * 109.46925 * 30.27638 * 8 7 5 28 28 H 1.09004 * 109.47255 * 150.27068 * 8 7 5 29 29 H 1.08996 * 109.47021 * 59.99973 * 10 9 8 30 30 H 1.09000 * 109.46541 * 179.97438 * 10 9 8 31 31 H 1.09003 * 109.47161 * 299.99618 * 10 9 8 32 32 H 1.09001 * 109.47721 * 290.00225 * 11 9 8 33 33 H 1.09001 * 109.47075 * 50.00168 * 11 9 8 34 34 H 0.96999 * 119.99959 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1971 0.0000 4 6 3.5802 1.1980 0.0005 5 6 4.2737 0.0005 -0.0048 6 17 6.0096 0.0028 -0.0114 7 6 3.5838 -1.1980 0.0005 8 6 4.3386 -2.5024 0.0005 9 7 4.5843 -2.9260 -1.3845 10 6 5.4943 -1.9957 -2.0659 11 6 5.1039 -4.2993 -1.4306 12 6 5.1117 -4.7857 -2.8569 13 1 4.7651 -4.1395 -3.6497 14 6 5.5606 -6.0561 -3.1496 15 7 5.9823 -6.8433 -2.1840 16 14 5.5710 -6.6588 -4.9176 17 1 6.8729 -6.3223 -5.5477 18 1 5.3761 -8.1308 -4.9400 19 1 4.4723 -6.0025 -5.6708 20 6 2.1993 -1.1989 -0.0005 21 9 1.5241 -2.3692 -0.0016 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3634 -0.8899 0.5138 24 1 -0.3634 0.8900 0.5138 25 1 1.6578 2.1323 0.0004 26 1 4.1192 2.1339 0.0001 27 1 5.2906 -2.3712 0.5147 28 1 3.7501 -3.2627 0.5141 29 1 6.4462 -1.9648 -1.5357 30 1 5.6595 -2.3332 -3.0891 31 1 5.0528 -0.9992 -2.0784 32 1 6.1194 -4.3171 -1.0350 33 1 4.4681 -4.9487 -0.8287 34 1 6.2984 -7.7369 -2.3900 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001138030978.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:37 Heat of formation + Delta-G solvation = -45.114853 kcal Electronic energy + Delta-G solvation = -18658.856309 eV Core-core repulsion = 15531.156016 eV Total energy + Delta-G solvation = -3127.700293 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.92814 -40.56937 -38.24350 -37.50643 -34.91425 -33.64720 -32.21053 -29.32396 -28.23741 -27.80132 -25.82915 -23.34387 -22.65538 -21.62163 -18.70948 -18.51610 -17.98285 -17.11675 -16.70141 -16.43965 -16.08272 -15.71479 -15.54007 -15.00532 -14.58533 -14.33023 -14.14312 -13.89785 -13.73540 -13.66118 -13.23198 -12.89120 -12.78391 -12.69744 -12.45643 -12.40273 -12.23202 -12.04739 -11.85193 -11.65875 -11.32233 -10.64439 -9.85110 -9.53498 -9.05812 -8.22661 -6.33310 -0.04498 0.06324 1.03891 1.39231 1.41316 1.53096 2.34537 2.41429 3.09533 3.25781 3.35243 3.54579 3.72196 3.85167 4.14646 4.25794 4.39835 4.50877 4.59085 4.63904 4.72692 4.79430 4.99419 4.99862 5.03581 5.10737 5.13783 5.19721 5.23007 5.29699 5.60683 5.77329 5.98942 6.24625 6.51458 6.81388 7.36052 8.88737 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.021907 B = 0.005493 C = 0.004790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.845324 B = 5096.386704 C = 5843.694422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.115 4.115 3 C -0.072 4.072 4 C -0.109 4.109 5 C -0.025 4.025 6 Cl -0.063 7.063 7 C -0.112 4.112 8 C 0.090 3.910 9 N -0.539 5.539 10 C 0.046 3.954 11 C 0.210 3.790 12 C -0.524 4.524 13 H 0.062 0.938 14 C 0.002 3.998 15 N -0.935 5.935 16 Si 0.972 3.028 17 H -0.270 1.270 18 H -0.280 1.280 19 H -0.266 1.266 20 C 0.098 3.902 21 F -0.143 7.143 22 H 0.082 0.918 23 H 0.060 0.940 24 H 0.105 0.895 25 H 0.185 0.815 26 H 0.169 0.831 27 H 0.045 0.955 28 H 0.065 0.935 29 H 0.018 0.982 30 H 0.054 0.946 31 H 0.069 0.931 32 H -0.035 1.035 33 H 0.001 0.999 34 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.029 20.052 5.586 22.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.116 4.116 3 C -0.090 4.090 4 C -0.127 4.127 5 C -0.052 4.052 6 Cl -0.034 7.034 7 C -0.114 4.114 8 C -0.038 4.038 9 N -0.263 5.263 10 C -0.103 4.103 11 C 0.084 3.916 12 C -0.562 4.562 13 H 0.080 0.920 14 C -0.196 4.196 15 N -0.575 5.575 16 Si 0.796 3.204 17 H -0.196 1.196 18 H -0.205 1.205 19 H -0.190 1.190 20 C 0.078 3.922 21 F -0.122 7.122 22 H 0.101 0.899 23 H 0.079 0.921 24 H 0.124 0.876 25 H 0.203 0.797 26 H 0.187 0.813 27 H 0.063 0.937 28 H 0.083 0.917 29 H 0.037 0.963 30 H 0.073 0.927 31 H 0.088 0.912 32 H -0.017 1.017 33 H 0.019 0.981 34 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -8.272 19.818 5.374 22.138 hybrid contribution 1.256 -1.459 -0.152 1.931 sum -7.016 18.359 5.222 20.336 Atomic orbital electron populations 1.20819 0.87849 1.04456 1.03762 1.20408 0.98811 0.91024 1.01358 1.21311 0.92725 0.98121 0.96820 1.21437 0.94837 0.96633 0.99799 1.20726 0.84931 0.94197 1.05330 1.98374 1.09644 1.98681 1.96654 1.19647 0.92771 0.95096 1.03871 1.20884 0.98206 0.93376 0.91293 1.62098 1.47585 1.03453 1.13195 1.22367 0.93465 0.95567 0.98856 1.19387 0.91150 0.84345 0.96762 1.21416 1.42066 0.99452 0.93291 0.91985 1.25940 0.94692 0.96687 1.02297 1.70094 1.44167 1.09041 1.34186 0.85339 0.78849 0.77321 0.78851 1.19573 1.20539 1.19004 1.17519 0.88656 0.81968 1.04070 1.91467 1.79815 1.47068 1.93822 0.89938 0.92065 0.87644 0.79738 0.81330 0.93699 0.91688 0.96322 0.92738 0.91205 1.01711 0.98074 0.92591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.78 9.83 71.24 0.70 -1.08 16 2 C -0.11 -2.50 5.89 -19.82 -0.12 -2.62 16 3 C -0.07 -1.14 9.70 22.26 0.22 -0.93 16 4 C -0.11 -2.04 9.83 22.30 0.22 -1.82 16 5 C -0.02 -0.67 5.22 22.32 0.12 -0.55 16 6 Cl -0.06 -1.74 23.97 -2.72 -0.07 -1.80 16 7 C -0.11 -3.71 4.90 -19.80 -0.10 -3.81 16 8 C 0.09 3.67 4.72 85.56 0.40 4.08 16 9 N -0.54 -25.54 4.74 -931.66 -4.42 -29.96 16 10 C 0.05 1.92 7.81 127.69 1.00 2.92 16 11 C 0.21 11.91 4.72 85.56 0.40 12.31 16 12 C -0.52 -31.10 8.46 25.60 0.22 -30.88 16 13 H 0.06 3.62 7.12 -2.91 -0.02 3.60 16 14 C 0.00 0.11 5.46 84.65 0.46 0.57 16 15 N -0.93 -57.91 13.29 21.45 0.28 -57.62 16 16 Si 0.97 45.56 29.54 68.60 2.03 47.58 16 17 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 18 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 19 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 20 C 0.10 3.04 7.18 22.37 0.16 3.21 16 21 F -0.14 -5.17 15.69 44.97 0.71 -4.46 16 22 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 23 H 0.06 1.12 7.64 -2.39 -0.02 1.10 16 24 H 0.10 0.96 8.09 -2.39 -0.02 0.94 16 25 H 0.19 1.27 8.06 -2.91 -0.02 1.24 16 26 H 0.17 2.10 8.06 -2.91 -0.02 2.08 16 27 H 0.04 1.80 6.89 -2.39 -0.02 1.78 16 28 H 0.06 2.79 7.43 -2.38 -0.02 2.77 16 29 H 0.02 0.77 7.07 -2.39 -0.02 0.75 16 30 H 0.05 2.45 6.76 -2.39 -0.02 2.44 16 31 H 0.07 2.57 5.60 -2.39 -0.01 2.56 16 32 H -0.03 -2.12 8.12 -2.39 -0.02 -2.14 16 33 H 0.00 0.07 7.93 -2.39 -0.02 0.05 16 34 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 Total: -1.00 -70.03 297.49 3.32 -66.71 By element: Atomic # 1 Polarization: -2.94 SS G_CDS: 1.11 Total: -1.83 kcal Atomic # 6 Polarization: -22.29 SS G_CDS: 3.68 Total: -18.61 kcal Atomic # 7 Polarization: -83.45 SS G_CDS: -4.14 Total: -87.58 kcal Atomic # 9 Polarization: -5.17 SS G_CDS: 0.71 Total: -4.46 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.58 kcal Atomic # 17 Polarization: -1.74 SS G_CDS: -0.07 Total: -1.80 kcal Total: -70.03 3.32 -66.71 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001138030978.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.591 kcal (2) G-P(sol) polarization free energy of solvation -70.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds