Wall clock time and date at job start Mon Mar 30 2020 01:26:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46500 * 109.47079 * 2 1 4 4 C 1.46503 * 119.99513 * 277.00714 * 3 2 1 5 5 C 1.50703 * 109.46993 * 269.99953 * 4 3 2 6 6 H 1.08006 * 120.00071 * 0.02562 * 5 4 3 7 7 C 1.37875 * 120.00197 * 180.02562 * 5 4 3 8 8 N 1.31511 * 119.99720 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 120.00270 * 180.02562 * 7 5 4 10 10 H 1.48509 * 109.47096 * 59.99940 * 9 7 5 11 11 H 1.48496 * 109.47438 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47402 * 300.00358 * 9 7 5 13 13 C 1.34776 * 120.00199 * 97.00747 * 3 2 1 14 14 O 1.21606 * 119.99714 * 186.91300 * 13 3 2 15 15 C 1.47383 * 119.99814 * 6.92007 * 13 3 2 16 16 C 1.38069 * 126.42501 * 331.89372 * 15 13 3 17 17 N 1.34232 * 107.44151 * 180.02562 * 16 15 13 18 18 C 1.46501 * 125.74178 * 180.02562 * 17 16 15 19 19 N 1.39935 * 108.52117 * 359.97438 * 17 16 15 20 20 C 1.30528 * 108.89224 * 359.71723 * 19 17 16 21 21 Cl 1.73612 * 126.00516 * 180.28386 * 20 19 17 22 22 H 1.09003 * 109.47041 * 300.00341 * 1 2 3 23 23 H 1.08998 * 109.46983 * 60.00183 * 1 2 3 24 24 H 1.08993 * 109.47398 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.46639 * 239.99768 * 2 1 3 26 26 H 1.09007 * 109.46796 * 119.99837 * 2 1 3 27 27 H 1.08998 * 109.47473 * 29.99998 * 4 3 2 28 28 H 1.08995 * 109.46713 * 150.00390 * 4 3 2 29 29 H 0.97008 * 120.00001 * 179.97438 * 8 7 5 30 30 H 1.07997 * 126.28021 * 359.97438 * 16 15 13 31 31 H 1.08998 * 109.46957 * 89.99465 * 18 17 16 32 32 H 1.08996 * 109.46784 * 209.99706 * 18 17 16 33 33 H 1.08998 * 109.46478 * 329.99602 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1166 2.1233 -1.2593 5 6 3.4798 1.9077 -1.8645 6 1 4.2008 1.2803 -1.3615 7 6 3.8067 2.5114 -3.0601 8 7 2.9286 3.2750 -3.6728 9 14 5.4962 2.2436 -3.8106 10 1 5.6975 0.7958 -4.0728 11 1 5.5963 2.9969 -5.0864 12 1 6.5383 2.7255 -2.8687 13 6 2.3773 1.9691 1.1585 14 8 2.6622 3.1512 1.1776 15 6 2.4245 1.1794 2.4019 16 6 1.6668 0.0624 2.6930 17 7 2.0152 -0.3511 3.9216 18 6 1.4568 -1.5082 4.6255 19 7 3.0024 0.5083 4.4165 20 6 3.2587 1.4196 3.5179 21 17 4.4169 2.7042 3.6684 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8901 27 1 1.3520 1.7688 -1.9506 28 1 1.9683 3.1859 -1.0673 29 1 3.1587 3.7001 -4.5139 30 1 0.9286 -0.3942 2.0504 31 1 2.0462 -2.3948 4.3917 32 1 1.4831 -1.3272 5.7000 33 1 0.4256 -1.6633 4.3083 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001142043985.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:34 Heat of formation + Delta-G solvation = 30.858769 kcal Electronic energy + Delta-G solvation = -18859.421384 eV Core-core repulsion = 15754.935516 eV Total energy + Delta-G solvation = -3104.485868 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.65007 -40.18351 -37.86338 -36.96339 -34.95549 -34.19939 -32.26374 -31.24698 -29.11853 -27.78108 -25.25754 -24.39246 -22.83026 -22.31212 -20.47929 -18.60398 -18.14375 -17.66880 -16.98238 -16.80212 -16.20599 -15.96572 -15.69059 -15.35822 -14.55858 -14.32692 -13.99496 -13.86160 -13.63313 -13.43156 -13.21929 -13.05541 -12.69587 -12.62670 -12.60653 -12.45425 -12.14684 -11.95556 -11.75486 -11.68788 -10.70805 -10.60656 -10.42789 -9.82640 -9.35474 -8.18791 -6.33145 0.38354 0.40598 0.80243 1.37654 1.42349 1.49292 1.72662 2.19289 2.43016 2.56026 3.10573 3.36626 3.69605 3.96761 4.11330 4.19676 4.39639 4.44338 4.48953 4.62384 4.75396 4.76548 4.96853 5.02179 5.10936 5.29888 5.45973 5.61837 5.73340 5.90784 6.11384 6.15714 6.74409 6.83315 7.31772 7.52785 8.87725 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.019965 B = 0.006165 C = 0.005246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.141426 B = 4540.903075 C = 5336.256945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.078 3.922 3 N -0.596 5.596 4 C 0.265 3.735 5 C -0.544 4.544 6 H 0.051 0.949 7 C 0.011 3.989 8 N -0.926 5.926 9 Si 0.963 3.037 10 H -0.259 1.259 11 H -0.277 1.277 12 H -0.281 1.281 13 C 0.574 3.426 14 O -0.586 6.586 15 C -0.297 4.297 16 C 0.120 3.880 17 N -0.337 5.337 18 C 0.081 3.919 19 N -0.300 5.300 20 C 0.148 3.852 21 Cl 0.009 6.991 22 H 0.063 0.937 23 H 0.044 0.956 24 H 0.111 0.889 25 H 0.074 0.926 26 H 0.106 0.894 27 H 0.029 0.971 28 H -0.001 1.001 29 H 0.267 0.733 30 H 0.242 0.758 31 H 0.104 0.896 32 H 0.102 0.898 33 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.686 -15.378 14.823 22.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.044 4.044 3 N -0.327 5.327 4 C 0.144 3.856 5 C -0.582 4.582 6 H 0.069 0.931 7 C -0.188 4.188 8 N -0.566 5.566 9 Si 0.787 3.213 10 H -0.184 1.184 11 H -0.202 1.202 12 H -0.207 1.207 13 C 0.362 3.638 14 O -0.467 6.467 15 C -0.312 4.312 16 C -0.031 4.031 17 N -0.118 5.118 18 C -0.057 4.057 19 N -0.126 5.126 20 C -0.043 4.043 21 Cl 0.037 6.963 22 H 0.082 0.918 23 H 0.063 0.937 24 H 0.129 0.871 25 H 0.092 0.908 26 H 0.123 0.877 27 H 0.047 0.953 28 H 0.017 0.983 29 H 0.076 0.924 30 H 0.258 0.742 31 H 0.122 0.878 32 H 0.120 0.880 33 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -6.253 -15.133 15.918 22.836 hybrid contribution 0.993 1.065 -1.466 2.067 sum -5.260 -14.068 14.452 20.843 Atomic orbital electron populations 1.22274 0.93770 1.04428 1.02348 1.22275 0.95866 0.81850 1.04371 1.48021 1.63130 1.15032 1.06508 1.18708 0.95851 0.91049 0.80008 1.21691 1.00222 1.30133 1.06168 0.93120 1.25788 1.01212 0.94467 0.97337 1.70039 1.36617 1.32200 1.17752 0.85542 0.79275 0.79007 0.77440 1.18390 1.20231 1.20662 1.17640 0.76932 0.86129 0.83067 1.90719 1.51648 1.17575 1.86722 1.20221 1.08828 1.04373 0.97811 1.24175 0.98759 0.92661 0.87547 1.48734 1.27768 1.23008 1.12255 1.22689 1.01249 0.82612 0.99101 1.77090 1.09734 1.04623 1.21203 1.22694 0.95249 0.93276 0.93101 1.98401 1.55343 1.44752 1.97775 0.91809 0.93690 0.87084 0.90759 0.87664 0.95349 0.98284 0.92428 0.74197 0.87776 0.87973 0.84740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.60 9.20 71.98 0.66 -2.94 16 2 C 0.08 2.26 5.64 86.38 0.49 2.75 16 3 N -0.60 -25.86 2.46 -830.08 -2.04 -27.90 16 4 C 0.26 14.46 5.23 85.63 0.45 14.91 16 5 C -0.54 -31.84 9.39 25.60 0.24 -31.60 16 6 H 0.05 2.96 7.81 -2.91 -0.02 2.94 16 7 C 0.01 0.65 5.46 84.65 0.46 1.11 16 8 N -0.93 -56.47 13.29 21.45 0.28 -56.18 16 9 Si 0.96 45.59 29.54 68.60 2.03 47.62 16 10 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 11 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 12 H -0.28 -13.45 7.11 99.48 0.71 -12.75 16 13 C 0.57 26.09 7.58 86.65 0.66 26.75 16 14 O -0.59 -32.50 15.79 -4.05 -0.06 -32.56 16 15 C -0.30 -10.43 5.73 -20.13 -0.12 -10.55 16 16 C 0.12 2.68 9.06 84.29 0.76 3.45 16 17 N -0.34 -6.72 3.98 -367.79 -1.46 -8.18 16 18 C 0.08 0.52 11.44 127.77 1.46 1.98 16 19 N -0.30 -8.84 12.50 -48.94 -0.61 -9.45 16 20 C 0.15 5.27 7.87 85.66 0.67 5.94 16 21 Cl 0.01 0.35 28.45 -2.72 -0.08 0.27 16 22 H 0.06 1.23 7.36 -2.39 -0.02 1.21 16 23 H 0.04 1.20 8.05 -2.39 -0.02 1.18 16 24 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 25 H 0.07 2.27 8.12 -2.39 -0.02 2.25 16 26 H 0.11 2.36 4.05 -2.38 -0.01 2.35 16 27 H 0.03 1.55 7.98 -2.39 -0.02 1.53 16 28 H 0.00 -0.06 7.34 -2.39 -0.02 -0.08 16 29 H 0.27 15.28 8.31 -92.70 -0.77 14.51 16 30 H 0.24 3.31 4.12 -2.91 -0.01 3.30 16 31 H 0.10 0.33 8.14 -2.39 -0.02 0.31 16 32 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.13 -0.11 8.14 -2.39 -0.02 -0.13 16 Total: -1.00 -83.71 299.62 4.93 -78.79 By element: Atomic # 1 Polarization: -5.34 SS G_CDS: 1.14 Total: -4.20 kcal Atomic # 6 Polarization: 6.06 SS G_CDS: 5.74 Total: 11.80 kcal Atomic # 7 Polarization: -97.89 SS G_CDS: -3.83 Total: -101.72 kcal Atomic # 8 Polarization: -32.50 SS G_CDS: -0.06 Total: -32.56 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.62 kcal Atomic # 17 Polarization: 0.35 SS G_CDS: -0.08 Total: 0.27 kcal Total: -83.71 4.93 -78.79 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001142043985.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.644 kcal (2) G-P(sol) polarization free energy of solvation -83.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.786 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds