Wall clock time and date at job start Mon Mar 30 2020 01:34:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 120.00290 * 2 1 4 4 H 1.48492 * 109.47299 * 240.00291 * 3 2 1 5 5 H 1.48507 * 109.46729 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47097 * 120.00009 * 3 2 1 7 7 C 1.37879 * 119.99480 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99844 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00389 * 359.97438 * 7 2 1 10 10 C 1.50698 * 109.47072 * 179.97438 * 9 7 2 11 11 O 1.21295 * 120.00062 * 0.02562 * 10 9 7 12 12 N 1.34776 * 119.99767 * 179.97438 * 10 9 7 13 13 C 1.39600 * 119.99651 * 174.48501 * 12 10 9 14 14 C 1.37844 * 120.29380 * 335.12371 * 13 12 10 15 15 C 1.39158 * 120.75797 * 179.67691 * 14 13 12 16 16 C 1.36168 * 121.07473 * 0.62860 * 15 14 13 17 17 C 1.40550 * 119.95026 * 359.68140 * 16 15 14 18 18 C 1.40497 * 121.15284 * 180.02562 * 17 16 15 19 19 C 1.36578 * 119.63234 * 179.97438 * 18 17 16 20 20 O 1.35878 * 119.57260 * 179.97438 * 19 18 17 21 21 C 1.39821 * 120.85372 * 359.97438 * 19 18 17 22 22 C 1.36046 * 120.90367 * 0.02562 * 21 19 18 23 23 C 1.40428 * 119.74816 * 359.97438 * 22 21 19 24 24 H 0.96998 * 119.99778 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.46530 * 60.00060 * 9 7 2 26 26 H 1.09001 * 109.46978 * 300.00565 * 9 7 2 27 27 H 0.96995 * 119.99992 * 354.49102 * 12 10 9 28 28 H 1.08001 * 119.62064 * 0.02562 * 14 13 12 29 29 H 1.07999 * 119.46601 * 180.31363 * 15 14 13 30 30 H 1.07996 * 120.02575 * 179.69987 * 16 15 14 31 31 H 1.08004 * 120.18285 * 359.97438 * 18 17 16 32 32 H 0.96703 * 114.00186 * 90.00369 * 20 19 18 33 33 H 1.07998 * 119.55419 * 180.02562 * 21 19 18 34 34 H 1.07999 * 120.12792 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2302 -3.6447 -0.0018 11 8 3.4227 -3.4231 -0.0022 12 7 1.7809 -4.9153 -0.0015 13 6 2.6826 -5.9745 -0.1189 14 6 3.9042 -5.7834 -0.7283 15 6 4.8131 -6.8308 -0.8446 16 6 4.5177 -8.0734 -0.3725 17 6 3.2803 -8.3117 0.2499 18 6 2.9495 -9.5837 0.7465 19 6 1.7384 -9.7804 1.3463 20 8 1.4195 -11.0112 1.8257 21 6 0.8224 -8.7317 1.4735 22 6 1.1133 -7.4889 1.0028 23 6 2.3496 -7.2512 0.3805 24 1 -0.4850 0.8400 0.0004 25 1 0.6240 -2.5567 -0.8903 26 1 0.6245 -2.5571 0.8896 27 1 0.8310 -5.0938 0.0802 28 1 4.1611 -4.8083 -1.1150 29 1 5.7663 -6.6565 -1.3214 30 1 5.2338 -8.8751 -0.4761 31 1 3.6491 -10.4013 0.6544 32 1 1.6796 -11.1544 2.7460 33 1 -0.1292 -8.9107 1.9519 34 1 0.3963 -6.6880 1.1074 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143201158.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:17 Heat of formation + Delta-G solvation = -37.694218 kcal Electronic energy + Delta-G solvation = -19400.390566 eV Core-core repulsion = 16263.072116 eV Total energy + Delta-G solvation = -3137.318450 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.100 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.80196 -39.25512 -37.84459 -35.22121 -34.65804 -33.05895 -31.43932 -29.77867 -29.21500 -27.92583 -24.12358 -23.40968 -22.99523 -21.59287 -19.85736 -18.87464 -17.61600 -17.12565 -16.38796 -16.27883 -15.62781 -15.41106 -14.82311 -14.53755 -14.19308 -14.05318 -13.81376 -13.34717 -13.21074 -12.86155 -12.40263 -12.19414 -11.63434 -11.48026 -11.41648 -11.06967 -10.88291 -10.73364 -10.61160 -10.38626 -10.04893 -9.41221 -9.13986 -8.80581 -8.51724 -8.47353 -7.31826 -6.14874 -4.15688 0.52955 0.96986 2.01616 2.90684 3.32462 3.35091 3.38649 3.43425 3.54316 3.98579 4.21476 4.41247 4.61889 4.81248 4.95286 5.11618 5.23682 5.24031 5.29806 5.47010 5.59107 5.83784 5.92731 6.01582 6.10419 6.23474 6.33737 6.54582 6.57573 6.69814 6.77773 7.01183 7.15528 7.24080 7.47619 7.76302 7.88178 8.19854 8.87301 8.94688 9.49863 10.97299 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.033365 B = 0.003916 C = 0.003556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.990927 B = 7148.568934 C = 7871.026139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.057 3.943 3 Si 0.904 3.096 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.514 4.514 8 H 0.076 0.924 9 C 0.007 3.993 10 C 0.513 3.487 11 O -0.516 6.516 12 N -0.682 5.682 13 C 0.181 3.819 14 C -0.151 4.151 15 C -0.075 4.075 16 C -0.152 4.152 17 C -0.016 4.016 18 C -0.139 4.139 19 C 0.107 3.893 20 O -0.502 6.502 21 C -0.150 4.150 22 C -0.080 4.080 23 C -0.085 4.085 24 H 0.264 0.736 25 H 0.054 0.946 26 H 0.052 0.948 27 H 0.407 0.593 28 H 0.151 0.849 29 H 0.124 0.876 30 H 0.123 0.877 31 H 0.131 0.869 32 H 0.388 0.612 33 H 0.128 0.872 34 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.761 -18.831 2.113 19.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.144 4.144 3 Si 0.732 3.268 4 H -0.200 1.200 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.552 4.552 8 H 0.094 0.906 9 C -0.032 4.032 10 C 0.305 3.695 11 O -0.389 6.389 12 N -0.326 5.326 13 C 0.084 3.916 14 C -0.172 4.172 15 C -0.094 4.094 16 C -0.171 4.171 17 C -0.016 4.016 18 C -0.157 4.157 19 C 0.063 3.937 20 O -0.312 6.312 21 C -0.169 4.169 22 C -0.098 4.098 23 C -0.087 4.087 24 H 0.073 0.927 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.243 0.757 28 H 0.169 0.831 29 H 0.142 0.858 30 H 0.141 0.859 31 H 0.149 0.851 32 H 0.244 0.756 33 H 0.146 0.854 34 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 3.180 -18.495 1.544 18.830 hybrid contribution -0.006 0.770 0.591 0.971 sum 3.174 -17.726 2.135 18.134 Atomic orbital electron populations 1.69941 1.06070 1.27256 1.50568 1.25002 0.94931 0.99566 0.94935 0.86447 0.79376 0.82077 0.78933 1.20034 1.21286 1.20057 1.21080 0.94237 0.88904 1.51005 0.90592 1.19294 0.93988 0.90022 0.99917 1.22393 0.91548 0.82802 0.72745 1.90515 1.17817 1.84033 1.46574 1.44146 1.09934 1.05507 1.73025 1.17883 0.91960 0.86713 0.95093 1.21460 0.93647 1.01360 1.00748 1.20767 0.98928 0.92226 0.97454 1.20811 0.96164 0.97695 1.02436 1.17656 0.94027 0.92077 0.97866 1.21188 0.96464 0.96462 1.01605 1.18109 0.92694 0.84361 0.98524 1.84818 1.83618 1.30143 1.32653 1.20999 1.00390 0.92404 1.03120 1.20793 0.95477 0.96878 0.96632 1.17870 0.95659 0.92966 1.02192 0.92683 0.92841 0.93038 0.75652 0.83134 0.85796 0.85878 0.85093 0.75593 0.85410 0.85333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.62 13.29 55.43 0.74 -24.88 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.90 21.60 29.54 -169.99 -5.02 16.58 16 4 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.51 -14.36 8.92 -34.44 -0.31 -14.67 16 8 H 0.08 2.20 6.75 -52.49 -0.35 1.84 16 9 C 0.01 0.17 5.46 -29.03 -0.16 0.01 16 10 C 0.51 11.11 7.62 -10.99 -0.08 11.03 16 11 O -0.52 -12.56 12.63 5.54 0.07 -12.49 16 12 N -0.68 -11.69 5.17 -9.64 -0.05 -11.74 16 13 C 0.18 3.02 6.44 -83.39 -0.54 2.48 16 14 C -0.15 -2.56 8.70 -39.38 -0.34 -2.90 16 15 C -0.08 -1.03 9.94 -39.98 -0.40 -1.43 16 16 C -0.15 -1.91 9.75 -39.45 -0.38 -2.29 16 17 C -0.02 -0.21 5.74 -106.85 -0.61 -0.82 16 18 C -0.14 -1.61 9.68 -39.33 -0.38 -1.99 16 19 C 0.11 1.21 6.65 -39.59 -0.26 0.95 16 20 O -0.50 -4.80 13.47 -19.36 -0.26 -5.06 16 21 C -0.15 -1.71 9.88 -39.78 -0.39 -2.10 16 22 C -0.08 -1.00 9.45 -39.54 -0.37 -1.37 16 23 C -0.08 -1.24 5.75 -106.67 -0.61 -1.85 16 24 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 25 H 0.05 1.30 8.14 -51.93 -0.42 0.88 16 26 H 0.05 1.25 8.14 -51.93 -0.42 0.82 16 27 H 0.41 5.72 7.23 -40.82 -0.30 5.43 16 28 H 0.15 2.89 5.75 -52.49 -0.30 2.59 16 29 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 30 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 31 H 0.13 1.24 8.06 -52.48 -0.42 0.82 16 32 H 0.39 1.82 9.06 45.56 0.41 2.23 16 33 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 34 H 0.13 1.40 6.69 -52.49 -0.35 1.05 16 LS Contribution 297.17 15.07 4.48 4.48 Total: -1.00 -32.61 297.17 -7.55 -40.17 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -2.56 Total: 6.42 kcal Atomic # 6 Polarization: -8.53 SS G_CDS: -4.95 Total: -13.47 kcal Atomic # 7 Polarization: -37.31 SS G_CDS: 0.69 Total: -36.63 kcal Atomic # 8 Polarization: -17.36 SS G_CDS: -0.19 Total: -17.55 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -32.61 -7.55 -40.17 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143201158.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.471 kcal (2) G-P(sol) polarization free energy of solvation -32.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds