Wall clock time and date at job start Mon Mar 30 2020 01:34:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 120.00290 * 2 1 4 4 H 1.48492 * 109.47299 * 240.00291 * 3 2 1 5 5 H 1.48507 * 109.46729 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47097 * 120.00009 * 3 2 1 7 7 C 1.37879 * 119.99480 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99844 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00389 * 359.97438 * 7 2 1 10 10 C 1.50698 * 109.47072 * 179.97438 * 9 7 2 11 11 O 1.21295 * 120.00062 * 0.02562 * 10 9 7 12 12 N 1.34776 * 119.99767 * 179.97438 * 10 9 7 13 13 C 1.39600 * 119.99651 * 174.48501 * 12 10 9 14 14 C 1.37844 * 120.29380 * 335.12371 * 13 12 10 15 15 C 1.39158 * 120.75797 * 179.67691 * 14 13 12 16 16 C 1.36168 * 121.07473 * 0.62860 * 15 14 13 17 17 C 1.40550 * 119.95026 * 359.68140 * 16 15 14 18 18 C 1.40497 * 121.15284 * 180.02562 * 17 16 15 19 19 C 1.36578 * 119.63234 * 179.97438 * 18 17 16 20 20 O 1.35878 * 119.57260 * 179.97438 * 19 18 17 21 21 C 1.39821 * 120.85372 * 359.97438 * 19 18 17 22 22 C 1.36046 * 120.90367 * 0.02562 * 21 19 18 23 23 C 1.40428 * 119.74816 * 359.97438 * 22 21 19 24 24 H 0.96998 * 119.99778 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.46530 * 60.00060 * 9 7 2 26 26 H 1.09001 * 109.46978 * 300.00565 * 9 7 2 27 27 H 0.96995 * 119.99992 * 354.49102 * 12 10 9 28 28 H 1.08001 * 119.62064 * 0.02562 * 14 13 12 29 29 H 1.07999 * 119.46601 * 180.31363 * 15 14 13 30 30 H 1.07996 * 120.02575 * 179.69987 * 16 15 14 31 31 H 1.08004 * 120.18285 * 359.97438 * 18 17 16 32 32 H 0.96703 * 114.00186 * 90.00369 * 20 19 18 33 33 H 1.07998 * 119.55419 * 180.02562 * 21 19 18 34 34 H 1.07999 * 120.12792 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2302 -3.6447 -0.0018 11 8 3.4227 -3.4231 -0.0022 12 7 1.7809 -4.9153 -0.0015 13 6 2.6826 -5.9745 -0.1189 14 6 3.9042 -5.7834 -0.7283 15 6 4.8131 -6.8308 -0.8446 16 6 4.5177 -8.0734 -0.3725 17 6 3.2803 -8.3117 0.2499 18 6 2.9495 -9.5837 0.7465 19 6 1.7384 -9.7804 1.3463 20 8 1.4195 -11.0112 1.8257 21 6 0.8224 -8.7317 1.4735 22 6 1.1133 -7.4889 1.0028 23 6 2.3496 -7.2512 0.3805 24 1 -0.4850 0.8400 0.0004 25 1 0.6240 -2.5567 -0.8903 26 1 0.6245 -2.5571 0.8896 27 1 0.8310 -5.0938 0.0802 28 1 4.1611 -4.8083 -1.1150 29 1 5.7663 -6.6565 -1.3214 30 1 5.2338 -8.8751 -0.4761 31 1 3.6491 -10.4013 0.6544 32 1 1.6796 -11.1544 2.7460 33 1 -0.1292 -8.9107 1.9519 34 1 0.3963 -6.6880 1.1074 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143201158.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:16 Heat of formation + Delta-G solvation = -59.758596 kcal Electronic energy + Delta-G solvation = -19401.347349 eV Core-core repulsion = 16263.072116 eV Total energy + Delta-G solvation = -3138.275233 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.100 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.96427 -40.57712 -38.88588 -36.24847 -35.99128 -35.14670 -32.64954 -31.17389 -30.55205 -29.20651 -25.99104 -24.42811 -24.10132 -22.87380 -21.29606 -19.82360 -18.88586 -18.61306 -17.97817 -17.48213 -16.93318 -16.66761 -16.34823 -16.18041 -15.34601 -15.17222 -14.84462 -14.74444 -14.50215 -14.19874 -14.01753 -13.43683 -13.27250 -12.83841 -12.64466 -12.54697 -12.50010 -12.18640 -12.05037 -11.66754 -11.51326 -11.41004 -10.65044 -10.57201 -10.19655 -9.49736 -8.46236 -8.27989 -6.35717 -0.48421 -0.04139 0.92204 1.40461 1.42694 1.51220 1.72254 2.00537 2.10497 2.43078 3.04815 3.08373 3.29150 3.69285 3.85300 3.89195 4.10789 4.23972 4.31782 4.35634 4.51772 4.66882 4.86837 4.91803 5.01252 5.09838 5.18280 5.24711 5.38931 5.43275 5.47553 5.60387 5.70269 5.77114 5.98473 6.04728 6.50602 6.76824 6.87313 7.21534 7.35454 8.83864 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.033365 B = 0.003916 C = 0.003556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.990927 B = 7148.568934 C = 7871.026139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.013 3.987 3 Si 0.964 3.036 4 H -0.272 1.272 5 H -0.275 1.275 6 H -0.272 1.272 7 C -0.540 4.540 8 H 0.058 0.942 9 C 0.011 3.989 10 C 0.519 3.481 11 O -0.550 6.550 12 N -0.665 5.665 13 C 0.151 3.849 14 C -0.169 4.169 15 C -0.090 4.090 16 C -0.131 4.131 17 C -0.031 4.031 18 C -0.138 4.138 19 C 0.112 3.888 20 O -0.506 6.506 21 C -0.142 4.142 22 C -0.097 4.097 23 C -0.094 4.094 24 H 0.268 0.732 25 H 0.049 0.951 26 H 0.049 0.951 27 H 0.421 0.579 28 H 0.119 0.881 29 H 0.145 0.855 30 H 0.160 0.840 31 H 0.157 0.843 32 H 0.412 0.588 33 H 0.150 0.850 34 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.953 -21.154 2.775 21.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.186 4.186 3 Si 0.789 3.211 4 H -0.197 1.197 5 H -0.199 1.199 6 H -0.198 1.198 7 C -0.578 4.578 8 H 0.076 0.924 9 C -0.028 4.028 10 C 0.310 3.690 11 O -0.427 6.427 12 N -0.310 5.310 13 C 0.055 3.945 14 C -0.191 4.191 15 C -0.109 4.109 16 C -0.150 4.150 17 C -0.032 4.032 18 C -0.156 4.156 19 C 0.067 3.933 20 O -0.320 6.320 21 C -0.160 4.160 22 C -0.115 4.115 23 C -0.096 4.096 24 H 0.077 0.923 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.259 0.741 28 H 0.137 0.863 29 H 0.163 0.837 30 H 0.178 0.822 31 H 0.174 0.826 32 H 0.272 0.728 33 H 0.168 0.832 34 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 3.351 -20.877 2.222 21.261 hybrid contribution -0.107 1.244 0.439 1.324 sum 3.244 -19.633 2.662 20.076 Atomic orbital electron populations 1.70014 1.07116 1.28282 1.50821 1.25762 0.95833 1.02692 0.94338 0.85509 0.78361 0.78312 0.78925 1.19729 1.19937 1.19761 1.21317 0.93785 0.91010 1.51717 0.92390 1.19110 0.94082 0.90210 0.99447 1.21784 0.90414 0.83861 0.72949 1.90502 1.18768 1.84878 1.48552 1.43658 1.10884 1.04363 1.72069 1.18021 0.92030 0.87288 0.97182 1.21407 0.94850 1.01112 1.01685 1.20944 0.99322 0.92078 0.98512 1.21226 0.96207 0.97824 0.99746 1.17969 0.94253 0.92660 0.98322 1.21413 0.97171 0.96163 1.00860 1.18197 0.92374 0.84807 0.97876 1.84768 1.83648 1.28918 1.34654 1.21297 1.01202 0.91788 1.01730 1.20940 0.95187 0.98033 0.97312 1.18007 0.96914 0.92190 1.02475 0.92289 0.93341 0.93294 0.74095 0.86295 0.83687 0.82232 0.82551 0.72832 0.83244 0.84439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.12 13.29 21.45 0.28 -52.84 16 2 C 0.01 0.72 5.46 84.65 0.46 1.19 16 3 Si 0.96 44.70 29.54 68.60 2.03 46.73 16 4 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 5 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 6 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 7 C -0.54 -31.22 8.92 25.60 0.23 -30.99 16 8 H 0.06 3.50 6.75 -2.91 -0.02 3.48 16 9 C 0.01 0.55 5.46 29.10 0.16 0.71 16 10 C 0.52 23.59 7.62 87.66 0.67 24.26 16 11 O -0.55 -28.35 12.63 -3.08 -0.04 -28.39 16 12 N -0.67 -23.67 5.17 -302.81 -1.56 -25.23 16 13 C 0.15 5.15 6.44 38.51 0.25 5.40 16 14 C -0.17 -5.96 8.70 22.40 0.19 -5.76 16 15 C -0.09 -2.43 9.94 22.01 0.22 -2.21 16 16 C -0.13 -2.98 9.75 22.35 0.22 -2.76 16 17 C -0.03 -0.78 5.74 -21.31 -0.12 -0.90 16 18 C -0.14 -2.71 9.68 22.43 0.22 -2.49 16 19 C 0.11 2.14 6.65 22.26 0.15 2.28 16 20 O -0.51 -7.60 13.47 -92.18 -1.24 -8.84 16 21 C -0.14 -2.81 9.88 22.14 0.22 -2.59 16 22 C -0.10 -2.29 9.45 22.29 0.21 -2.08 16 23 C -0.09 -2.67 5.75 -21.19 -0.12 -2.80 16 24 H 0.27 14.53 8.31 -92.71 -0.77 13.76 16 25 H 0.05 2.46 8.14 -2.39 -0.02 2.44 16 26 H 0.05 2.46 8.14 -2.39 -0.02 2.44 16 27 H 0.42 12.15 7.23 -92.71 -0.67 11.48 16 28 H 0.12 4.92 5.75 -2.91 -0.02 4.91 16 29 H 0.15 3.14 8.06 -2.91 -0.02 3.11 16 30 H 0.16 2.40 8.06 -2.91 -0.02 2.38 16 31 H 0.16 2.23 8.06 -2.91 -0.02 2.21 16 32 H 0.41 2.09 9.06 -74.06 -0.67 1.41 16 33 H 0.15 2.27 8.06 -2.91 -0.02 2.25 16 34 H 0.14 2.87 6.69 -2.91 -0.02 2.85 16 Total: -1.00 -71.62 297.17 2.23 -69.38 By element: Atomic # 1 Polarization: 18.11 SS G_CDS: -0.18 Total: 17.94 kcal Atomic # 6 Polarization: -21.69 SS G_CDS: 2.95 Total: -18.75 kcal Atomic # 7 Polarization: -76.79 SS G_CDS: -1.28 Total: -78.07 kcal Atomic # 8 Polarization: -35.95 SS G_CDS: -1.28 Total: -37.23 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Total: -71.62 2.23 -69.38 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143201158.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.624 kcal (2) G-P(sol) polarization free energy of solvation -71.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds