Wall clock time and date at job start Mon Mar 30 2020 01:11:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.46896 * 2 1 4 4 H 1.08995 * 109.47661 * 54.99706 * 3 2 1 5 5 C 1.50699 * 109.46675 * 174.99793 * 3 2 1 6 6 H 1.08005 * 119.99933 * 119.99556 * 5 3 2 7 7 C 1.37879 * 120.00275 * 299.99852 * 5 3 2 8 8 N 1.31507 * 119.99953 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00040 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47454 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.47235 * 119.99673 * 9 7 5 12 12 H 1.48500 * 109.46918 * 239.99642 * 9 7 5 13 13 N 1.46499 * 109.46817 * 294.99584 * 3 2 1 14 14 C 1.34776 * 120.00225 * 85.00796 * 13 3 2 15 15 O 1.21614 * 119.99624 * 359.97438 * 14 13 3 16 16 C 1.47381 * 120.00060 * 179.97438 * 14 13 3 17 17 C 1.38069 * 126.42666 * 0.24479 * 16 14 13 18 18 N 1.34225 * 107.43823 * 180.17111 * 17 16 14 19 19 C 1.46506 * 125.73848 * 179.90482 * 18 17 16 20 20 N 1.39933 * 108.52655 * 359.63598 * 18 17 16 21 21 C 1.30527 * 108.89043 * 0.22987 * 20 18 17 22 22 Cl 1.73600 * 126.00501 * 180.02562 * 21 20 18 23 23 H 1.09002 * 109.47375 * 300.00902 * 1 2 3 24 24 H 1.08997 * 109.46971 * 59.99969 * 1 2 3 25 25 H 1.08998 * 109.47304 * 180.02562 * 1 2 3 26 26 H 1.08993 * 109.47256 * 239.99680 * 2 1 3 27 27 H 1.09005 * 109.46858 * 119.99377 * 2 1 3 28 28 H 0.97003 * 120.00542 * 180.02562 * 8 7 5 29 29 H 0.97005 * 119.99623 * 265.00298 * 13 3 2 30 30 H 1.08000 * 126.27885 * 0.05805 * 17 16 14 31 31 H 1.09001 * 109.47060 * 269.71759 * 19 18 17 32 32 H 1.09004 * 109.47073 * 29.71248 * 19 18 17 33 33 H 1.09000 * 109.47212 * 149.71330 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9817 0.8417 5 6 3.5418 1.4443 0.1239 6 1 4.1472 1.8888 -0.6523 7 6 4.1432 0.8784 1.2280 8 7 3.4062 0.3367 2.1729 9 14 6.0048 0.8813 1.3819 10 1 6.5987 1.5462 0.1943 11 1 6.3989 1.6168 2.6103 12 1 6.4969 -0.5175 1.4632 13 7 1.6524 2.0974 -1.2519 14 6 0.4352 2.6644 -1.3671 15 8 -0.3417 2.6319 -0.4320 16 6 0.0455 3.3237 -2.6263 17 6 0.8160 3.4336 -3.7667 18 7 0.0938 4.1057 -4.6769 19 6 0.5307 4.4480 -6.0328 20 7 -1.1489 4.4189 -4.1152 21 6 -1.1891 3.9584 -2.8945 22 17 -2.5242 4.0996 -1.7940 23 1 -0.3634 0.5140 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 3.8292 -0.0611 2.9499 29 1 2.2720 2.1230 -1.9978 30 1 1.8170 3.0508 -3.9011 31 1 1.0207 5.4217 -6.0216 32 1 1.2310 3.6930 -6.3904 33 1 -0.3343 4.4840 -6.6950 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001153703726.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:10 Heat of formation + Delta-G solvation = 32.779260 kcal Electronic energy + Delta-G solvation = -18655.782103 eV Core-core repulsion = 15551.379514 eV Total energy + Delta-G solvation = -3104.402589 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.36756 -38.53076 -36.55067 -34.93374 -33.26141 -32.40697 -31.23574 -29.94971 -27.28548 -26.65881 -23.32345 -22.35856 -21.14233 -20.10840 -19.19939 -17.92942 -16.44476 -15.89513 -15.50628 -15.21994 -14.99107 -14.32062 -14.21299 -13.51796 -13.35897 -13.20762 -12.72780 -12.60249 -11.94507 -11.60009 -11.50083 -11.40547 -11.21303 -10.93698 -10.81576 -10.60961 -10.28068 -10.11182 -9.57153 -9.39409 -9.01737 -8.93898 -8.64093 -8.46743 -7.72470 -6.09965 -4.19138 1.48843 1.50905 2.11965 2.72742 3.24189 3.32152 3.34021 4.10150 4.18396 4.33232 4.44017 4.58220 4.83932 5.08855 5.19080 5.21521 5.34148 5.71811 6.04558 6.46870 6.54827 6.62635 6.74640 7.12173 7.25499 7.30920 7.44186 7.53005 7.66270 7.79785 7.95623 8.22708 8.73521 8.82894 9.22979 9.48763 10.95373 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.022922 B = 0.005307 C = 0.004598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.248788 B = 5274.354817 C = 6087.567076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.272 3.728 4 H 0.051 0.949 5 C -0.532 4.532 6 H 0.060 0.940 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.899 3.101 10 H -0.274 1.274 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.706 5.706 14 C 0.574 3.426 15 O -0.534 6.534 16 C -0.260 4.260 17 C 0.101 3.899 18 N -0.356 5.356 19 C 0.099 3.901 20 N -0.293 5.293 21 C 0.169 3.831 22 Cl 0.030 6.970 23 H 0.050 0.950 24 H 0.040 0.960 25 H 0.021 0.979 26 H 0.029 0.971 27 H 0.098 0.902 28 H 0.263 0.737 29 H 0.383 0.617 30 H 0.191 0.809 31 H 0.081 0.919 32 H 0.094 0.906 33 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.911 5.711 -15.054 16.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.165 4.165 3 C 0.170 3.830 4 H 0.069 0.931 5 C -0.571 4.571 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.518 5.518 9 Si 0.727 3.273 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.353 5.353 14 C 0.359 3.641 15 O -0.412 6.412 16 C -0.276 4.276 17 C -0.049 4.049 18 N -0.137 5.137 19 C -0.042 4.042 20 N -0.118 5.118 21 C -0.023 4.023 22 Cl 0.057 6.943 23 H 0.069 0.931 24 H 0.059 0.941 25 H 0.040 0.960 26 H 0.048 0.952 27 H 0.116 0.884 28 H 0.074 0.926 29 H 0.215 0.785 30 H 0.208 0.792 31 H 0.099 0.901 32 H 0.113 0.887 33 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -5.147 6.252 -15.107 17.141 hybrid contribution 1.701 -0.427 0.311 1.781 sum -3.445 5.824 -14.796 16.270 Atomic orbital electron populations 1.21840 0.98238 0.97949 1.01453 1.21928 0.92716 0.99780 1.02122 1.18781 0.94067 0.89156 0.80959 0.93118 1.21259 0.90763 1.38844 1.06222 0.92149 1.24875 0.98451 0.94889 0.95443 1.69903 1.34961 1.37655 1.09323 0.86432 0.85069 0.77715 0.78076 1.19834 1.20919 1.20935 1.46319 1.14193 1.56386 1.18438 1.17061 0.82903 0.78785 0.85380 1.90785 1.51316 1.59836 1.39237 1.20636 0.95170 1.13873 0.97915 1.23173 0.98325 0.94999 0.88392 1.48106 1.10522 1.42463 1.12595 1.22025 1.01635 1.02491 0.78027 1.77151 1.00612 1.25133 1.08950 1.22673 0.91122 0.97724 0.90820 1.98418 1.41900 1.96486 1.57448 0.93071 0.94090 0.96034 0.95174 0.88382 0.92645 0.78520 0.79171 0.90089 0.88716 0.88863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.10 8.51 37.16 0.32 -2.78 16 2 C -0.13 -3.05 5.45 -26.73 -0.15 -3.20 16 3 C 0.27 6.73 2.24 -69.08 -0.15 6.57 16 4 H 0.05 1.46 7.58 -51.93 -0.39 1.07 16 5 C -0.53 -13.72 8.73 -34.44 -0.30 -14.02 16 6 H 0.06 1.48 7.74 -52.48 -0.41 1.07 16 7 C 0.07 1.76 5.29 -17.82 -0.09 1.66 16 8 N -0.88 -24.44 11.29 55.43 0.63 -23.82 16 9 Si 0.90 20.26 29.54 -169.99 -5.02 15.23 16 10 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 11 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 12 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 13 N -0.71 -14.31 5.01 -56.02 -0.28 -14.59 16 14 C 0.57 11.67 6.38 -12.54 -0.08 11.59 16 15 O -0.53 -12.54 12.85 5.27 0.07 -12.48 16 16 C -0.26 -4.36 6.13 -105.04 -0.64 -5.00 16 17 C 0.10 1.24 10.99 -16.57 -0.18 1.06 16 18 N -0.36 -4.11 3.98 -67.59 -0.27 -4.38 16 19 C 0.10 0.58 11.44 59.85 0.68 1.27 16 20 N -0.29 -4.41 12.50 33.18 0.41 -3.99 16 21 C 0.17 2.84 7.88 -16.91 -0.13 2.71 16 22 Cl 0.03 0.49 28.00 -51.86 -1.45 -0.96 16 23 H 0.05 1.23 7.84 -51.93 -0.41 0.82 16 24 H 0.04 0.91 5.64 -51.93 -0.29 0.61 16 25 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.10 2.62 5.95 -51.93 -0.31 2.31 16 28 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 29 H 0.38 6.50 7.46 -40.82 -0.30 6.20 16 30 H 0.19 1.58 7.46 -52.49 -0.39 1.19 16 31 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.09 0.31 8.14 -51.93 -0.42 -0.12 16 33 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 296.22 15.07 4.46 4.46 Total: -1.00 -32.25 296.22 -5.94 -38.19 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: -3.75 Total: 2.48 kcal Atomic # 6 Polarization: 0.58 SS G_CDS: -0.73 Total: -0.15 kcal Atomic # 7 Polarization: -47.27 SS G_CDS: 0.49 Total: -46.77 kcal Atomic # 8 Polarization: -12.54 SS G_CDS: 0.07 Total: -12.48 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.23 kcal Atomic # 17 Polarization: 0.49 SS G_CDS: -1.45 Total: -0.96 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -32.25 -5.94 -38.19 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153703726.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.966 kcal (2) G-P(sol) polarization free energy of solvation -32.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.186 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds