Wall clock time and date at job start Mon Mar 30 2020 00:57:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86802 * 120.00173 * 2 1 4 4 H 1.48505 * 109.47064 * 270.00242 * 3 2 1 5 5 H 1.48500 * 109.47062 * 29.99778 * 3 2 1 6 6 H 1.48502 * 109.47389 * 149.99849 * 3 2 1 7 7 C 1.38814 * 120.00281 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00311 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99761 * 359.97438 * 7 2 1 10 10 C 1.46501 * 119.99912 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.47121 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47056 * 179.97438 * 11 10 9 13 13 N 1.46502 * 109.47047 * 180.02562 * 12 11 10 14 14 C 1.34777 * 120.00154 * 180.02562 * 13 12 11 15 15 O 1.21696 * 119.99914 * 0.02562 * 14 13 12 16 16 C 1.46672 * 119.99871 * 179.97438 * 14 13 12 17 17 C 1.37893 * 126.21753 * 179.97438 * 16 14 13 18 18 C 1.39892 * 107.09191 * 179.71707 * 17 16 14 19 19 Cl 1.73597 * 126.07283 * 180.24703 * 18 17 16 20 20 C 1.35520 * 107.85278 * 0.26344 * 18 17 16 21 21 N 1.35632 * 108.84712 * 0.02562 * 20 18 17 22 22 H 0.97002 * 125.67301 * 179.97438 * 21 20 18 23 23 H 0.97004 * 120.00043 * 0.02562 * 1 2 3 24 24 H 0.96999 * 120.00322 * 359.97438 * 9 7 2 25 25 H 1.08996 * 109.47310 * 60.00112 * 10 9 7 26 26 H 1.08999 * 109.46789 * 299.99942 * 10 9 7 27 27 H 1.09004 * 109.46658 * 60.00235 * 11 10 9 28 28 H 1.09003 * 109.46938 * 300.00348 * 11 10 9 29 29 H 1.08996 * 109.47173 * 60.00389 * 12 11 10 30 30 H 1.08997 * 109.47362 * 299.99796 * 12 11 10 31 31 H 0.97005 * 119.99962 * 359.97438 * 13 12 11 32 32 H 1.08002 * 126.45818 * 359.97438 * 17 16 14 33 33 H 1.07989 * 125.57629 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6567 -0.0005 11 6 1.0639 -4.8197 0.0001 12 6 1.8289 -6.1447 -0.0005 13 7 0.8769 -7.2582 -0.0005 14 6 1.3262 -8.5289 -0.0005 15 8 2.5227 -8.7513 -0.0001 16 6 0.3730 -9.6437 0.0000 17 6 0.6891 -10.9859 -0.0004 18 6 -0.5181 -11.6927 0.0070 19 17 -0.6914 -13.4199 0.0157 20 6 -1.5283 -10.7893 0.0058 21 7 -0.9994 -9.5404 -0.0027 22 1 -1.5044 -8.7122 -0.0056 23 1 -0.4850 0.8401 -0.0004 24 1 0.3556 -2.3881 0.0002 25 1 2.6848 -3.7145 0.8894 26 1 2.6848 -3.7144 -0.8905 27 1 0.4369 -4.7621 -0.8897 28 1 0.4375 -4.7617 0.8903 29 1 2.4562 -6.2025 0.8890 30 1 2.4549 -6.2024 -0.8910 31 1 -0.0768 -7.0810 0.0002 32 1 1.6818 -11.4115 -0.0016 33 1 -2.5821 -11.0253 0.0100 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001154574795.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:26 Heat of formation + Delta-G solvation = 4.658519 kcal Electronic energy + Delta-G solvation = -17159.163559 eV Core-core repulsion = 14053.541563 eV Total energy + Delta-G solvation = -3105.621996 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.74294 -39.31740 -36.70123 -36.15235 -34.48924 -32.19433 -31.31059 -30.23277 -29.06669 -25.51237 -23.38929 -22.28690 -21.30400 -20.96231 -20.51011 -19.18114 -17.08355 -16.23357 -15.96167 -15.92866 -15.05813 -14.86783 -14.58447 -14.06692 -13.98745 -13.68127 -13.31640 -13.25136 -13.05858 -12.53890 -12.15590 -11.74474 -11.16587 -11.05735 -10.98392 -10.85802 -10.69793 -10.32416 -10.08099 -9.75771 -9.34504 -9.23270 -8.92777 -8.65060 -6.98964 -5.82084 -3.11203 1.03677 1.83832 2.07471 2.67917 3.00562 3.09118 3.41031 3.46303 3.47942 4.48300 4.53896 4.55170 4.79069 5.00005 5.20559 5.22231 5.50654 5.51986 5.52639 5.85662 5.96191 6.01203 6.09842 6.17241 6.24125 6.30207 6.71216 6.75540 6.76976 7.25333 7.65979 7.93286 8.36838 9.48111 10.04387 10.38939 11.40916 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.065430 B = 0.002384 C = 0.002305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 427.835215 B =11742.990714 C =12145.061015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.015 4.015 3 Si 0.909 3.091 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.241 4.241 8 H 0.072 0.928 9 N -0.734 5.734 10 C 0.156 3.844 11 C -0.138 4.138 12 C 0.123 3.877 13 N -0.726 5.726 14 C 0.586 3.414 15 O -0.524 6.524 16 C -0.037 4.037 17 C -0.095 4.095 18 C -0.128 4.128 19 Cl -0.048 7.048 20 C 0.041 3.959 21 N -0.530 5.530 22 H 0.425 0.575 23 H 0.255 0.745 24 H 0.383 0.617 25 H 0.023 0.977 26 H 0.023 0.977 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.394 0.606 32 H 0.158 0.842 33 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.573 -24.053 0.030 24.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.211 4.211 3 Si 0.740 3.260 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.372 4.372 8 H 0.090 0.910 9 N -0.378 5.378 10 C 0.028 3.972 11 C -0.176 4.176 12 C -0.001 4.001 13 N -0.377 5.377 14 C 0.372 3.628 15 O -0.400 6.400 16 C -0.150 4.150 17 C -0.122 4.122 18 C -0.161 4.161 19 Cl -0.020 7.020 20 C -0.097 4.097 21 N -0.127 5.127 22 H 0.264 0.736 23 H 0.065 0.935 24 H 0.217 0.783 25 H 0.041 0.959 26 H 0.041 0.959 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.228 0.772 32 H 0.176 0.824 33 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -4.592 -24.030 0.036 24.465 hybrid contribution -0.752 1.235 -0.011 1.446 sum -5.344 -22.795 0.025 23.413 Atomic orbital electron populations 1.69655 1.05158 1.25735 1.57816 1.24761 0.95575 0.97811 1.02924 0.86157 0.78671 0.83610 0.77570 1.21649 1.21733 1.20677 1.19247 0.91133 0.84077 1.42718 0.91040 1.42331 1.05838 0.99993 1.89665 1.20519 0.93227 0.85103 0.98352 1.21958 0.99660 0.93329 1.02682 1.21435 0.91556 0.84117 1.02947 1.45960 1.10486 1.05788 1.75434 1.16947 0.87332 0.81503 0.76974 1.90875 1.14937 1.84243 1.49950 1.20456 0.82167 0.95304 1.17076 1.21188 0.98426 0.89913 1.02681 1.19972 0.94336 0.85390 1.16411 1.98334 1.97832 1.08114 1.97677 1.21759 0.99010 0.82531 1.06358 1.41945 1.06179 1.08347 1.56252 0.73618 0.93482 0.78337 0.95945 0.95933 0.91291 0.91283 0.90892 0.90897 0.77222 0.82442 0.80145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 56. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.98 13.06 55.49 0.72 -27.25 16 2 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 3 Si 0.91 22.27 29.55 -169.99 -5.02 17.25 16 4 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 7 C -0.24 -6.71 9.99 -15.06 -0.15 -6.86 16 8 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 9 N -0.73 -18.29 5.60 -59.91 -0.34 -18.62 16 10 C 0.16 3.01 6.26 -4.04 -0.03 2.98 16 11 C -0.14 -1.97 5.44 -26.73 -0.15 -2.11 16 12 C 0.12 1.55 5.67 -4.04 -0.02 1.53 16 13 N -0.73 -7.65 5.55 -61.62 -0.34 -7.99 16 14 C 0.59 7.24 7.79 -12.86 -0.10 7.14 16 15 O -0.52 -8.50 16.88 5.19 0.09 -8.41 16 16 C -0.04 -0.37 7.05 -81.98 -0.58 -0.94 16 17 C -0.10 -0.99 10.65 -39.09 -0.42 -1.40 16 18 C -0.13 -1.12 6.66 -39.93 -0.27 -1.39 16 19 Cl -0.05 -0.40 29.30 -51.86 -1.52 -1.92 16 20 C 0.04 0.26 11.87 -16.84 -0.20 0.06 16 21 N -0.53 -3.43 6.00 -9.36 -0.06 -3.48 16 22 H 0.42 1.47 8.19 -40.82 -0.33 1.13 16 23 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 24 H 0.38 9.90 7.67 -40.82 -0.31 9.58 16 25 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.39 2.96 7.60 -40.82 -0.31 2.65 16 32 H 0.16 1.64 8.06 -52.49 -0.42 1.21 16 33 H 0.18 0.59 8.06 -52.49 -0.42 0.16 16 LS Contribution 308.72 15.07 4.65 4.65 Total: -1.00 -33.79 308.72 -7.70 -41.49 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -3.89 Total: 5.82 kcal Atomic # 6 Polarization: 0.48 SS G_CDS: -2.00 Total: -1.52 kcal Atomic # 7 Polarization: -57.34 SS G_CDS: -0.01 Total: -57.35 kcal Atomic # 8 Polarization: -8.50 SS G_CDS: 0.09 Total: -8.41 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Atomic # 17 Polarization: -0.40 SS G_CDS: -1.52 Total: -1.92 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -33.79 -7.70 -41.49 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154574795.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.144 kcal (2) G-P(sol) polarization free energy of solvation -33.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.486 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds