Wall clock time and date at job start Mon Mar 30 2020 00:57:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86802 * 120.00173 * 2 1 4 4 H 1.48505 * 109.47064 * 270.00242 * 3 2 1 5 5 H 1.48500 * 109.47062 * 29.99778 * 3 2 1 6 6 H 1.48502 * 109.47389 * 149.99849 * 3 2 1 7 7 C 1.38814 * 120.00281 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00311 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99761 * 359.97438 * 7 2 1 10 10 C 1.46501 * 119.99912 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.47121 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47056 * 179.97438 * 11 10 9 13 13 N 1.46502 * 109.47047 * 180.02562 * 12 11 10 14 14 C 1.34777 * 120.00154 * 180.02562 * 13 12 11 15 15 O 1.21696 * 119.99914 * 0.02562 * 14 13 12 16 16 C 1.46672 * 119.99871 * 179.97438 * 14 13 12 17 17 C 1.37893 * 126.21753 * 179.97438 * 16 14 13 18 18 C 1.39892 * 107.09191 * 179.71707 * 17 16 14 19 19 Cl 1.73597 * 126.07283 * 180.24703 * 18 17 16 20 20 C 1.35520 * 107.85278 * 0.26344 * 18 17 16 21 21 N 1.35632 * 108.84712 * 0.02562 * 20 18 17 22 22 H 0.97002 * 125.67301 * 179.97438 * 21 20 18 23 23 H 0.97004 * 120.00043 * 0.02562 * 1 2 3 24 24 H 0.96999 * 120.00322 * 359.97438 * 9 7 2 25 25 H 1.08996 * 109.47310 * 60.00112 * 10 9 7 26 26 H 1.08999 * 109.46789 * 299.99942 * 10 9 7 27 27 H 1.09004 * 109.46658 * 60.00235 * 11 10 9 28 28 H 1.09003 * 109.46938 * 300.00348 * 11 10 9 29 29 H 1.08996 * 109.47173 * 60.00389 * 12 11 10 30 30 H 1.08997 * 109.47362 * 299.99796 * 12 11 10 31 31 H 0.97005 * 119.99962 * 359.97438 * 13 12 11 32 32 H 1.08002 * 126.45818 * 359.97438 * 17 16 14 33 33 H 1.07989 * 125.57629 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6567 -0.0005 11 6 1.0639 -4.8197 0.0001 12 6 1.8289 -6.1447 -0.0005 13 7 0.8769 -7.2582 -0.0005 14 6 1.3262 -8.5289 -0.0005 15 8 2.5227 -8.7513 -0.0001 16 6 0.3730 -9.6437 0.0000 17 6 0.6891 -10.9859 -0.0004 18 6 -0.5181 -11.6927 0.0070 19 17 -0.6914 -13.4199 0.0157 20 6 -1.5283 -10.7893 0.0058 21 7 -0.9994 -9.5404 -0.0027 22 1 -1.5044 -8.7122 -0.0056 23 1 -0.4850 0.8401 -0.0004 24 1 0.3556 -2.3881 0.0002 25 1 2.6848 -3.7145 0.8894 26 1 2.6848 -3.7144 -0.8905 27 1 0.4369 -4.7621 -0.8897 28 1 0.4375 -4.7617 0.8903 29 1 2.4562 -6.2025 0.8890 30 1 2.4549 -6.2024 -0.8910 31 1 -0.0768 -7.0810 0.0002 32 1 1.6818 -11.4115 -0.0016 33 1 -2.5821 -11.0253 0.0100 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001154574795.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:26 Heat of formation + Delta-G solvation = -20.088901 kcal Electronic energy + Delta-G solvation = -17160.236688 eV Core-core repulsion = 14053.541563 eV Total energy + Delta-G solvation = -3106.695125 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.42513 -40.28017 -37.54491 -37.33381 -36.00390 -33.84560 -32.07278 -31.56675 -30.11751 -27.05049 -24.86779 -23.41794 -22.65223 -21.65928 -21.26299 -20.08455 -19.07757 -17.25733 -16.95531 -16.90849 -16.42643 -16.00774 -15.53781 -15.31228 -15.10184 -15.04414 -14.64801 -14.32155 -13.90802 -13.86615 -13.32152 -12.83774 -12.79499 -12.62256 -12.45960 -12.09795 -12.07336 -11.82516 -11.80769 -11.32721 -10.95525 -10.31414 -9.94475 -9.30238 -9.02808 -7.97928 -5.26766 0.28401 1.22892 1.42186 1.47730 1.48977 1.57585 1.89603 2.20195 2.26276 2.55537 3.36270 3.70830 3.76064 4.06502 4.07301 4.17655 4.25221 4.40392 4.55019 4.71217 4.71291 4.85387 4.86954 5.19459 5.30013 5.30151 5.33122 5.48365 5.52257 6.24956 6.26954 6.44790 7.02528 7.31839 8.06406 8.30072 9.25510 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.065430 B = 0.002384 C = 0.002305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 427.835215 B =11742.990714 C =12145.061015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.075 4.075 3 Si 0.974 3.026 4 H -0.286 1.286 5 H -0.294 1.294 6 H -0.271 1.271 7 C -0.249 4.249 8 H 0.075 0.925 9 N -0.747 5.747 10 C 0.151 3.849 11 C -0.118 4.118 12 C 0.133 3.867 13 N -0.712 5.712 14 C 0.587 3.413 15 O -0.572 6.572 16 C -0.055 4.055 17 C -0.109 4.109 18 C -0.151 4.151 19 Cl -0.048 7.048 20 C 0.072 3.928 21 N -0.513 5.513 22 H 0.441 0.559 23 H 0.252 0.748 24 H 0.376 0.624 25 H 0.022 0.978 26 H 0.023 0.977 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.412 0.588 32 H 0.145 0.855 33 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.730 -24.492 0.038 25.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.268 4.268 3 Si 0.803 3.197 4 H -0.213 1.213 5 H -0.220 1.220 6 H -0.195 1.195 7 C -0.381 4.381 8 H 0.093 0.907 9 N -0.390 5.390 10 C 0.024 3.976 11 C -0.156 4.156 12 C 0.009 3.991 13 N -0.364 5.364 14 C 0.375 3.625 15 O -0.451 6.451 16 C -0.169 4.169 17 C -0.137 4.137 18 C -0.184 4.184 19 Cl -0.020 7.020 20 C -0.067 4.067 21 N -0.111 5.111 22 H 0.283 0.717 23 H 0.061 0.939 24 H 0.208 0.792 25 H 0.040 0.960 26 H 0.041 0.959 27 H 0.095 0.905 28 H 0.095 0.905 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.248 0.752 32 H 0.163 0.837 33 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -5.763 -24.469 0.043 25.139 hybrid contribution -0.409 1.267 -0.014 1.332 sum -6.172 -23.202 0.029 24.009 Atomic orbital electron populations 1.69795 1.06514 1.26199 1.59355 1.25578 0.96491 1.01139 1.03551 0.85134 0.77707 0.79383 0.77494 1.21320 1.22007 1.19546 1.19640 0.91566 0.85425 1.41458 0.90743 1.42531 1.05745 1.01142 1.89566 1.20687 0.94127 0.84733 0.98077 1.21704 0.98510 0.91972 1.03430 1.21164 0.91563 0.83957 1.02425 1.45724 1.11136 1.04801 1.74708 1.17206 0.87088 0.82168 0.75996 1.90847 1.17020 1.84941 1.52298 1.19982 0.83369 0.94175 1.19368 1.21261 0.98799 0.90627 1.02978 1.20089 0.94423 0.85808 1.18081 1.98331 1.97770 1.08142 1.97758 1.22365 1.00194 0.81585 1.02592 1.41910 1.04847 1.09359 1.54975 0.71666 0.93885 0.79186 0.95970 0.95942 0.90529 0.90522 0.91538 0.91538 0.75204 0.83716 0.76205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.11 13.06 21.65 0.28 -57.82 16 2 C -0.08 -4.28 5.50 84.86 0.47 -3.81 16 3 Si 0.97 45.61 29.55 68.60 2.03 47.64 16 4 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 5 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 6 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 7 C -0.25 -13.81 9.99 84.03 0.84 -12.97 16 8 H 0.07 3.99 7.83 -2.91 -0.02 3.97 16 9 N -0.75 -36.97 5.60 -343.45 -1.92 -38.89 16 10 C 0.15 5.69 6.26 86.38 0.54 6.24 16 11 C -0.12 -3.19 5.44 30.59 0.17 -3.02 16 12 C 0.13 3.23 5.67 86.38 0.49 3.72 16 13 N -0.71 -13.96 5.55 -467.09 -2.59 -16.55 16 14 C 0.59 14.20 7.79 86.45 0.67 14.87 16 15 O -0.57 -18.92 16.88 -4.34 -0.07 -18.99 16 16 C -0.06 -1.04 7.05 40.36 0.28 -0.76 16 17 C -0.11 -2.22 10.65 22.59 0.24 -1.98 16 18 C -0.15 -2.41 6.66 22.04 0.15 -2.26 16 19 Cl -0.05 -0.75 29.30 -2.72 -0.08 -0.83 16 20 C 0.07 0.69 11.87 83.48 0.99 1.68 16 21 N -0.51 -5.16 6.00 -183.51 -1.10 -6.26 16 22 H 0.44 1.47 8.19 -92.71 -0.76 0.72 16 23 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 24 H 0.38 19.38 7.67 -92.71 -0.71 18.67 16 25 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.08 1.99 8.14 -2.38 -0.02 1.97 16 28 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 29 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.41 5.16 7.60 -92.70 -0.70 4.46 16 32 H 0.15 3.19 8.06 -2.91 -0.02 3.16 16 33 H 0.22 0.32 8.06 -2.92 -0.02 0.30 16 Total: -1.00 -73.06 308.72 0.37 -72.69 By element: Atomic # 1 Polarization: 18.34 SS G_CDS: -1.01 Total: 17.33 kcal Atomic # 6 Polarization: -3.15 SS G_CDS: 4.84 Total: 1.69 kcal Atomic # 7 Polarization: -114.20 SS G_CDS: -5.33 Total: -119.53 kcal Atomic # 8 Polarization: -18.92 SS G_CDS: -0.07 Total: -18.99 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.64 kcal Atomic # 17 Polarization: -0.75 SS G_CDS: -0.08 Total: -0.83 kcal Total: -73.06 0.37 -72.69 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154574795.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.598 kcal (2) G-P(sol) polarization free energy of solvation -73.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds