Wall clock time and date at job start Mon Mar 30 2020 00:50:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46502 * 119.99921 * 2 1 4 4 S 1.65599 * 120.00040 * 179.97438 * 2 1 3 5 5 O 1.42100 * 106.40559 * 336.46516 * 4 2 1 6 6 O 1.42101 * 106.40178 * 203.54044 * 4 2 1 7 7 C 1.76205 * 107.21646 * 90.00415 * 4 2 1 8 8 C 1.38874 * 120.33168 * 89.99849 * 7 4 2 9 9 C 1.38315 * 118.50800 * 180.02562 * 8 7 4 10 10 C 1.39228 * 119.08864 * 359.97438 * 9 8 7 11 11 N 1.38832 * 119.71083 * 179.97438 * 10 9 8 12 12 C 1.36914 * 120.00211 * 0.02562 * 11 10 9 13 13 H 1.08001 * 119.99806 * 359.97438 * 12 11 10 14 14 C 1.38812 * 119.99801 * 179.97438 * 12 11 10 15 15 N 1.31563 * 120.00532 * 359.97438 * 14 12 11 16 16 Si 1.86805 * 119.99930 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.47459 * 89.99350 * 16 14 12 18 18 H 1.48495 * 109.47485 * 210.00086 * 16 14 12 19 19 H 1.48505 * 109.46888 * 329.99815 * 16 14 12 20 20 N 1.32496 * 120.57661 * 359.97438 * 10 9 8 21 21 C 1.31898 * 121.61982 * 359.97438 * 20 10 9 22 22 H 1.09007 * 109.47210 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.47617 * 300.00181 * 1 2 3 24 24 H 1.09002 * 109.47221 * 60.00771 * 1 2 3 25 25 H 1.08999 * 109.46818 * 269.99508 * 3 2 1 26 26 H 1.08995 * 109.47008 * 29.99359 * 3 2 1 27 27 H 1.08998 * 109.47347 * 150.00296 * 3 2 1 28 28 H 1.08001 * 120.74845 * 0.02562 * 8 7 4 29 29 H 1.07998 * 120.45711 * 179.72765 * 9 8 7 30 30 H 0.97000 * 119.99780 * 179.97438 * 11 10 9 31 31 H 0.97002 * 120.00446 * 180.02562 * 15 14 12 32 32 H 1.07996 * 119.56307 * 180.02562 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 16 2.2930 -1.4341 0.0006 5 8 1.4113 -2.4063 0.5454 6 8 3.5759 -1.1565 0.5450 7 6 2.5538 -1.8865 -1.6823 8 6 3.6957 -1.4672 -2.3523 9 6 3.8620 -1.8436 -3.6728 10 6 2.8847 -2.6262 -4.2817 11 7 3.0382 -3.0110 -5.6068 12 6 4.1473 -2.6214 -6.3087 13 1 4.9025 -2.0144 -5.8317 14 6 4.3010 -3.0067 -7.6334 15 7 3.3812 -3.7466 -8.2144 16 14 5.8138 -2.4745 -8.5914 17 1 6.8844 -3.4910 -8.4308 18 1 5.4681 -2.3426 -10.0295 19 1 6.2918 -1.1667 -8.0753 20 7 1.8094 -3.0069 -3.6077 21 6 1.6256 -2.6634 -2.3476 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5137 -0.8901 25 1 2.3792 1.5833 -1.0277 26 1 1.6083 2.0284 0.5137 27 1 3.1499 1.1385 0.5138 28 1 4.4373 -0.8607 -1.8535 29 1 4.7360 -1.5315 -4.2251 30 1 2.3601 -3.5566 -6.0351 31 1 3.4888 -4.0161 -9.1400 32 1 0.7369 -2.9925 -1.8297 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155534652.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:43 Heat of formation + Delta-G solvation = -32.937150 kcal Electronic energy + Delta-G solvation = -18536.832276 eV Core-core repulsion = 15431.623716 eV Total energy + Delta-G solvation = -3105.208560 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.078 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.14986 -36.80503 -35.93335 -35.67182 -35.34579 -32.42790 -31.47466 -28.85218 -28.00390 -25.41180 -24.44779 -22.81822 -21.92324 -18.70028 -18.24349 -17.43904 -17.19803 -16.62964 -15.93678 -15.34993 -14.89696 -14.46304 -14.10589 -13.78840 -13.57138 -13.48912 -12.77955 -12.60674 -12.50871 -12.31008 -12.17111 -11.89806 -11.63424 -11.59534 -11.33776 -11.31255 -10.98658 -10.76136 -10.67076 -10.24181 -9.36331 -8.97826 -8.97179 -8.51241 -7.48800 -7.04636 -4.22185 0.94462 1.78849 2.32109 2.92170 2.93957 2.98110 3.40334 3.68265 4.22665 4.38589 4.59475 4.79590 4.89475 5.02269 5.39740 5.41001 5.44411 5.62009 5.64495 5.81577 5.82275 6.05662 6.06067 6.30879 6.56540 6.64035 6.77302 6.82399 6.98528 7.25846 7.64161 8.18088 8.58035 8.85930 9.28530 10.09137 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.036206 B = 0.004460 C = 0.004298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.159837 B = 6277.152296 C = 6512.353271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -1.012 6.012 3 C 0.087 3.913 4 S 2.707 3.293 5 O -0.977 6.977 6 O -0.978 6.978 7 C -0.856 4.856 8 C 0.046 3.954 9 C -0.261 4.261 10 C 0.361 3.639 11 N -0.494 5.494 12 C -0.305 4.305 13 H 0.114 0.886 14 C 0.030 3.970 15 N -0.863 5.863 16 Si 0.945 3.055 17 H -0.270 1.270 18 H -0.276 1.276 19 H -0.263 1.263 20 N -0.577 5.577 21 C 0.258 3.742 22 H 0.085 0.915 23 H 0.058 0.942 24 H 0.057 0.943 25 H 0.053 0.947 26 H 0.068 0.932 27 H 0.080 0.920 28 H 0.124 0.876 29 H 0.127 0.873 30 H 0.407 0.593 31 H 0.285 0.715 32 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.409 8.067 8.807 12.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.850 5.850 3 C -0.058 4.058 4 S 2.802 3.198 5 O -0.967 6.967 6 O -0.968 6.968 7 C -0.959 4.959 8 C 0.020 3.980 9 C -0.289 4.289 10 C 0.115 3.885 11 N -0.091 5.091 12 C -0.436 4.436 13 H 0.132 0.868 14 C -0.178 4.178 15 N -0.495 5.495 16 Si 0.769 3.231 17 H -0.195 1.195 18 H -0.201 1.201 19 H -0.187 1.187 20 N -0.297 5.297 21 C 0.085 3.915 22 H 0.103 0.897 23 H 0.076 0.924 24 H 0.076 0.924 25 H 0.072 0.928 26 H 0.087 0.913 27 H 0.099 0.901 28 H 0.142 0.858 29 H 0.145 0.855 30 H 0.244 0.756 31 H 0.096 0.904 32 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -2.552 7.047 8.471 11.311 hybrid contribution 0.875 0.582 -1.212 1.604 sum -1.677 7.629 7.260 10.664 Atomic orbital electron populations 1.21480 0.78835 1.03713 1.01575 1.57460 1.14980 1.21946 1.90570 1.21485 0.97064 0.85328 1.01958 1.01065 0.72423 0.71811 0.74461 1.93495 1.66618 1.58434 1.78162 1.93481 1.40389 1.84705 1.78212 1.30181 1.10046 1.28826 1.26798 1.20487 0.92769 0.91875 0.92835 1.21087 1.02664 1.08967 0.96154 1.18369 0.90775 0.93396 0.85959 1.41209 1.20249 1.41636 1.06022 1.20026 0.98801 1.30842 0.93916 0.86832 1.25587 0.99610 0.95691 0.96953 1.69695 1.33494 1.31807 1.14525 0.85619 0.79478 0.79580 0.78428 1.19527 1.20131 1.18705 1.67101 1.23264 1.29911 1.09460 1.21632 0.94392 0.86962 0.88540 0.89655 0.92379 0.92438 0.92837 0.91281 0.90108 0.85809 0.85484 0.75626 0.90438 0.83481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.95 10.67 59.84 0.64 1.59 16 2 N -1.01 -13.13 3.58 -129.20 -0.46 -13.59 16 3 C 0.09 0.94 10.70 59.85 0.64 1.58 16 4 S 2.71 44.42 5.70 -107.50 -0.61 43.81 16 5 O -0.98 -17.66 15.86 -57.17 -0.91 -18.57 16 6 O -0.98 -17.91 15.96 -57.17 -0.91 -18.82 16 7 C -0.86 -15.93 5.99 -39.39 -0.24 -16.17 16 8 C 0.05 0.88 9.64 -39.32 -0.38 0.51 16 9 C -0.26 -5.54 9.33 -39.19 -0.37 -5.91 16 10 C 0.36 8.37 7.62 -155.07 -1.18 7.19 16 11 N -0.49 -11.92 5.44 -11.15 -0.06 -11.98 16 12 C -0.31 -7.28 9.54 -15.07 -0.14 -7.42 16 13 H 0.11 2.55 5.65 -52.49 -0.30 2.25 16 14 C 0.03 0.70 5.50 -17.45 -0.10 0.60 16 15 N -0.86 -21.23 13.05 55.49 0.72 -20.50 16 16 Si 0.94 17.91 29.55 -169.99 -5.02 12.89 16 17 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 18 H -0.28 -5.21 7.11 56.52 0.40 -4.81 16 19 H -0.26 -4.85 7.11 56.52 0.40 -4.45 16 20 N -0.58 -12.95 10.39 -12.43 -0.13 -13.08 16 21 C 0.26 5.09 10.68 -17.56 -0.19 4.90 16 22 H 0.08 0.94 6.91 -51.93 -0.36 0.58 16 23 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.07 0.57 8.07 -51.93 -0.42 0.15 16 27 H 0.08 0.89 7.02 -51.93 -0.36 0.53 16 28 H 0.12 2.06 7.70 -52.49 -0.40 1.65 16 29 H 0.13 2.56 5.94 -52.49 -0.31 2.24 16 30 H 0.41 10.12 8.01 -40.82 -0.33 9.79 16 31 H 0.29 6.53 8.31 -40.82 -0.34 6.19 16 32 H 0.15 2.49 7.62 -52.49 -0.40 2.09 16 LS Contribution 290.20 15.07 4.37 4.37 Total: -1.00 -29.16 290.20 -7.61 -36.77 By element: Atomic # 1 Polarization: 15.11 SS G_CDS: -3.28 Total: 11.82 kcal Atomic # 6 Polarization: -11.81 SS G_CDS: -1.31 Total: -13.12 kcal Atomic # 7 Polarization: -59.22 SS G_CDS: 0.07 Total: -59.15 kcal Atomic # 8 Polarization: -35.57 SS G_CDS: -1.82 Total: -37.39 kcal Atomic # 14 Polarization: 17.91 SS G_CDS: -5.02 Total: 12.89 kcal Atomic # 16 Polarization: 44.42 SS G_CDS: -0.61 Total: 43.81 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -29.16 -7.61 -36.77 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155534652.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.830 kcal (2) G-P(sol) polarization free energy of solvation -29.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds