Wall clock time and date at job start Mon Mar 30 2020 00:50:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46502 * 119.99921 * 2 1 4 4 S 1.65599 * 120.00040 * 179.97438 * 2 1 3 5 5 O 1.42100 * 106.40559 * 336.46516 * 4 2 1 6 6 O 1.42101 * 106.40178 * 203.54044 * 4 2 1 7 7 C 1.76205 * 107.21646 * 90.00415 * 4 2 1 8 8 C 1.38874 * 120.33168 * 89.99849 * 7 4 2 9 9 C 1.38315 * 118.50800 * 180.02562 * 8 7 4 10 10 C 1.39228 * 119.08864 * 359.97438 * 9 8 7 11 11 N 1.38832 * 119.71083 * 179.97438 * 10 9 8 12 12 C 1.36914 * 120.00211 * 0.02562 * 11 10 9 13 13 H 1.08001 * 119.99806 * 359.97438 * 12 11 10 14 14 C 1.38812 * 119.99801 * 179.97438 * 12 11 10 15 15 N 1.31563 * 120.00532 * 359.97438 * 14 12 11 16 16 Si 1.86805 * 119.99930 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.47459 * 89.99350 * 16 14 12 18 18 H 1.48495 * 109.47485 * 210.00086 * 16 14 12 19 19 H 1.48505 * 109.46888 * 329.99815 * 16 14 12 20 20 N 1.32496 * 120.57661 * 359.97438 * 10 9 8 21 21 C 1.31898 * 121.61982 * 359.97438 * 20 10 9 22 22 H 1.09007 * 109.47210 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.47617 * 300.00181 * 1 2 3 24 24 H 1.09002 * 109.47221 * 60.00771 * 1 2 3 25 25 H 1.08999 * 109.46818 * 269.99508 * 3 2 1 26 26 H 1.08995 * 109.47008 * 29.99359 * 3 2 1 27 27 H 1.08998 * 109.47347 * 150.00296 * 3 2 1 28 28 H 1.08001 * 120.74845 * 0.02562 * 8 7 4 29 29 H 1.07998 * 120.45711 * 179.72765 * 9 8 7 30 30 H 0.97000 * 119.99780 * 179.97438 * 11 10 9 31 31 H 0.97002 * 120.00446 * 180.02562 * 15 14 12 32 32 H 1.07996 * 119.56307 * 180.02562 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 16 2.2930 -1.4341 0.0006 5 8 1.4113 -2.4063 0.5454 6 8 3.5759 -1.1565 0.5450 7 6 2.5538 -1.8865 -1.6823 8 6 3.6957 -1.4672 -2.3523 9 6 3.8620 -1.8436 -3.6728 10 6 2.8847 -2.6262 -4.2817 11 7 3.0382 -3.0110 -5.6068 12 6 4.1473 -2.6214 -6.3087 13 1 4.9025 -2.0144 -5.8317 14 6 4.3010 -3.0067 -7.6334 15 7 3.3812 -3.7466 -8.2144 16 14 5.8138 -2.4745 -8.5914 17 1 6.8844 -3.4910 -8.4308 18 1 5.4681 -2.3426 -10.0295 19 1 6.2918 -1.1667 -8.0753 20 7 1.8094 -3.0069 -3.6077 21 6 1.6256 -2.6634 -2.3476 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5137 -0.8901 25 1 2.3792 1.5833 -1.0277 26 1 1.6083 2.0284 0.5137 27 1 3.1499 1.1385 0.5138 28 1 4.4373 -0.8607 -1.8535 29 1 4.7360 -1.5315 -4.2251 30 1 2.3601 -3.5566 -6.0351 31 1 3.4888 -4.0161 -9.1400 32 1 0.7369 -2.9925 -1.8297 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155534652.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:43 Heat of formation + Delta-G solvation = -53.896144 kcal Electronic energy + Delta-G solvation = -18537.741126 eV Core-core repulsion = 15431.623716 eV Total energy + Delta-G solvation = -3106.117410 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.078 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.83594 -38.22019 -37.35562 -36.95637 -36.72560 -34.12310 -33.13854 -30.51073 -28.85181 -27.13187 -25.42477 -24.45964 -23.56010 -20.16298 -19.77385 -18.94909 -18.54915 -18.07670 -17.38806 -16.76567 -16.43832 -15.51776 -15.42773 -15.27558 -15.19006 -15.11288 -14.17254 -13.86327 -13.81692 -13.50629 -13.45842 -13.23150 -13.15880 -13.02421 -12.67169 -12.47708 -12.45894 -12.28673 -12.13596 -11.79904 -11.01443 -10.65687 -10.29815 -9.86724 -9.18358 -8.73786 -6.02436 -0.39172 0.18224 0.67044 1.39624 1.44719 1.53625 2.12070 2.18693 2.67121 2.86250 2.95410 3.24280 3.47680 3.80459 4.02731 4.10483 4.43839 4.58763 4.66609 4.67863 4.86206 4.93227 5.03502 5.05700 5.06907 5.14799 5.15275 5.30395 5.57360 5.72920 6.00634 6.45046 6.87592 7.12507 7.56345 8.42620 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.036206 B = 0.004460 C = 0.004298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.159837 B = 6277.152296 C = 6512.353271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -1.007 6.007 3 C 0.077 3.923 4 S 2.733 3.267 5 O -0.991 6.991 6 O -0.992 6.992 7 C -0.850 4.850 8 C 0.053 3.947 9 C -0.281 4.281 10 C 0.355 3.645 11 N -0.521 5.521 12 C -0.329 4.329 13 H 0.121 0.879 14 C -0.015 4.015 15 N -0.907 5.907 16 Si 1.011 2.989 17 H -0.269 1.269 18 H -0.276 1.276 19 H -0.253 1.253 20 N -0.602 5.602 21 C 0.247 3.753 22 H 0.079 0.921 23 H 0.084 0.916 24 H 0.071 0.929 25 H 0.059 0.941 26 H 0.100 0.900 27 H 0.077 0.923 28 H 0.154 0.846 29 H 0.134 0.866 30 H 0.396 0.604 31 H 0.286 0.714 32 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.249 10.009 10.808 14.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.847 5.847 3 C -0.068 4.068 4 S 2.825 3.175 5 O -0.981 6.981 6 O -0.983 6.983 7 C -0.948 4.948 8 C 0.028 3.972 9 C -0.308 4.308 10 C 0.111 3.889 11 N -0.121 5.121 12 C -0.459 4.459 13 H 0.138 0.862 14 C -0.218 4.218 15 N -0.542 5.542 16 Si 0.832 3.168 17 H -0.194 1.194 18 H -0.201 1.201 19 H -0.176 1.176 20 N -0.323 5.323 21 C 0.077 3.923 22 H 0.098 0.902 23 H 0.103 0.897 24 H 0.090 0.910 25 H 0.078 0.922 26 H 0.119 0.881 27 H 0.096 0.904 28 H 0.171 0.829 29 H 0.152 0.848 30 H 0.231 0.769 31 H 0.095 0.905 32 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -2.396 8.996 10.510 14.040 hybrid contribution 0.662 0.102 -1.406 1.557 sum -1.733 9.098 9.104 12.987 Atomic orbital electron populations 1.21766 0.77101 1.04072 1.03678 1.57192 1.16056 1.21399 1.90043 1.21759 0.97364 0.84747 1.02892 1.00373 0.71987 0.72177 0.72976 1.93478 1.66851 1.59973 1.77820 1.93464 1.41769 1.85140 1.77883 1.30801 1.09067 1.26863 1.28082 1.20898 0.93258 0.91007 0.92061 1.21280 1.02785 1.09442 0.97278 1.18791 0.91217 0.92943 0.85942 1.41223 1.20749 1.43583 1.06534 1.20322 0.99220 1.31773 0.94568 0.86156 1.26494 1.02216 0.95544 0.97511 1.69793 1.35563 1.33986 1.14854 0.84639 0.75890 0.79416 0.76811 1.19370 1.20088 1.17627 1.67137 1.23582 1.30788 1.10808 1.22172 0.95552 0.86671 0.87915 0.90217 0.89717 0.91011 0.92234 0.88123 0.90435 0.82880 0.84847 0.76917 0.90452 0.80939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.38 10.67 127.77 1.36 2.74 16 2 N -1.01 -22.44 3.58 -562.69 -2.02 -24.45 16 3 C 0.08 1.35 10.70 127.77 1.37 2.71 16 4 S 2.73 81.88 5.70 -56.49 -0.32 81.56 16 5 O -0.99 -33.26 15.86 -128.00 -2.03 -35.29 16 6 O -0.99 -33.44 15.96 -128.00 -2.04 -35.49 16 7 C -0.85 -29.84 5.99 22.40 0.13 -29.70 16 8 C 0.05 1.94 9.64 22.44 0.22 2.15 16 9 C -0.28 -11.76 9.33 22.53 0.21 -11.55 16 10 C 0.36 16.72 7.62 133.12 1.01 17.74 16 11 N -0.52 -26.18 5.44 -189.20 -1.03 -27.21 16 12 C -0.33 -16.18 9.54 84.04 0.80 -15.38 16 13 H 0.12 5.50 5.65 -2.91 -0.02 5.48 16 14 C -0.01 -0.70 5.50 84.87 0.47 -0.23 16 15 N -0.91 -46.55 13.05 21.65 0.28 -46.27 16 16 Si 1.01 37.20 29.55 68.60 2.03 39.22 16 17 H -0.27 -9.69 7.11 99.48 0.71 -8.98 16 18 H -0.28 -9.98 7.11 99.48 0.71 -9.27 16 19 H -0.25 -8.73 7.11 99.48 0.71 -8.02 16 20 N -0.60 -27.13 10.39 -193.23 -2.01 -29.14 16 21 C 0.25 9.43 10.68 84.66 0.90 10.34 16 22 H 0.08 1.51 6.91 -2.38 -0.02 1.49 16 23 H 0.08 1.08 8.14 -2.38 -0.02 1.06 16 24 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 25 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.10 1.17 8.07 -2.39 -0.02 1.15 16 27 H 0.08 1.43 7.02 -2.39 -0.02 1.42 16 28 H 0.15 4.61 7.70 -2.91 -0.02 4.59 16 29 H 0.13 5.33 5.94 -2.91 -0.02 5.32 16 30 H 0.40 20.87 8.01 -92.71 -0.74 20.13 16 31 H 0.29 13.64 8.31 -92.71 -0.77 12.87 16 32 H 0.17 5.54 7.62 -2.91 -0.02 5.51 16 Total: -1.00 -63.24 290.20 -0.24 -63.48 By element: Atomic # 1 Polarization: 34.34 SS G_CDS: 0.42 Total: 34.76 kcal Atomic # 6 Polarization: -27.66 SS G_CDS: 6.48 Total: -21.18 kcal Atomic # 7 Polarization: -122.30 SS G_CDS: -4.77 Total: -127.07 kcal Atomic # 8 Polarization: -66.70 SS G_CDS: -4.07 Total: -70.77 kcal Atomic # 14 Polarization: 37.20 SS G_CDS: 2.03 Total: 39.22 kcal Atomic # 16 Polarization: 81.88 SS G_CDS: -0.32 Total: 81.56 kcal Total: -63.24 -0.24 -63.48 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155534652.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.582 kcal (2) G-P(sol) polarization free energy of solvation -63.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds