Wall clock time and date at job start Mon Mar 30 2020 01:30:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35785 * 116.99505 * 2 1 4 4 C 1.39392 * 120.05100 * 180.02562 * 3 2 1 5 5 C 1.38419 * 117.97593 * 180.02562 * 4 3 2 6 6 C 1.39538 * 117.95308 * 359.97438 * 5 4 3 7 7 N 1.39415 * 120.09346 * 179.97438 * 6 5 4 8 8 C 1.38339 * 119.99728 * 353.79461 * 7 6 5 9 9 C 1.38988 * 119.99860 * 299.82066 * 8 7 6 10 10 H 1.08000 * 119.99711 * 158.87943 * 9 8 7 11 11 C 1.40833 * 120.00361 * 338.88113 * 9 8 7 12 12 N 1.30338 * 119.99849 * 350.89080 * 11 9 8 13 13 Si 1.86803 * 120.00236 * 170.88528 * 11 9 8 14 14 H 1.48493 * 109.46995 * 90.00120 * 13 11 9 15 15 H 1.48505 * 109.47231 * 210.00406 * 13 11 9 16 16 H 1.48501 * 109.47059 * 330.00086 * 13 11 9 17 17 C 1.41153 * 120.00247 * 119.82434 * 8 7 6 18 18 C 1.43196 * 120.00016 * 185.26430 * 17 8 7 19 19 N 9.14883 * 139.36416 * 352.81293 * 2 1 3 20 20 C 1.43205 * 119.99684 * 5.26816 * 17 8 7 21 21 N 8.02627 * 113.09360 * 336.93844 * 2 1 3 22 22 N 1.32320 * 119.81746 * 0.02562 * 6 5 4 23 23 N 1.28347 * 122.15518 * 359.97438 * 22 6 5 24 24 H 1.09000 * 109.47074 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47174 * 299.99911 * 1 2 3 26 26 H 1.08997 * 109.47603 * 59.99870 * 1 2 3 27 27 H 1.08000 * 121.01185 * 0.26820 * 4 3 2 28 28 H 1.08009 * 121.02051 * 180.02562 * 5 4 3 29 29 H 0.97001 * 120.00236 * 173.79123 * 7 6 5 30 30 H 0.97003 * 120.00184 * 185.04875 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2099 0.0000 4 6 3.4373 1.2842 -0.0005 5 6 4.0205 2.5395 0.0000 6 6 3.1783 3.6521 0.0006 7 7 3.7181 4.9375 0.0017 8 6 5.0840 5.1139 0.1318 9 6 5.7392 4.6523 1.2672 10 1 6.8038 4.4721 1.2406 11 6 5.0151 4.4195 2.4525 12 7 3.7722 4.8014 2.5425 13 14 5.8359 3.5633 3.8957 14 1 6.4706 4.5764 4.7765 15 1 4.8173 2.8057 4.6663 16 1 6.8723 2.6269 3.3914 17 6 5.8122 5.7628 -0.8886 18 6 7.2394 5.8458 -0.8076 19 7 8.3717 5.9114 -0.7454 20 6 5.1236 6.3381 -2.0046 21 7 4.5771 6.7931 -2.8921 22 7 1.8658 3.4837 0.0010 23 7 1.3265 2.3190 0.0005 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 4.0422 0.3896 -0.0053 28 1 5.0945 2.6543 -0.0008 29 1 3.1359 5.7081 -0.0888 30 1 3.2956 4.7078 3.3822 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001158210434.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:46 Heat of formation + Delta-G solvation = 85.121599 kcal Electronic energy + Delta-G solvation = -19606.417412 eV Core-core repulsion = 16403.177063 eV Total energy + Delta-G solvation = -3203.240349 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.081 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.71731 -38.47361 -37.28319 -35.37689 -34.79835 -33.76489 -32.53928 -31.39573 -28.91454 -27.38915 -27.15063 -23.81326 -23.36522 -21.44087 -19.20145 -18.37577 -17.64262 -17.42311 -16.44297 -16.34057 -15.88001 -15.25753 -14.31256 -14.05483 -13.78413 -13.72076 -13.14472 -12.87017 -12.69386 -12.39723 -11.94144 -11.86064 -11.81652 -11.75366 -11.63130 -11.50046 -11.24300 -11.11058 -10.98132 -10.80228 -10.23761 -10.17184 -9.51533 -9.07883 -8.39106 -7.88016 -7.03633 -5.58693 1.27044 1.59120 2.14429 2.61476 2.68955 2.75284 3.22203 3.28965 3.64031 3.79236 3.97893 4.06489 4.17192 4.26213 4.74414 5.01542 5.07290 5.18996 5.32058 5.39777 5.51151 5.52266 5.66768 5.86764 6.09177 6.12892 6.25983 6.48427 6.89335 7.07145 7.38268 7.50076 7.61346 8.06587 8.27950 8.87242 9.02941 9.07950 9.32417 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.015145 B = 0.007534 C = 0.005762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.326299 B = 3715.666877 C = 4858.380357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.312 6.312 3 C 0.195 3.805 4 C -0.105 4.105 5 C -0.127 4.127 6 C 0.363 3.637 7 N -0.630 5.630 8 C 0.380 3.620 9 C -0.381 4.381 10 H 0.115 0.885 11 C 0.066 3.934 12 N -0.712 5.712 13 Si 0.922 3.078 14 H -0.255 1.255 15 H -0.267 1.267 16 H -0.246 1.246 17 C -0.306 4.306 18 C 0.325 3.675 19 N -0.529 5.529 20 C 0.307 3.693 21 N -0.528 5.528 22 N -0.278 5.278 23 N -0.268 5.268 24 H 0.091 0.909 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.148 0.852 28 H 0.163 0.837 29 H 0.411 0.589 30 H 0.304 0.696 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.703 -9.489 5.177 11.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.217 6.217 3 C 0.005 3.995 4 C -0.134 4.134 5 C -0.160 4.160 6 C 0.120 3.880 7 N -0.256 5.256 8 C 0.275 3.725 9 C -0.409 4.409 10 H 0.133 0.867 11 C -0.166 4.166 12 N -0.331 5.331 13 Si 0.742 3.258 14 H -0.179 1.179 15 H -0.191 1.191 16 H -0.169 1.169 17 C -0.324 4.324 18 C 0.016 3.984 19 N -0.211 5.211 20 C -0.001 4.001 21 N -0.210 5.210 22 N -0.130 5.130 23 N -0.122 5.122 24 H 0.110 0.890 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.166 0.834 28 H 0.180 0.820 29 H 0.248 0.752 30 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -5.351 -8.352 4.024 10.704 hybrid contribution 0.854 -0.679 1.137 1.575 sum -4.497 -9.031 5.161 11.332 Atomic orbital electron populations 1.22809 0.77870 1.02469 1.02391 1.86162 1.22246 1.23952 1.89382 1.21130 0.90811 0.86751 1.00858 1.21265 0.91980 0.99028 1.01108 1.22064 1.02852 0.90450 1.00633 1.19542 0.90408 0.86590 0.91464 1.40988 1.05723 1.03831 1.75089 1.16726 0.79473 0.87280 0.89024 1.20372 0.97898 1.30395 0.92186 0.86693 1.26537 0.94436 0.93562 1.02021 1.69508 1.09040 1.25562 1.28942 0.85967 0.80430 0.80434 0.78924 1.17933 1.19089 1.16852 1.12884 0.83715 1.34587 1.01220 1.24628 0.91234 0.90825 0.91665 1.81074 1.12245 1.16620 1.11130 1.25205 0.92562 0.90924 0.91388 1.81141 1.09633 1.17226 1.12961 1.72620 1.08818 1.13185 1.18352 1.72676 1.31393 0.93848 1.14274 0.89018 0.92515 0.92479 0.83375 0.81961 0.75160 0.88330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.46 10.40 101.05 1.05 1.51 16 2 O -0.31 -4.60 10.49 -19.07 -0.20 -4.80 16 3 C 0.19 3.26 7.57 -16.98 -0.13 3.13 16 4 C -0.10 -1.61 10.15 -39.09 -0.40 -2.01 16 5 C -0.13 -2.14 8.67 -39.03 -0.34 -2.48 16 6 C 0.36 6.82 6.25 -154.53 -0.97 5.85 16 7 N -0.63 -11.96 3.34 -9.59 -0.03 -11.99 16 8 C 0.38 7.34 4.99 -83.54 -0.42 6.92 16 9 C -0.38 -7.09 6.90 -38.32 -0.26 -7.36 16 10 H 0.12 2.14 7.01 -52.49 -0.37 1.77 16 11 C 0.07 1.18 4.78 -17.20 -0.08 1.09 16 12 N -0.71 -13.16 11.00 55.60 0.61 -12.54 16 13 Si 0.92 13.90 29.58 -169.99 -5.03 8.87 16 14 H -0.26 -3.91 7.11 56.52 0.40 -3.51 16 15 H -0.27 -4.06 7.11 56.52 0.40 -3.66 16 16 H -0.25 -3.67 7.11 56.52 0.40 -3.27 16 17 C -0.31 -6.29 5.88 -104.94 -0.62 -6.91 16 18 C 0.32 6.98 13.90 -22.48 -0.31 6.66 16 19 N -0.53 -11.88 18.54 41.83 0.78 -11.11 16 20 C 0.31 6.70 14.81 -22.43 -0.33 6.36 16 21 N -0.53 -12.17 18.55 41.88 0.78 -11.39 16 22 N -0.28 -5.48 11.52 31.29 0.36 -5.12 16 23 N -0.27 -4.98 10.39 30.52 0.32 -4.66 16 24 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 25 H 0.06 0.66 8.11 -51.93 -0.42 0.24 16 26 H 0.06 0.66 8.11 -51.93 -0.42 0.24 16 27 H 0.15 1.79 8.06 -52.49 -0.42 1.37 16 28 H 0.16 2.60 6.29 -52.48 -0.33 2.27 16 29 H 0.41 7.85 8.92 -40.82 -0.36 7.49 16 30 H 0.30 5.24 8.29 -40.82 -0.34 4.90 16 LS Contribution 291.97 15.07 4.40 4.40 Total: -1.00 -24.68 291.97 -2.71 -27.38 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -1.88 Total: 8.17 kcal Atomic # 6 Polarization: 15.59 SS G_CDS: -2.80 Total: 12.78 kcal Atomic # 7 Polarization: -59.62 SS G_CDS: 2.81 Total: -56.81 kcal Atomic # 8 Polarization: -4.60 SS G_CDS: -0.20 Total: -4.80 kcal Atomic # 14 Polarization: 13.90 SS G_CDS: -5.03 Total: 8.87 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -24.68 -2.71 -27.38 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158210434.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.505 kcal (2) G-P(sol) polarization free energy of solvation -24.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.384 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds