Wall clock time and date at job start Mon Mar 30 2020 01:30:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35785 * 116.99505 * 2 1 4 4 C 1.39392 * 120.05100 * 180.02562 * 3 2 1 5 5 C 1.38419 * 117.97593 * 180.02562 * 4 3 2 6 6 C 1.39538 * 117.95308 * 359.97438 * 5 4 3 7 7 N 1.39415 * 120.09346 * 179.97438 * 6 5 4 8 8 C 1.38339 * 119.99728 * 353.79461 * 7 6 5 9 9 C 1.38988 * 119.99860 * 299.82066 * 8 7 6 10 10 H 1.08000 * 119.99711 * 158.87943 * 9 8 7 11 11 C 1.40833 * 120.00361 * 338.88113 * 9 8 7 12 12 N 1.30338 * 119.99849 * 350.89080 * 11 9 8 13 13 Si 1.86803 * 120.00236 * 170.88528 * 11 9 8 14 14 H 1.48493 * 109.46995 * 90.00120 * 13 11 9 15 15 H 1.48505 * 109.47231 * 210.00406 * 13 11 9 16 16 H 1.48501 * 109.47059 * 330.00086 * 13 11 9 17 17 C 1.41153 * 120.00247 * 119.82434 * 8 7 6 18 18 C 1.43196 * 120.00016 * 185.26430 * 17 8 7 19 19 N 9.14883 * 139.36416 * 352.81293 * 2 1 3 20 20 C 1.43205 * 119.99684 * 5.26816 * 17 8 7 21 21 N 8.02627 * 113.09360 * 336.93844 * 2 1 3 22 22 N 1.32320 * 119.81746 * 0.02562 * 6 5 4 23 23 N 1.28347 * 122.15518 * 359.97438 * 22 6 5 24 24 H 1.09000 * 109.47074 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47174 * 299.99911 * 1 2 3 26 26 H 1.08997 * 109.47603 * 59.99870 * 1 2 3 27 27 H 1.08000 * 121.01185 * 0.26820 * 4 3 2 28 28 H 1.08009 * 121.02051 * 180.02562 * 5 4 3 29 29 H 0.97001 * 120.00236 * 173.79123 * 7 6 5 30 30 H 0.97003 * 120.00184 * 185.04875 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2099 0.0000 4 6 3.4373 1.2842 -0.0005 5 6 4.0205 2.5395 0.0000 6 6 3.1783 3.6521 0.0006 7 7 3.7181 4.9375 0.0017 8 6 5.0840 5.1139 0.1318 9 6 5.7392 4.6523 1.2672 10 1 6.8038 4.4721 1.2406 11 6 5.0151 4.4195 2.4525 12 7 3.7722 4.8014 2.5425 13 14 5.8359 3.5633 3.8957 14 1 6.4706 4.5764 4.7765 15 1 4.8173 2.8057 4.6663 16 1 6.8723 2.6269 3.3914 17 6 5.8122 5.7628 -0.8886 18 6 7.2394 5.8458 -0.8076 19 7 8.3717 5.9114 -0.7454 20 6 5.1236 6.3381 -2.0046 21 7 4.5771 6.7931 -2.8921 22 7 1.8658 3.4837 0.0010 23 7 1.3265 2.3190 0.0005 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 4.0422 0.3896 -0.0053 28 1 5.0945 2.6543 -0.0008 29 1 3.1359 5.7081 -0.0888 30 1 3.2956 4.7078 3.3822 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158210434.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:46 Heat of formation + Delta-G solvation = 69.897865 kcal Electronic energy + Delta-G solvation = -19607.077563 eV Core-core repulsion = 16403.177063 eV Total energy + Delta-G solvation = -3203.900500 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.081 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.04927 -39.77520 -38.66947 -37.02750 -36.52198 -35.20895 -33.84222 -32.87511 -30.30946 -28.88447 -28.27681 -25.10957 -24.72039 -22.91092 -20.76812 -19.65138 -19.00814 -18.89941 -17.82043 -17.74843 -17.07145 -16.68026 -15.48088 -15.31370 -15.08633 -15.03062 -14.55573 -14.40171 -14.32291 -13.88081 -13.47624 -13.38300 -13.30670 -13.18262 -12.84044 -12.81015 -12.74960 -12.53963 -12.47730 -12.07162 -11.60038 -11.53718 -10.78841 -10.41860 -9.88419 -9.27766 -8.48421 -7.16864 -0.03822 0.20864 0.74561 1.37288 1.51316 1.54881 1.96636 2.04617 2.08475 2.24513 2.29399 2.56628 2.63430 2.81573 3.39604 3.46849 3.76636 3.79601 4.00338 4.18730 4.47159 4.50831 4.53479 4.65000 4.66196 4.80557 4.92210 5.17760 5.37299 5.58790 5.99342 6.10479 6.21010 6.59051 6.78164 7.18951 7.35073 7.67544 7.95472 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.015145 B = 0.007534 C = 0.005762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.326299 B = 3715.666877 C = 4858.380357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.312 6.312 3 C 0.195 3.805 4 C -0.093 4.093 5 C -0.134 4.134 6 C 0.351 3.649 7 N -0.633 5.633 8 C 0.377 3.623 9 C -0.368 4.368 10 H 0.118 0.882 11 C 0.045 3.955 12 N -0.723 5.723 13 Si 0.974 3.026 14 H -0.257 1.257 15 H -0.266 1.266 16 H -0.239 1.239 17 C -0.318 4.318 18 C 0.332 3.668 19 N -0.551 5.551 20 C 0.315 3.685 21 N -0.559 5.559 22 N -0.306 5.306 23 N -0.289 5.289 24 H 0.129 0.871 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.186 0.814 28 H 0.171 0.829 29 H 0.406 0.594 30 H 0.311 0.689 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.503 -11.497 6.522 13.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.218 6.218 3 C 0.003 3.997 4 C -0.122 4.122 5 C -0.166 4.166 6 C 0.108 3.892 7 N -0.259 5.259 8 C 0.272 3.728 9 C -0.395 4.395 10 H 0.136 0.864 11 C -0.187 4.187 12 N -0.341 5.341 13 Si 0.793 3.207 14 H -0.181 1.181 15 H -0.190 1.190 16 H -0.161 1.161 17 C -0.337 4.337 18 C 0.025 3.975 19 N -0.234 5.234 20 C 0.009 3.991 21 N -0.242 5.242 22 N -0.156 5.156 23 N -0.142 5.142 24 H 0.147 0.853 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.203 0.797 28 H 0.188 0.812 29 H 0.243 0.757 30 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -5.179 -10.370 5.354 12.768 hybrid contribution 0.666 -0.179 0.819 1.071 sum -4.512 -10.549 6.173 13.029 Atomic orbital electron populations 1.23081 0.76171 1.04837 1.01954 1.86181 1.23916 1.22683 1.88973 1.21416 0.91593 0.86968 0.99693 1.21657 0.91809 0.99746 0.98960 1.22212 1.03085 0.90531 1.00813 1.19690 0.90624 0.86856 0.92001 1.40936 1.05426 1.03971 1.75566 1.16706 0.79653 0.87508 0.88966 1.20583 0.98089 1.28740 0.92122 0.86405 1.27111 0.94596 0.93628 1.03322 1.69535 1.09803 1.24978 1.29778 0.85190 0.79665 0.79525 0.76330 1.18101 1.19041 1.16130 1.12889 0.83363 1.35861 1.01571 1.24700 0.91272 0.90346 0.91169 1.81069 1.12697 1.17742 1.11885 1.25395 0.92071 0.90438 0.91226 1.81129 1.10459 1.18658 1.13957 1.72545 1.09466 1.14066 1.19561 1.72590 1.32008 0.94156 1.15444 0.85270 0.92951 0.92936 0.79685 0.81182 0.75741 0.87649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.72 10.40 113.37 1.18 1.89 16 2 O -0.31 -8.43 10.49 -91.14 -0.96 -9.38 16 3 C 0.19 6.14 7.57 84.92 0.64 6.79 16 4 C -0.09 -2.62 10.15 22.59 0.23 -2.39 16 5 C -0.13 -4.30 8.67 22.63 0.20 -4.10 16 6 C 0.35 13.02 6.25 133.04 0.83 13.85 16 7 N -0.63 -23.98 3.34 -184.24 -0.62 -24.59 16 8 C 0.38 14.35 4.99 39.01 0.19 14.54 16 9 C -0.37 -13.17 6.90 23.09 0.16 -13.01 16 10 H 0.12 4.16 7.01 -2.91 -0.02 4.14 16 11 C 0.04 1.49 4.78 85.55 0.41 1.90 16 12 N -0.72 -25.75 11.00 21.98 0.24 -25.51 16 13 Si 0.97 26.22 29.58 68.60 2.03 28.25 16 14 H -0.26 -7.02 7.11 99.48 0.71 -6.31 16 15 H -0.27 -7.16 7.11 99.48 0.71 -6.45 16 16 H -0.24 -6.18 7.11 99.48 0.71 -5.48 16 17 C -0.32 -13.04 5.88 -20.07 -0.12 -13.16 16 18 C 0.33 14.14 13.90 88.33 1.23 15.37 16 19 N -0.55 -24.47 18.54 19.00 0.35 -24.12 16 20 C 0.31 13.87 14.81 88.32 1.31 15.18 16 21 N -0.56 -26.13 18.55 19.02 0.35 -25.78 16 22 N -0.31 -12.00 11.52 -54.92 -0.63 -12.63 16 23 N -0.29 -10.51 10.39 -170.22 -1.77 -12.28 16 24 H 0.13 1.70 8.14 -2.39 -0.02 1.68 16 25 H 0.05 1.14 8.11 -2.39 -0.02 1.12 16 26 H 0.05 1.15 8.11 -2.39 -0.02 1.13 16 27 H 0.19 3.73 8.06 -2.91 -0.02 3.70 16 28 H 0.17 5.12 6.29 -2.91 -0.02 5.10 16 29 H 0.41 15.80 8.92 -92.71 -0.83 14.98 16 30 H 0.31 10.24 8.29 -92.71 -0.77 9.48 16 Total: -1.00 -51.74 291.97 5.67 -46.08 By element: Atomic # 1 Polarization: 22.69 SS G_CDS: 0.40 Total: 23.10 kcal Atomic # 6 Polarization: 30.60 SS G_CDS: 6.26 Total: 36.86 kcal Atomic # 7 Polarization: -122.83 SS G_CDS: -2.07 Total: -124.90 kcal Atomic # 8 Polarization: -8.43 SS G_CDS: -0.96 Total: -9.38 kcal Atomic # 14 Polarization: 26.22 SS G_CDS: 2.03 Total: 28.25 kcal Total: -51.74 5.67 -46.08 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158210434.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.974 kcal (2) G-P(sol) polarization free energy of solvation -51.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.076 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds