Wall clock time and date at job start Mon Mar 30 2020 01:30:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35510 * 116.99921 * 2 1 4 4 C 1.39447 * 120.46537 * 179.97438 * 3 2 1 5 5 C 1.38216 * 118.49588 * 179.70683 * 4 3 2 6 6 N 1.32450 * 119.26506 * 0.27329 * 5 4 3 7 7 C 1.32442 * 120.89315 * 0.02562 * 6 5 4 8 8 N 1.38626 * 119.18293 * 180.02562 * 7 6 5 9 9 C 1.38480 * 120.00120 * 356.82696 * 8 7 6 10 10 C 1.38936 * 119.99680 * 299.69246 * 9 8 7 11 11 H 1.08002 * 119.99520 * 149.49231 * 10 9 8 12 12 C 1.40868 * 120.00096 * 329.48642 * 10 9 8 13 13 N 1.30321 * 119.99903 * 3.36179 * 12 10 9 14 14 Si 1.86794 * 120.00009 * 183.35472 * 12 10 9 15 15 H 1.48510 * 109.47016 * 90.00139 * 14 12 10 16 16 H 1.48501 * 109.47563 * 209.99967 * 14 12 10 17 17 H 1.48499 * 109.47554 * 330.00603 * 14 12 10 18 18 C 1.41125 * 119.99992 * 119.68969 * 9 8 7 19 19 C 1.43199 * 119.99505 * 185.13525 * 18 9 8 20 20 N 9.21961 * 98.84242 * 353.85403 * 2 1 3 21 21 C 1.43200 * 120.00118 * 5.12995 * 18 9 8 22 22 N 7.08677 * 77.90573 * 335.23598 * 2 1 3 23 23 N 1.32470 * 121.63088 * 359.97438 * 7 6 5 24 24 H 1.08998 * 109.46684 * 60.00294 * 1 2 3 25 25 H 1.09001 * 109.47065 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47374 * 300.00169 * 1 2 3 27 27 H 1.07998 * 120.75170 * 359.97438 * 4 3 2 28 28 H 1.08006 * 120.36072 * 180.25578 * 5 4 3 29 29 H 0.97000 * 119.99894 * 176.82605 * 8 7 6 30 30 H 0.96997 * 119.99713 * 185.00826 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0442 1.2074 0.0000 4 6 3.4362 1.2917 0.0005 5 6 4.0209 2.5441 -0.0057 6 7 3.2479 3.6196 -0.0064 7 6 1.9282 3.5085 -0.0008 8 7 1.1531 4.6579 -0.0023 9 6 1.7590 5.9017 0.0567 10 6 2.5544 6.2359 1.1457 11 1 3.3847 6.9150 1.0197 12 6 2.2779 5.6891 2.4141 13 7 1.3172 4.8196 2.5535 14 14 3.2882 6.2102 3.8963 15 1 2.6518 7.3876 4.5400 16 1 3.3546 5.0900 4.8689 17 1 4.6615 6.5676 3.4585 18 6 1.5685 6.8297 -0.9893 19 6 2.2811 8.0718 -0.9830 20 7 2.8463 9.0577 -0.9753 21 6 0.6628 6.5292 -2.0570 22 7 -0.0558 6.2922 -2.9026 23 7 1.3305 2.3263 0.0053 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 4.0435 0.3987 0.0014 28 1 5.0963 2.6444 -0.0096 29 1 0.1864 4.5908 -0.0448 30 1 1.0788 4.4977 3.4369 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001158210661.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:54 Heat of formation + Delta-G solvation = 81.254805 kcal Electronic energy + Delta-G solvation = -19685.243452 eV Core-core repulsion = 16481.835426 eV Total energy + Delta-G solvation = -3203.408026 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.081 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.65209 -38.43833 -37.08243 -35.22421 -34.72174 -33.66849 -32.61912 -31.20200 -29.28690 -27.23263 -27.06673 -23.47155 -23.29386 -21.32010 -19.29558 -18.02495 -17.90111 -17.07277 -16.27362 -15.85849 -15.62141 -15.12243 -14.87946 -14.30919 -13.98797 -13.58099 -13.28070 -12.81906 -12.58640 -12.26827 -11.91503 -11.84117 -11.69385 -11.61356 -11.54441 -11.39392 -11.02409 -10.94105 -10.70487 -10.37461 -10.18845 -10.00794 -9.34355 -8.71340 -8.24667 -7.75477 -7.13576 -5.36831 1.62364 1.75836 2.24702 2.72844 2.79741 2.85673 3.16917 3.43437 3.54961 3.87232 4.06812 4.26413 4.30916 4.51500 4.68634 5.19210 5.27214 5.29158 5.41456 5.42296 5.59290 5.72064 5.73054 5.89637 6.26973 6.31879 6.54565 7.09218 7.23424 7.26142 7.55791 7.67655 7.82371 8.08245 8.27052 8.93146 9.00904 9.14667 9.27578 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.014155 B = 0.008101 C = 0.006072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1977.570300 B = 3455.698367 C = 4610.447102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.309 6.309 3 C 0.394 3.606 4 C -0.322 4.322 5 C 0.210 3.790 6 N -0.557 5.557 7 C 0.639 3.361 8 N -0.611 5.611 9 C 0.396 3.604 10 C -0.355 4.355 11 H 0.112 0.888 12 C 0.072 3.928 13 N -0.738 5.738 14 Si 0.931 3.069 15 H -0.258 1.258 16 H -0.270 1.270 17 H -0.248 1.248 18 C -0.304 4.304 19 C 0.328 3.672 20 N -0.531 5.531 21 C 0.309 3.691 22 N -0.533 5.533 23 N -0.622 5.622 24 H 0.059 0.941 25 H 0.092 0.908 26 H 0.061 0.939 27 H 0.139 0.861 28 H 0.167 0.833 29 H 0.410 0.590 30 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.000 -10.795 5.265 12.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.213 6.213 3 C 0.205 3.795 4 C -0.349 4.349 5 C 0.043 3.957 6 N -0.282 5.282 7 C 0.283 3.717 8 N -0.237 5.237 9 C 0.292 3.708 10 C -0.384 4.384 11 H 0.130 0.870 12 C -0.157 4.157 13 N -0.358 5.358 14 Si 0.752 3.248 15 H -0.182 1.182 16 H -0.195 1.195 17 H -0.171 1.171 18 C -0.323 4.323 19 C 0.020 3.980 20 N -0.213 5.213 21 C 0.001 3.999 22 N -0.215 5.215 23 N -0.360 5.360 24 H 0.078 0.922 25 H 0.110 0.890 26 H 0.079 0.921 27 H 0.157 0.843 28 H 0.184 0.816 29 H 0.249 0.751 30 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 1.220 -9.199 4.119 10.153 hybrid contribution 0.086 -1.030 1.136 1.536 sum 1.306 -10.229 5.256 11.574 Atomic orbital electron populations 1.22840 0.77348 1.02472 1.02878 1.86202 1.22942 1.24746 1.87415 1.19642 0.89096 0.83873 0.86913 1.21431 0.92310 1.00683 1.20472 1.22736 0.99950 0.86091 0.86929 1.68131 1.03991 1.33062 1.22996 1.18354 0.84987 0.83829 0.84481 1.40933 1.08033 1.00966 1.73799 1.16631 0.85513 0.80365 0.88292 1.20157 1.10465 1.17217 0.90520 0.87019 1.26547 0.94878 0.91828 1.02464 1.69503 1.20963 1.17352 1.27940 0.85859 0.81211 0.79535 0.78154 1.18224 1.19508 1.17083 1.12932 1.20069 0.96470 1.02812 1.24595 0.90958 0.90885 0.91537 1.81071 1.15756 1.13167 1.11344 1.25165 0.91299 0.92074 0.91333 1.81010 1.16860 1.10569 1.13085 1.67263 1.41418 0.97965 1.29392 0.92213 0.88985 0.92065 0.84319 0.81560 0.75121 0.88946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.48 10.41 101.05 1.05 1.53 16 2 O -0.31 -4.60 10.49 -18.22 -0.19 -4.79 16 3 C 0.39 6.64 7.53 -16.72 -0.13 6.51 16 4 C -0.32 -4.79 10.12 -39.14 -0.40 -5.19 16 5 C 0.21 3.25 11.29 -17.29 -0.20 3.06 16 6 N -0.56 -10.75 8.94 -13.95 -0.12 -10.87 16 7 C 0.64 12.78 7.27 -322.58 -2.34 10.44 16 8 N -0.61 -12.47 3.28 -11.38 -0.04 -12.51 16 9 C 0.40 8.47 5.39 -83.51 -0.45 8.02 16 10 C -0.36 -7.46 7.50 -38.33 -0.29 -7.74 16 11 H 0.11 2.38 7.22 -52.49 -0.38 2.00 16 12 C 0.07 1.40 5.35 -17.20 -0.09 1.31 16 13 N -0.74 -14.53 11.19 55.60 0.62 -13.91 16 14 Si 0.93 15.32 29.57 -169.99 -5.03 10.30 16 15 H -0.26 -4.26 7.11 56.52 0.40 -3.85 16 16 H -0.27 -4.39 7.11 56.52 0.40 -3.99 16 17 H -0.25 -4.13 7.11 56.52 0.40 -3.73 16 18 C -0.30 -6.77 5.88 -104.95 -0.62 -7.38 16 19 C 0.33 7.57 14.01 -22.46 -0.31 7.26 16 20 N -0.53 -12.65 18.54 41.85 0.78 -11.88 16 21 C 0.31 7.07 14.80 -22.52 -0.33 6.74 16 22 N -0.53 -12.66 18.53 41.79 0.77 -11.88 16 23 N -0.62 -11.66 9.40 -13.94 -0.13 -11.79 16 24 H 0.06 0.75 8.12 -51.93 -0.42 0.33 16 25 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.06 0.77 8.12 -51.93 -0.42 0.35 16 27 H 0.14 1.66 8.06 -52.49 -0.42 1.23 16 28 H 0.17 1.90 8.06 -52.48 -0.42 1.48 16 29 H 0.41 8.18 8.92 -40.82 -0.36 7.82 16 30 H 0.30 5.42 8.29 -40.82 -0.34 5.09 16 LS Contribution 295.74 15.07 4.46 4.46 Total: -1.00 -26.24 295.74 -4.97 -31.22 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -1.99 Total: 7.11 kcal Atomic # 6 Polarization: 28.65 SS G_CDS: -4.10 Total: 24.54 kcal Atomic # 7 Polarization: -74.72 SS G_CDS: 1.88 Total: -72.84 kcal Atomic # 8 Polarization: -4.60 SS G_CDS: -0.19 Total: -4.79 kcal Atomic # 14 Polarization: 15.32 SS G_CDS: -5.03 Total: 10.30 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -26.24 -4.97 -31.22 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158210661.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.473 kcal (2) G-P(sol) polarization free energy of solvation -26.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.218 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds