Wall clock time and date at job start Mon Mar 30 2020 01:31:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.36002 * 116.99891 * 2 1 4 4 C 1.38583 * 120.87733 * 0.25315 * 3 2 1 5 5 N 1.32557 * 119.11955 * 180.27396 * 4 3 2 6 6 C 1.31732 * 121.04892 * 359.73771 * 5 4 3 7 7 N 1.31803 * 121.94456 * 359.97438 * 6 5 4 8 8 C 1.32866 * 120.75422 * 0.02562 * 7 6 5 9 9 N 1.38942 * 120.55820 * 179.97438 * 8 7 6 10 10 C 1.38400 * 119.99445 * 5.34354 * 9 8 7 11 11 C 1.38963 * 120.00115 * 59.11891 * 10 9 8 12 12 H 1.08001 * 119.99686 * 202.56339 * 11 10 9 13 13 C 1.40857 * 119.99907 * 22.56347 * 11 10 9 14 14 N 1.30324 * 120.00000 * 9.23960 * 13 11 10 15 15 Si 1.86800 * 119.99558 * 189.23978 * 13 11 10 16 16 H 1.48500 * 109.47556 * 0.02562 * 15 13 11 17 17 H 1.48498 * 109.47002 * 120.00114 * 15 13 11 18 18 H 1.48502 * 109.47090 * 239.99778 * 15 13 11 19 19 C 1.41138 * 119.99914 * 239.11417 * 10 9 8 20 20 C 1.43196 * 120.00279 * 185.77229 * 19 10 9 21 21 N 7.58392 * 174.93861 * 247.07959 * 2 1 3 22 22 C 1.43206 * 119.99805 * 5.76711 * 19 10 9 23 23 N 5.14503 * 140.29809 * 248.72895 * 2 1 3 24 24 H 1.09001 * 109.47187 * 59.99727 * 1 2 3 25 25 H 1.09007 * 109.47046 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47352 * 299.99550 * 1 2 3 27 27 H 1.07990 * 120.43847 * 359.97438 * 4 3 2 28 28 H 1.08002 * 119.03145 * 180.02562 * 6 5 4 29 29 H 0.96997 * 119.99986 * 185.62087 * 9 8 7 30 30 H 0.96998 * 119.99491 * 184.98210 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.3095 2.3855 0.0053 5 7 1.9472 3.5475 -0.0005 6 6 3.2634 3.6003 -0.0058 7 7 4.0050 2.5106 -0.0053 8 6 3.4433 1.3065 0.0003 9 7 4.2290 0.1606 0.0003 10 6 5.6050 0.2651 0.1061 11 6 6.1717 0.8811 1.2153 12 1 7.1693 1.2906 1.1546 13 6 5.4453 0.9714 2.4187 14 7 4.3214 0.3251 2.5514 15 14 6.0929 2.0175 3.8243 16 1 7.3781 2.6443 3.4236 17 1 5.1051 3.0781 4.1477 18 1 6.3098 1.1622 5.0187 19 6 6.4325 -0.2542 -0.9125 20 6 7.8549 -0.2578 -0.7472 21 7 8.9833 -0.2606 -0.6163 22 6 5.8497 -0.7775 -2.1113 23 7 5.3875 -1.1923 -3.0627 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 0.2301 2.3537 0.0090 28 1 3.7493 4.5648 -0.0100 29 1 3.8134 -0.7124 -0.0780 30 1 3.7852 0.4438 3.3510 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158211123.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:18 Heat of formation + Delta-G solvation = 60.704385 kcal Electronic energy + Delta-G solvation = -19969.628084 eV Core-core repulsion = 16765.328925 eV Total energy + Delta-G solvation = -3204.299159 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.081 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.03023 -39.26719 -38.98932 -37.06953 -36.52444 -35.36067 -33.78383 -32.46079 -30.41135 -28.78824 -28.36690 -24.94218 -24.46180 -22.87538 -20.79226 -19.48361 -19.11648 -18.68934 -17.97840 -17.77185 -16.81310 -16.66603 -16.00076 -15.33507 -15.03524 -14.87212 -14.56547 -14.41544 -14.36902 -13.89351 -13.47287 -13.40197 -13.31516 -13.09623 -12.86199 -12.80350 -12.67809 -12.42168 -12.21018 -11.94949 -11.86310 -11.53136 -10.58007 -9.97289 -9.75106 -9.21144 -8.40544 -7.09756 0.24721 0.26115 0.82750 1.35506 1.51020 1.52288 2.03454 2.08078 2.19576 2.23512 2.33373 2.56058 2.70901 3.08683 3.41244 3.49063 3.51409 3.79415 4.00914 4.05979 4.46361 4.47097 4.60819 4.69237 4.74223 4.80347 5.37057 5.44253 5.67456 5.81585 6.13023 6.15850 6.40085 6.69596 6.84825 7.18931 7.34692 7.50118 7.71688 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.013431 B = 0.009371 C = 0.006761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2084.224842 B = 2987.089664 C = 4140.197348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.325 6.325 3 C -0.038 4.038 4 C 0.082 3.918 5 N -0.548 5.548 6 C 0.287 3.713 7 N -0.550 5.550 8 C 0.441 3.559 9 N -0.624 5.624 10 C 0.380 3.620 11 C -0.349 4.349 12 H 0.102 0.898 13 C 0.052 3.948 14 N -0.728 5.728 15 Si 0.976 3.024 16 H -0.253 1.253 17 H -0.258 1.258 18 H -0.257 1.257 19 C -0.325 4.325 20 C 0.331 3.669 21 N -0.557 5.557 22 C 0.316 3.684 23 N -0.559 5.559 24 H 0.065 0.935 25 H 0.117 0.883 26 H 0.067 0.933 27 H 0.193 0.807 28 H 0.217 0.783 29 H 0.414 0.586 30 H 0.309 0.691 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.463 4.902 6.476 14.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.237 6.237 3 C -0.092 4.092 4 C -0.080 4.080 5 N -0.267 5.267 6 C -0.001 4.001 7 N -0.274 5.274 8 C 0.196 3.804 9 N -0.250 5.250 10 C 0.276 3.724 11 C -0.376 4.376 12 H 0.120 0.880 13 C -0.178 4.178 14 N -0.347 5.347 15 Si 0.795 3.205 16 H -0.176 1.176 17 H -0.182 1.182 18 H -0.182 1.182 19 C -0.345 4.345 20 C 0.025 3.975 21 N -0.240 5.240 22 C 0.011 3.989 23 N -0.242 5.242 24 H 0.084 0.916 25 H 0.135 0.865 26 H 0.086 0.914 27 H 0.210 0.790 28 H 0.234 0.766 29 H 0.253 0.747 30 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -11.030 4.782 5.374 13.169 hybrid contribution -0.717 -0.680 0.699 1.210 sum -11.748 4.102 6.073 13.846 Atomic orbital electron populations 1.23341 0.76298 1.05642 1.02234 1.86052 1.23446 1.24703 1.89500 1.20106 0.91792 0.88178 1.09171 1.23384 1.01642 0.85857 0.97073 1.68261 1.11371 1.28301 1.18806 1.25036 0.86303 0.96899 0.91908 1.68140 1.40941 0.97339 1.21017 1.17996 0.85161 0.87319 0.89927 1.41221 1.03904 1.05676 1.74219 1.16666 0.80246 0.86787 0.88735 1.20321 1.01560 1.22859 0.92870 0.87983 1.27017 0.94146 0.94440 1.02211 1.69484 1.09595 1.26250 1.29328 0.85162 0.80424 0.78518 0.76397 1.17636 1.18182 1.18150 1.12966 0.83776 1.40701 0.97014 1.24798 0.91385 0.90074 0.91240 1.81030 1.12622 1.19044 1.11308 1.25336 0.92055 0.90126 0.91422 1.81042 1.10125 1.19700 1.13363 0.91644 0.86471 0.91402 0.78990 0.76648 0.74737 0.87847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 9.84 113.37 1.12 1.45 16 2 O -0.33 -9.41 9.87 -93.57 -0.92 -10.33 16 3 C -0.04 -1.21 6.75 22.78 0.15 -1.06 16 4 C 0.08 2.26 10.30 84.67 0.87 3.14 16 5 N -0.55 -16.52 10.43 -199.95 -2.09 -18.61 16 6 C 0.29 9.05 12.28 180.90 2.22 11.28 16 7 N -0.55 -20.63 9.05 -197.07 -1.78 -22.42 16 8 C 0.44 16.65 5.97 133.16 0.79 17.45 16 9 N -0.62 -24.95 3.32 -183.86 -0.61 -25.56 16 10 C 0.38 16.34 5.49 38.99 0.21 16.56 16 11 C -0.35 -14.61 7.69 23.08 0.18 -14.43 16 12 H 0.10 4.41 7.17 -2.91 -0.02 4.39 16 13 C 0.05 1.96 5.00 85.56 0.43 2.39 16 14 N -0.73 -27.16 11.09 21.98 0.24 -26.91 16 15 Si 0.98 29.97 29.58 68.60 2.03 32.00 16 16 H -0.25 -8.07 7.11 99.48 0.71 -7.36 16 17 H -0.26 -7.68 7.11 99.48 0.71 -6.97 16 18 H -0.26 -7.60 7.11 99.48 0.71 -6.89 16 19 C -0.33 -14.83 5.88 -20.07 -0.12 -14.95 16 20 C 0.33 15.71 13.99 88.33 1.24 16.95 16 21 N -0.56 -27.18 18.54 19.00 0.35 -26.83 16 22 C 0.32 14.86 14.82 88.33 1.31 16.17 16 23 N -0.56 -27.08 18.54 19.01 0.35 -26.73 16 24 H 0.06 0.96 7.72 -2.39 -0.02 0.95 16 25 H 0.12 1.59 8.14 -2.38 -0.02 1.57 16 26 H 0.07 0.98 7.70 -2.39 -0.02 0.96 16 27 H 0.19 3.76 6.46 -2.92 -0.02 3.74 16 28 H 0.22 5.26 8.06 -2.91 -0.02 5.24 16 29 H 0.41 16.31 8.28 -92.71 -0.77 15.54 16 30 H 0.31 10.38 8.29 -92.71 -0.77 9.61 16 Total: -1.00 -56.12 291.56 6.44 -49.68 By element: Atomic # 1 Polarization: 20.31 SS G_CDS: 0.46 Total: 20.77 kcal Atomic # 6 Polarization: 46.53 SS G_CDS: 8.40 Total: 54.93 kcal Atomic # 7 Polarization: -143.52 SS G_CDS: -3.53 Total: -147.05 kcal Atomic # 8 Polarization: -9.41 SS G_CDS: -0.92 Total: -10.33 kcal Atomic # 14 Polarization: 29.97 SS G_CDS: 2.03 Total: 32.00 kcal Total: -56.12 6.44 -49.68 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158211123.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.381 kcal (2) G-P(sol) polarization free energy of solvation -56.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds