Wall clock time and date at job start Mon Mar 30 2020 01:30:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35540 * 116.99520 * 2 1 4 4 C 1.38973 * 120.46291 * 180.02562 * 3 2 1 5 5 C 1.39203 * 118.28450 * 180.02562 * 4 3 2 6 6 N 1.38815 * 120.49755 * 179.97438 * 5 4 3 7 7 C 1.38441 * 119.99496 * 6.23723 * 6 5 4 8 8 C 1.38939 * 120.00301 * 60.63833 * 7 6 5 9 9 H 1.07999 * 120.00089 * 198.86840 * 8 7 6 10 10 C 1.40860 * 120.00267 * 18.86688 * 8 7 6 11 11 N 1.30319 * 119.99752 * 9.07406 * 10 8 7 12 12 Si 1.86795 * 120.00403 * 189.07512 * 10 8 7 13 13 H 1.48503 * 109.47058 * 59.99779 * 12 10 8 14 14 H 1.48501 * 109.47477 * 179.97438 * 12 10 8 15 15 H 1.48502 * 109.46985 * 300.00281 * 12 10 8 16 16 C 1.41129 * 119.99626 * 240.63579 * 7 6 5 17 17 C 1.43204 * 120.00133 * 174.76826 * 16 7 6 18 18 N 7.13717 * 170.30244 * 141.49974 * 2 1 3 19 19 C 1.43198 * 120.00360 * 354.76477 * 16 7 6 20 20 N 7.22305 * 145.99262 * 46.06037 * 2 1 3 21 21 N 1.33140 * 119.01256 * 359.97438 * 5 4 3 22 22 C 1.31718 * 120.83734 * 359.97438 * 21 5 4 23 23 N 1.31778 * 121.89634 * 0.02562 * 22 21 5 24 24 H 1.08993 * 109.47362 * 59.99543 * 1 2 3 25 25 H 1.08996 * 109.47100 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46919 * 299.99908 * 1 2 3 27 27 H 1.07992 * 120.86093 * 359.74838 * 4 3 2 28 28 H 0.96991 * 120.00075 * 186.23350 * 6 5 4 29 29 H 0.97004 * 120.00173 * 184.99056 * 11 10 8 30 30 H 1.08003 * 119.05456 * 179.97438 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0443 1.2077 0.0000 4 6 3.4315 1.2918 -0.0005 5 6 4.0157 2.5553 0.0000 6 7 5.3971 2.6927 0.0001 7 6 6.2037 1.5752 -0.1307 8 6 6.1179 0.7859 -1.2709 9 1 6.4989 -0.2245 -1.2582 10 6 5.5337 1.3036 -2.4435 11 7 5.2354 2.5700 -2.5186 12 14 5.1867 0.1750 -3.8910 13 1 4.2519 -0.8988 -3.4684 14 1 4.5739 0.9583 -4.9938 15 1 6.4577 -0.4321 -4.3612 16 6 7.1134 1.2378 0.8942 17 6 7.8668 0.0228 0.8115 18 7 8.4642 -0.9409 0.7484 19 6 7.2831 2.1104 2.0169 20 7 7.4167 2.8033 2.9090 21 7 3.2299 3.6301 0.0005 22 6 1.9185 3.5076 0.0000 23 7 1.3292 2.3289 -0.0005 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 4.0405 0.4000 0.0031 28 1 5.7970 3.5715 0.0917 29 1 4.7678 2.9129 -3.2962 30 1 1.3085 4.3989 0.0009 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001158211437.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:56 Heat of formation + Delta-G solvation = 73.300507 kcal Electronic energy + Delta-G solvation = -19805.844460 eV Core-core repulsion = 16602.091510 eV Total energy + Delta-G solvation = -3203.752950 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.081 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.65039 -38.43802 -37.37958 -35.39222 -34.78037 -33.85764 -32.22102 -31.06409 -29.54169 -27.29755 -27.03078 -23.91388 -22.93723 -21.40928 -19.35557 -18.17591 -17.87314 -17.20213 -16.38073 -15.80329 -15.42907 -15.10480 -14.74825 -14.36346 -13.90877 -13.69028 -13.58172 -12.84716 -12.68099 -12.38627 -11.94629 -11.85068 -11.76208 -11.69169 -11.60821 -11.49857 -11.14574 -10.98388 -10.91793 -10.42652 -10.28529 -10.06466 -8.93429 -8.87534 -8.45054 -7.96062 -7.20925 -5.55507 1.58736 1.75337 2.24158 2.64778 2.69578 2.82215 3.20853 3.33458 3.65910 3.81084 3.99638 4.12701 4.26299 4.45491 4.54451 5.04056 5.10311 5.33394 5.40217 5.46063 5.60206 5.66875 5.90281 6.08975 6.18839 6.25308 6.45762 6.92098 7.03171 7.33720 7.49808 7.58491 7.69842 8.08252 8.25036 8.77798 8.89898 9.05041 9.08876 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.013410 B = 0.008472 C = 0.006818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2087.459263 B = 3304.357421 C = 4106.051314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.304 6.304 3 C 0.370 3.630 4 C -0.296 4.296 5 C 0.499 3.501 6 N -0.623 5.623 7 C 0.374 3.626 8 C -0.369 4.369 9 H 0.115 0.885 10 C 0.070 3.930 11 N -0.714 5.714 12 Si 0.922 3.078 13 H -0.248 1.248 14 H -0.269 1.269 15 H -0.250 1.250 16 C -0.306 4.306 17 C 0.325 3.675 18 N -0.528 5.528 19 C 0.307 3.693 20 N -0.529 5.529 21 N -0.590 5.590 22 C 0.360 3.640 23 N -0.625 5.625 24 H 0.057 0.943 25 H 0.092 0.908 26 H 0.057 0.943 27 H 0.155 0.845 28 H 0.411 0.589 29 H 0.304 0.696 30 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.832 0.135 -5.246 12.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.209 6.209 3 C 0.189 3.811 4 C -0.324 4.324 5 C 0.258 3.742 6 N -0.246 5.246 7 C 0.271 3.729 8 C -0.396 4.396 9 H 0.133 0.867 10 C -0.162 4.162 11 N -0.332 5.332 12 Si 0.742 3.258 13 H -0.172 1.172 14 H -0.193 1.193 15 H -0.173 1.173 16 C -0.324 4.324 17 C 0.017 3.983 18 N -0.210 5.210 19 C 0.000 4.000 20 N -0.211 5.211 21 N -0.317 5.317 22 C 0.069 3.931 23 N -0.360 5.360 24 H 0.075 0.925 25 H 0.110 0.890 26 H 0.076 0.924 27 H 0.172 0.828 28 H 0.249 0.751 29 H 0.117 0.883 30 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -10.072 0.264 -4.135 10.891 hybrid contribution -0.137 -0.386 -1.064 1.140 sum -10.209 -0.121 -5.200 11.457 Atomic orbital electron populations 1.22807 0.77702 1.02501 1.02318 1.86229 1.22483 1.24752 1.87486 1.19635 0.88892 0.84450 0.88162 1.21193 0.92657 0.99821 1.18746 1.17736 0.84918 0.87742 0.83843 1.41132 1.00767 1.09483 1.73256 1.16709 0.84746 0.82136 0.89352 1.20313 1.25562 1.01675 0.92040 0.86738 1.26523 0.92345 0.95836 1.01537 1.69492 1.19719 1.13606 1.30400 0.86012 0.81088 0.80561 0.78090 1.17172 1.19280 1.17334 1.12828 1.20422 0.98446 1.00737 1.24600 0.90811 0.91204 0.91721 1.81057 1.15080 1.13867 1.11017 1.25209 0.91401 0.92028 0.91397 1.81145 1.14074 1.13009 1.12857 1.67872 1.06225 1.32595 1.25014 1.24120 0.87339 0.93531 0.88069 1.67971 1.41497 0.98983 1.27557 0.92464 0.88990 0.92412 0.82762 0.75074 0.88328 0.79309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.49 10.41 101.05 1.05 1.55 16 2 O -0.30 -4.91 10.49 -18.31 -0.19 -5.10 16 3 C 0.37 6.56 7.52 -16.78 -0.13 6.44 16 4 C -0.30 -5.61 8.56 -38.95 -0.33 -5.94 16 5 C 0.50 9.53 6.04 -154.54 -0.93 8.60 16 6 N -0.62 -12.07 3.33 -9.63 -0.03 -12.11 16 7 C 0.37 7.54 5.01 -83.52 -0.42 7.12 16 8 C -0.37 -7.24 7.02 -38.33 -0.27 -7.51 16 9 H 0.11 2.26 6.97 -52.49 -0.37 1.89 16 10 C 0.07 1.28 4.73 -17.20 -0.08 1.20 16 11 N -0.71 -13.39 10.80 55.60 0.60 -12.79 16 12 Si 0.92 14.63 29.58 -169.99 -5.03 9.60 16 13 H -0.25 -4.02 7.11 56.52 0.40 -3.61 16 14 H -0.27 -4.18 7.11 56.52 0.40 -3.78 16 15 H -0.25 -4.00 7.11 56.52 0.40 -3.60 16 16 C -0.31 -6.51 5.88 -104.95 -0.62 -7.12 16 17 C 0.32 7.21 13.88 -22.49 -0.31 6.90 16 18 N -0.53 -12.20 18.53 41.82 0.78 -11.43 16 19 C 0.31 6.83 14.82 -22.43 -0.33 6.50 16 20 N -0.53 -12.32 18.55 41.89 0.78 -11.54 16 21 N -0.59 -10.61 10.47 -13.83 -0.14 -10.76 16 22 C 0.36 5.65 12.28 -92.23 -1.13 4.52 16 23 N -0.62 -10.30 9.38 -14.71 -0.14 -10.43 16 24 H 0.06 0.65 8.12 -51.93 -0.42 0.23 16 25 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.06 0.66 8.12 -51.93 -0.42 0.23 16 27 H 0.15 3.01 6.33 -52.49 -0.33 2.68 16 28 H 0.41 7.87 8.93 -40.82 -0.36 7.51 16 29 H 0.30 5.34 8.29 -40.82 -0.34 5.00 16 30 H 0.19 2.19 8.06 -52.48 -0.42 1.76 16 LS Contribution 291.54 15.07 4.39 4.39 Total: -1.00 -24.85 291.54 -4.38 -29.22 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -1.88 Total: 8.71 kcal Atomic # 6 Polarization: 25.74 SS G_CDS: -3.50 Total: 22.24 kcal Atomic # 7 Polarization: -70.90 SS G_CDS: 1.84 Total: -69.06 kcal Atomic # 8 Polarization: -4.91 SS G_CDS: -0.19 Total: -5.10 kcal Atomic # 14 Polarization: 14.63 SS G_CDS: -5.03 Total: 9.60 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -24.85 -4.38 -29.22 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158211437.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.525 kcal (2) G-P(sol) polarization free energy of solvation -24.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.224 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds