Wall clock time and date at job start Mon Mar 30 2020 01:30:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35540 * 116.99520 * 2 1 4 4 C 1.38973 * 120.46291 * 180.02562 * 3 2 1 5 5 C 1.39203 * 118.28450 * 180.02562 * 4 3 2 6 6 N 1.38815 * 120.49755 * 179.97438 * 5 4 3 7 7 C 1.38441 * 119.99496 * 6.23723 * 6 5 4 8 8 C 1.38939 * 120.00301 * 60.63833 * 7 6 5 9 9 H 1.07999 * 120.00089 * 198.86840 * 8 7 6 10 10 C 1.40860 * 120.00267 * 18.86688 * 8 7 6 11 11 N 1.30319 * 119.99752 * 9.07406 * 10 8 7 12 12 Si 1.86795 * 120.00403 * 189.07512 * 10 8 7 13 13 H 1.48503 * 109.47058 * 59.99779 * 12 10 8 14 14 H 1.48501 * 109.47477 * 179.97438 * 12 10 8 15 15 H 1.48502 * 109.46985 * 300.00281 * 12 10 8 16 16 C 1.41129 * 119.99626 * 240.63579 * 7 6 5 17 17 C 1.43204 * 120.00133 * 174.76826 * 16 7 6 18 18 N 7.13717 * 170.30244 * 141.49974 * 2 1 3 19 19 C 1.43198 * 120.00360 * 354.76477 * 16 7 6 20 20 N 7.22305 * 145.99262 * 46.06037 * 2 1 3 21 21 N 1.33140 * 119.01256 * 359.97438 * 5 4 3 22 22 C 1.31718 * 120.83734 * 359.97438 * 21 5 4 23 23 N 1.31778 * 121.89634 * 0.02562 * 22 21 5 24 24 H 1.08993 * 109.47362 * 59.99543 * 1 2 3 25 25 H 1.08996 * 109.47100 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46919 * 299.99908 * 1 2 3 27 27 H 1.07992 * 120.86093 * 359.74838 * 4 3 2 28 28 H 0.96991 * 120.00075 * 186.23350 * 6 5 4 29 29 H 0.97004 * 120.00173 * 184.99056 * 11 10 8 30 30 H 1.08003 * 119.05456 * 179.97438 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0443 1.2077 0.0000 4 6 3.4315 1.2918 -0.0005 5 6 4.0157 2.5553 0.0000 6 7 5.3971 2.6927 0.0001 7 6 6.2037 1.5752 -0.1307 8 6 6.1179 0.7859 -1.2709 9 1 6.4989 -0.2245 -1.2582 10 6 5.5337 1.3036 -2.4435 11 7 5.2354 2.5700 -2.5186 12 14 5.1867 0.1750 -3.8910 13 1 4.2519 -0.8988 -3.4684 14 1 4.5739 0.9583 -4.9938 15 1 6.4577 -0.4321 -4.3612 16 6 7.1134 1.2378 0.8942 17 6 7.8668 0.0228 0.8115 18 7 8.4642 -0.9409 0.7484 19 6 7.2831 2.1104 2.0169 20 7 7.4167 2.8033 2.9090 21 7 3.2299 3.6301 0.0005 22 6 1.9185 3.5076 0.0000 23 7 1.3292 2.3289 -0.0005 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 4.0405 0.4000 0.0031 28 1 5.7970 3.5715 0.0917 29 1 4.7678 2.9129 -3.2962 30 1 1.3085 4.3989 0.0009 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158211437.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:56 Heat of formation + Delta-G solvation = 58.986227 kcal Electronic energy + Delta-G solvation = -19806.465173 eV Core-core repulsion = 16602.091510 eV Total energy + Delta-G solvation = -3204.373664 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.081 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.99009 -39.78733 -38.79998 -37.09277 -36.55294 -35.33284 -33.65064 -32.46072 -31.00860 -28.88914 -28.10340 -25.26207 -24.31907 -22.90258 -20.90509 -19.58496 -19.31566 -18.69793 -17.86849 -17.00432 -16.84945 -16.43628 -16.15953 -15.65058 -15.25043 -15.02271 -14.81593 -14.55742 -14.39801 -13.92702 -13.52070 -13.40894 -13.36745 -13.13138 -12.89321 -12.81750 -12.73783 -12.54454 -12.18058 -11.87086 -11.65674 -11.44659 -10.30142 -10.23585 -9.94415 -9.41487 -8.71378 -7.19642 0.18812 0.35555 0.80487 1.32967 1.46067 1.51637 1.92852 2.01659 2.04608 2.20906 2.26042 2.53407 2.63196 3.09003 3.35292 3.37883 3.71401 3.83145 4.19153 4.44264 4.49783 4.53475 4.58682 4.61220 4.77052 4.83466 5.16020 5.34158 5.53533 5.89448 5.96893 6.16082 6.31500 6.57570 6.77835 7.14685 7.30788 7.43281 7.62709 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.013410 B = 0.008472 C = 0.006818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2087.459263 B = 3304.357421 C = 4106.051314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.317 6.317 3 C 0.371 3.629 4 C -0.317 4.317 5 C 0.491 3.509 6 N -0.625 5.625 7 C 0.370 3.630 8 C -0.361 4.361 9 H 0.112 0.888 10 C 0.047 3.953 11 N -0.717 5.717 12 Si 0.971 3.029 13 H -0.252 1.252 14 H -0.258 1.258 15 H -0.250 1.250 16 C -0.319 4.319 17 C 0.331 3.669 18 N -0.551 5.551 19 C 0.315 3.685 20 N -0.554 5.554 21 N -0.603 5.603 22 C 0.362 3.638 23 N -0.620 5.620 24 H 0.061 0.939 25 H 0.123 0.877 26 H 0.060 0.940 27 H 0.142 0.858 28 H 0.409 0.591 29 H 0.313 0.687 30 H 0.232 0.768 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.653 0.226 -6.594 14.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.222 6.222 3 C 0.188 3.812 4 C -0.345 4.345 5 C 0.250 3.750 6 N -0.248 5.248 7 C 0.266 3.734 8 C -0.388 4.388 9 H 0.130 0.870 10 C -0.185 4.185 11 N -0.335 5.335 12 Si 0.790 3.210 13 H -0.176 1.176 14 H -0.182 1.182 15 H -0.174 1.174 16 C -0.338 4.338 17 C 0.024 3.976 18 N -0.234 5.234 19 C 0.009 3.991 20 N -0.238 5.238 21 N -0.331 5.331 22 C 0.073 3.927 23 N -0.355 5.355 24 H 0.080 0.920 25 H 0.141 0.859 26 H 0.079 0.921 27 H 0.160 0.840 28 H 0.247 0.753 29 H 0.125 0.875 30 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -11.915 0.366 -5.474 13.118 hybrid contribution 0.259 -0.394 -0.731 0.870 sum -11.656 -0.028 -6.206 13.206 Atomic orbital electron populations 1.23130 0.75303 1.04752 1.02655 1.86221 1.24879 1.24093 1.87006 1.19760 0.88742 0.85340 0.87322 1.21153 0.93428 0.99354 1.20611 1.17850 0.84793 0.88241 0.84100 1.41064 1.01017 1.09038 1.73713 1.16684 0.84827 0.82688 0.89217 1.20497 1.24501 1.01397 0.92378 0.87027 1.27038 0.92027 0.96758 1.02641 1.69490 1.18687 1.14311 1.31019 0.85289 0.80737 0.79061 0.75943 1.17588 1.18199 1.17382 1.12848 1.21440 0.98364 1.01182 1.24721 0.90497 0.91172 0.91239 1.81043 1.16013 1.14546 1.11765 1.25332 0.90831 0.91742 0.91226 1.81130 1.15158 1.13864 1.13618 1.67941 1.07159 1.32225 1.25744 1.25013 0.86985 0.94636 0.86079 1.68103 1.41070 0.98878 1.27488 0.92035 0.85906 0.92078 0.84013 0.75275 0.87482 0.75206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.75 10.41 113.37 1.18 1.93 16 2 O -0.32 -9.72 10.49 -88.45 -0.93 -10.65 16 3 C 0.37 12.65 7.52 84.69 0.64 13.29 16 4 C -0.32 -11.88 8.56 22.68 0.19 -11.68 16 5 C 0.49 18.46 6.04 132.92 0.80 19.26 16 6 N -0.63 -24.18 3.33 -184.39 -0.61 -24.79 16 7 C 0.37 14.94 5.01 38.98 0.20 15.14 16 8 C -0.36 -14.03 7.02 23.08 0.16 -13.86 16 9 H 0.11 4.38 6.97 -2.91 -0.02 4.36 16 10 C 0.05 1.67 4.73 85.56 0.40 2.07 16 11 N -0.72 -25.90 10.80 21.98 0.24 -25.66 16 12 Si 0.97 28.35 29.58 68.60 2.03 30.38 16 13 H -0.25 -7.53 7.11 99.48 0.71 -6.82 16 14 H -0.26 -7.12 7.11 99.48 0.71 -6.41 16 15 H -0.25 -7.34 7.11 99.48 0.71 -6.63 16 16 C -0.32 -13.74 5.88 -20.08 -0.12 -13.86 16 17 C 0.33 14.81 13.88 88.34 1.23 16.04 16 18 N -0.55 -25.59 18.53 19.00 0.35 -25.24 16 19 C 0.31 14.19 14.82 88.31 1.31 15.50 16 20 N -0.55 -26.12 18.55 19.02 0.35 -25.77 16 21 N -0.60 -20.84 10.47 -197.66 -2.07 -22.90 16 22 C 0.36 10.49 12.28 180.91 2.22 12.71 16 23 N -0.62 -19.07 9.38 -313.03 -2.94 -22.00 16 24 H 0.06 1.24 8.12 -2.39 -0.02 1.22 16 25 H 0.12 1.79 8.14 -2.39 -0.02 1.77 16 26 H 0.06 1.24 8.12 -2.39 -0.02 1.22 16 27 H 0.14 5.58 6.33 -2.91 -0.02 5.56 16 28 H 0.41 15.76 8.93 -92.71 -0.83 14.93 16 29 H 0.31 10.35 8.29 -92.71 -0.77 9.58 16 30 H 0.23 4.48 8.06 -2.91 -0.02 4.45 16 Total: -1.00 -51.90 291.54 5.04 -46.86 By element: Atomic # 1 Polarization: 22.84 SS G_CDS: 0.40 Total: 23.24 kcal Atomic # 6 Polarization: 48.32 SS G_CDS: 8.21 Total: 56.54 kcal Atomic # 7 Polarization: -141.70 SS G_CDS: -4.68 Total: -146.37 kcal Atomic # 8 Polarization: -9.72 SS G_CDS: -0.93 Total: -10.65 kcal Atomic # 14 Polarization: 28.35 SS G_CDS: 2.03 Total: 30.38 kcal Total: -51.90 5.04 -46.86 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158211437.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.848 kcal (2) G-P(sol) polarization free energy of solvation -51.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.861 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds