Wall clock time and date at job start Mon Mar 30 2020 01:26:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86796 * 119.99952 * 2 1 4 4 H 1.48502 * 109.47203 * 269.99700 * 3 2 1 5 5 H 1.48506 * 109.46989 * 29.99699 * 3 2 1 6 6 H 1.48506 * 109.47313 * 149.99599 * 3 2 1 7 7 C 1.38796 * 120.00100 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00101 * 180.02562 * 7 2 1 9 9 S 1.76204 * 120.00054 * 0.02562 * 7 2 1 10 10 C 1.81002 * 100.00151 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.47156 * 180.02562 * 10 9 7 12 12 O 1.21280 * 119.99781 * 359.97438 * 11 10 9 13 13 N 1.34771 * 119.99622 * 180.02562 * 11 10 9 14 14 C 1.46505 * 119.99622 * 179.97438 * 13 11 10 15 15 C 1.52997 * 109.47212 * 179.97438 * 14 13 11 16 16 C 1.50697 * 109.47466 * 179.97438 * 15 14 13 17 17 N 1.30883 * 125.89458 * 305.02734 * 16 15 14 18 18 C 1.33653 * 109.77145 * 179.97438 * 17 16 15 19 19 N 1.39604 * 125.61180 * 180.02562 * 18 17 16 20 20 N 1.31205 * 108.77900 * 359.97438 * 18 17 16 21 21 N 1.34349 * 125.89416 * 124.71366 * 16 15 14 22 22 H 0.96999 * 126.76054 * 0.03776 * 21 16 15 23 23 H 0.96999 * 120.00126 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.46925 * 60.00021 * 10 9 7 25 25 H 1.09002 * 109.47115 * 300.00178 * 10 9 7 26 26 H 0.96996 * 120.00772 * 359.97438 * 13 11 10 27 27 H 1.09002 * 109.47068 * 299.99729 * 14 13 11 28 28 H 1.09001 * 109.47372 * 59.99816 * 14 13 11 29 29 H 1.09002 * 109.47153 * 300.00008 * 15 14 13 30 30 H 1.08998 * 109.47533 * 59.99637 * 15 14 13 31 31 H 0.97005 * 119.99781 * 359.97438 * 19 18 17 32 32 H 0.96997 * 120.00071 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5479 1.4402 0.7001 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1293 -2.7280 0.0005 10 6 2.5159 -3.8915 0.0021 11 6 1.9874 -5.3028 0.0017 12 8 0.7911 -5.5023 0.0009 13 7 2.8442 -6.3431 0.0033 14 6 2.3305 -7.7151 0.0034 15 6 3.5025 -8.6985 0.0046 16 6 2.9741 -10.1098 0.0055 17 7 2.1347 -10.6145 0.8737 18 6 1.8837 -11.8917 0.5703 19 7 1.0339 -12.7435 1.2781 20 7 2.5667 -12.2129 -0.5030 21 7 3.2787 -11.0655 -0.8884 22 1 3.8747 -10.9802 -1.6490 23 1 -0.4850 0.8400 -0.0004 24 1 3.1238 -3.7310 0.8925 25 1 3.1252 -3.7318 -0.8874 26 1 3.8010 -6.1835 0.0043 27 1 1.7209 -7.8747 0.8928 28 1 1.7228 -7.8757 -0.8871 29 1 4.1118 -8.5388 -0.8850 30 1 4.1105 -8.5381 0.8949 31 1 0.5666 -12.4192 2.0639 32 1 0.9106 -13.6596 0.9842 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160777043.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:52 Heat of formation + Delta-G solvation = 48.025740 kcal Electronic energy + Delta-G solvation = -17105.973309 eV Core-core repulsion = 14036.568314 eV Total energy + Delta-G solvation = -3069.404995 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.084 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.30045 -39.17783 -35.81664 -34.79276 -32.57791 -32.42498 -31.63863 -29.80508 -28.27272 -25.50305 -23.90380 -22.19865 -20.90876 -20.40016 -18.43839 -17.84641 -16.75705 -16.34683 -16.28235 -15.87801 -15.58076 -15.40128 -14.80271 -14.33425 -14.09235 -13.70052 -13.20764 -12.59241 -12.47551 -12.45982 -12.00401 -11.61657 -11.45983 -11.06309 -11.02357 -10.76484 -10.23049 -10.07025 -9.81583 -9.43160 -9.07118 -8.93035 -8.62290 -8.23159 -6.49836 -6.21426 -3.92084 1.37621 2.25955 2.80967 2.95083 3.09285 3.15010 3.22459 3.28810 3.33703 3.70715 4.06955 4.20504 4.44066 4.61829 4.85937 5.05949 5.13706 5.16725 5.59615 5.61206 5.69341 5.88743 5.92613 6.02618 6.13297 6.53805 6.72101 7.06931 7.12926 7.59558 7.66061 8.09749 8.35292 8.59703 9.23816 10.86000 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.061622 B = 0.002680 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 454.272134 B =10444.101907 C =10740.819291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.061 6.061 10 C -0.153 4.153 11 C 0.532 3.468 12 O -0.514 6.514 13 N -0.740 5.740 14 C 0.131 3.869 15 C -0.054 4.054 16 C 0.317 3.683 17 N -0.560 5.560 18 C 0.478 3.522 19 N -0.825 5.825 20 N -0.372 5.372 21 N -0.480 5.480 22 H 0.440 0.560 23 H 0.268 0.732 24 H 0.091 0.909 25 H 0.090 0.910 26 H 0.398 0.602 27 H 0.083 0.917 28 H 0.068 0.932 29 H 0.095 0.905 30 H 0.109 0.891 31 H 0.416 0.584 32 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.921 -21.390 -0.095 23.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.303 4.303 11 C 0.318 3.682 12 O -0.387 6.387 13 N -0.396 5.396 14 C 0.005 3.995 15 C -0.094 4.094 16 C 0.037 3.963 17 N -0.296 5.296 18 C 0.106 3.894 19 N -0.382 5.382 20 N -0.212 5.212 21 N -0.199 5.199 22 H 0.286 0.714 23 H 0.078 0.922 24 H 0.109 0.891 25 H 0.108 0.892 26 H 0.232 0.768 27 H 0.101 0.899 28 H 0.086 0.914 29 H 0.114 0.886 30 H 0.127 0.873 31 H 0.247 0.753 32 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 7.574 -22.120 -0.128 23.381 hybrid contribution 2.645 1.212 -0.326 2.928 sum 10.219 -20.908 -0.454 23.276 Atomic orbital electron populations 1.70018 1.05957 1.27464 1.46836 1.24998 0.95031 0.99047 0.94558 0.86165 0.79403 0.81574 0.78325 1.20292 1.20762 1.19695 1.22864 0.94899 0.91645 1.58952 0.90907 1.85439 1.04917 0.96341 1.96718 1.23527 1.06591 0.95243 1.04984 1.20306 0.86506 0.86213 0.75157 1.90723 1.15374 1.85533 1.47108 1.45936 1.09995 1.05221 1.78438 1.21088 0.94566 0.79906 1.03892 1.20393 0.98724 0.84971 1.05357 1.23757 0.92645 0.93513 0.86421 1.70198 1.21252 1.08247 1.29888 1.20458 0.91624 0.87754 0.89571 1.40985 1.50842 1.13027 1.33306 1.78169 1.18784 1.05733 1.18515 1.47596 1.38907 1.07800 1.25605 0.71390 0.92174 0.89097 0.89179 0.76770 0.89863 0.91400 0.88642 0.87311 0.75339 0.75681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.09 13.22 55.49 0.73 -25.36 16 2 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 3 Si 0.92 21.24 29.55 -169.99 -5.02 16.21 16 4 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 7 C -0.54 -15.10 9.50 30.94 0.29 -14.80 16 8 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 9 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 10 C -0.15 -2.97 6.16 36.01 0.22 -2.75 16 11 C 0.53 9.59 7.85 -10.99 -0.09 9.51 16 12 O -0.51 -11.62 15.86 5.56 0.09 -11.53 16 13 N -0.74 -8.87 5.56 -60.29 -0.33 -9.21 16 14 C 0.13 1.43 5.63 -4.04 -0.02 1.40 16 15 C -0.05 -0.36 5.96 -27.89 -0.17 -0.53 16 16 C 0.32 2.99 7.50 -155.73 -1.17 1.82 16 17 N -0.56 -6.74 11.18 -11.13 -0.12 -6.86 16 18 C 0.48 5.48 9.44 -321.17 -3.03 2.45 16 19 N -0.82 -6.46 9.13 30.00 0.27 -6.19 16 20 N -0.37 -4.25 12.82 29.99 0.38 -3.86 16 21 N -0.48 -4.14 7.43 32.61 0.24 -3.90 16 22 H 0.44 2.20 8.96 -182.35 -1.63 0.56 16 23 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 24 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 25 H 0.09 1.59 8.14 -51.92 -0.42 1.17 16 26 H 0.40 3.28 8.47 -40.82 -0.35 2.94 16 27 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 28 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.11 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.42 2.66 8.96 -40.82 -0.37 2.29 16 32 H 0.41 2.33 8.96 -40.82 -0.37 1.96 16 LS Contribution 304.49 15.07 4.59 4.59 Total: -1.00 -38.27 304.49 -10.23 -48.50 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: -4.79 Total: 2.38 kcal Atomic # 6 Polarization: 3.13 SS G_CDS: -4.05 Total: -0.92 kcal Atomic # 7 Polarization: -56.55 SS G_CDS: 1.18 Total: -55.38 kcal Atomic # 8 Polarization: -11.62 SS G_CDS: 0.09 Total: -11.53 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -38.27 -10.23 -48.50 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160777043.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.525 kcal (2) G-P(sol) polarization free energy of solvation -38.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.500 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds