Wall clock time and date at job start Mon Mar 30 2020 01:26:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86796 * 119.99952 * 2 1 4 4 H 1.48502 * 109.47203 * 269.99700 * 3 2 1 5 5 H 1.48506 * 109.46989 * 29.99699 * 3 2 1 6 6 H 1.48506 * 109.47313 * 149.99599 * 3 2 1 7 7 C 1.38796 * 120.00100 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00101 * 180.02562 * 7 2 1 9 9 S 1.76204 * 120.00054 * 0.02562 * 7 2 1 10 10 C 1.81002 * 100.00151 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.47156 * 180.02562 * 10 9 7 12 12 O 1.21280 * 119.99781 * 359.97438 * 11 10 9 13 13 N 1.34771 * 119.99622 * 180.02562 * 11 10 9 14 14 C 1.46505 * 119.99622 * 179.97438 * 13 11 10 15 15 C 1.52997 * 109.47212 * 179.97438 * 14 13 11 16 16 C 1.50697 * 109.47466 * 179.97438 * 15 14 13 17 17 N 1.30883 * 125.89458 * 305.02734 * 16 15 14 18 18 C 1.33653 * 109.77145 * 179.97438 * 17 16 15 19 19 N 1.39604 * 125.61180 * 180.02562 * 18 17 16 20 20 N 1.31205 * 108.77900 * 359.97438 * 18 17 16 21 21 N 1.34349 * 125.89416 * 124.71366 * 16 15 14 22 22 H 0.96999 * 126.76054 * 0.03776 * 21 16 15 23 23 H 0.96999 * 120.00126 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.46925 * 60.00021 * 10 9 7 25 25 H 1.09002 * 109.47115 * 300.00178 * 10 9 7 26 26 H 0.96996 * 120.00772 * 359.97438 * 13 11 10 27 27 H 1.09002 * 109.47068 * 299.99729 * 14 13 11 28 28 H 1.09001 * 109.47372 * 59.99816 * 14 13 11 29 29 H 1.09002 * 109.47153 * 300.00008 * 15 14 13 30 30 H 1.08998 * 109.47533 * 59.99637 * 15 14 13 31 31 H 0.97005 * 119.99781 * 359.97438 * 19 18 17 32 32 H 0.96997 * 120.00071 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5479 1.4402 0.7001 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1293 -2.7280 0.0005 10 6 2.5159 -3.8915 0.0021 11 6 1.9874 -5.3028 0.0017 12 8 0.7911 -5.5023 0.0009 13 7 2.8442 -6.3431 0.0033 14 6 2.3305 -7.7151 0.0034 15 6 3.5025 -8.6985 0.0046 16 6 2.9741 -10.1098 0.0055 17 7 2.1347 -10.6145 0.8737 18 6 1.8837 -11.8917 0.5703 19 7 1.0339 -12.7435 1.2781 20 7 2.5667 -12.2129 -0.5030 21 7 3.2787 -11.0655 -0.8884 22 1 3.8747 -10.9802 -1.6490 23 1 -0.4850 0.8400 -0.0004 24 1 3.1238 -3.7310 0.8925 25 1 3.1252 -3.7318 -0.8874 26 1 3.8010 -6.1835 0.0043 27 1 1.7209 -7.8747 0.8928 28 1 1.7228 -7.8757 -0.8871 29 1 4.1118 -8.5388 -0.8850 30 1 4.1105 -8.5381 0.8949 31 1 0.5666 -12.4192 2.0639 32 1 0.9106 -13.6596 0.9842 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001160777043.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:51 Heat of formation + Delta-G solvation = 18.221538 kcal Electronic energy + Delta-G solvation = -17107.265716 eV Core-core repulsion = 14036.568314 eV Total energy + Delta-G solvation = -3070.697402 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.084 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.03825 -40.55980 -36.77527 -35.63036 -34.55675 -33.49706 -32.47124 -31.01170 -29.31476 -27.63587 -24.84127 -22.93307 -21.86193 -21.53662 -19.82709 -19.14083 -17.82202 -17.44259 -17.19510 -16.85388 -16.78648 -16.57744 -16.45326 -15.74638 -15.35181 -14.74848 -14.66797 -14.31834 -13.61960 -13.23804 -13.13456 -13.06913 -12.86497 -12.59265 -12.43427 -12.19583 -11.70436 -11.11661 -11.03130 -10.97992 -10.82664 -10.22881 -10.10749 -9.30902 -8.63629 -8.31937 -6.09773 0.64231 1.29509 1.44814 1.48827 1.57806 1.65962 1.67552 2.02888 2.24496 2.30763 2.58129 3.02350 3.34663 3.42458 3.79546 3.91670 4.10241 4.15487 4.37922 4.51102 4.57617 4.87768 4.91878 5.06754 5.27452 5.41851 5.45002 6.16714 6.22776 6.39929 6.55751 6.57271 7.09513 7.30541 7.41746 8.77289 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.061622 B = 0.002680 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 454.272134 B =10444.101907 C =10740.819291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.011 3.989 3 Si 0.999 3.001 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.256 1.256 7 C -0.543 4.543 8 H 0.085 0.915 9 S -0.160 6.160 10 C -0.127 4.127 11 C 0.533 3.467 12 O -0.569 6.569 13 N -0.707 5.707 14 C 0.134 3.866 15 C -0.040 4.040 16 C 0.317 3.683 17 N -0.596 5.596 18 C 0.461 3.539 19 N -0.815 5.815 20 N -0.397 5.397 21 N -0.468 5.468 22 H 0.456 0.544 23 H 0.270 0.730 24 H 0.114 0.886 25 H 0.115 0.885 26 H 0.422 0.578 27 H 0.058 0.942 28 H 0.054 0.946 29 H 0.138 0.862 30 H 0.131 0.869 31 H 0.421 0.579 32 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.053 -21.469 -0.391 25.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.194 4.194 3 Si 0.821 3.179 4 H -0.193 1.193 5 H -0.205 1.205 6 H -0.180 1.180 7 C -0.691 4.691 8 H 0.104 0.896 9 S 0.068 5.932 10 C -0.278 4.278 11 C 0.318 3.682 12 O -0.447 6.447 13 N -0.363 5.363 14 C 0.008 3.992 15 C -0.080 4.080 16 C 0.037 3.963 17 N -0.333 5.333 18 C 0.089 3.911 19 N -0.374 5.374 20 N -0.238 5.238 21 N -0.189 5.189 22 H 0.305 0.695 23 H 0.079 0.921 24 H 0.132 0.868 25 H 0.133 0.867 26 H 0.261 0.739 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.156 0.844 30 H 0.149 0.851 31 H 0.253 0.747 32 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 10.783 -22.249 -0.437 24.728 hybrid contribution 1.712 1.091 -0.239 2.044 sum 12.495 -21.158 -0.676 24.581 Atomic orbital electron populations 1.70194 1.08040 1.28546 1.48186 1.26149 0.95955 1.03415 0.93852 0.84943 0.78224 0.75983 0.78754 1.19338 1.20549 1.18015 1.23210 0.95403 0.91872 1.58584 0.89647 1.85667 1.10999 0.99509 1.97066 1.23365 1.03357 0.93925 1.07199 1.20105 0.86187 0.86811 0.75056 1.90715 1.17784 1.86138 1.50059 1.45546 1.10568 1.04418 1.75720 1.21048 0.96193 0.79820 1.02097 1.20433 0.97080 0.81868 1.08572 1.24137 0.91941 0.94361 0.85854 1.70197 1.22751 1.08798 1.31509 1.20861 0.92180 0.88140 0.89961 1.41035 1.50052 1.13175 1.33109 1.78081 1.19574 1.07237 1.18891 1.47508 1.38625 1.06965 1.25832 0.69512 0.92081 0.86829 0.86692 0.73930 0.92388 0.92781 0.84428 0.85104 0.74694 0.74624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.04 13.22 21.65 0.29 -55.75 16 2 C 0.01 0.61 5.49 84.86 0.47 1.08 16 3 Si 1.00 43.06 29.55 68.60 2.03 45.09 16 4 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 5 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 6 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 7 C -0.54 -30.48 9.50 67.95 0.65 -29.84 16 8 H 0.09 4.40 7.80 -2.91 -0.02 4.37 16 9 S -0.16 -8.75 20.57 -56.49 -1.16 -9.91 16 10 C -0.13 -4.75 6.16 71.24 0.44 -4.31 16 11 C 0.53 18.60 7.85 87.66 0.69 19.29 16 12 O -0.57 -26.22 15.86 -3.03 -0.05 -26.27 16 13 N -0.71 -14.98 5.56 -463.06 -2.57 -17.55 16 14 C 0.13 2.67 5.63 86.38 0.49 3.15 16 15 C -0.04 -0.39 5.96 29.85 0.18 -0.21 16 16 C 0.32 5.33 7.50 138.24 1.04 6.37 16 17 N -0.60 -13.85 11.18 -189.12 -2.11 -15.96 16 18 C 0.46 10.33 9.44 260.91 2.46 12.79 16 19 N -0.81 -12.51 9.13 -59.00 -0.54 -13.05 16 20 N -0.40 -8.68 12.82 -59.03 -0.76 -9.44 16 21 N -0.47 -7.15 7.43 -50.73 -0.38 -7.53 16 22 H 0.46 3.36 8.96 -213.11 -1.91 1.45 16 23 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 24 H 0.11 3.74 8.14 -2.39 -0.02 3.72 16 25 H 0.11 3.73 8.14 -2.39 -0.02 3.71 16 26 H 0.42 5.04 8.47 -92.71 -0.79 4.25 16 27 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.14 0.24 8.14 -2.39 -0.02 0.22 16 30 H 0.13 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.42 5.31 8.96 -92.70 -0.83 4.48 16 32 H 0.42 4.59 8.96 -92.71 -0.83 3.76 16 Total: -1.00 -87.02 304.49 -2.00 -89.02 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: -3.15 Total: 13.03 kcal Atomic # 6 Polarization: 1.92 SS G_CDS: 6.40 Total: 8.32 kcal Atomic # 7 Polarization: -113.21 SS G_CDS: -6.07 Total: -119.28 kcal Atomic # 8 Polarization: -26.22 SS G_CDS: -0.05 Total: -26.27 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.09 kcal Atomic # 16 Polarization: -8.75 SS G_CDS: -1.16 Total: -9.91 kcal Total: -87.02 -2.00 -89.02 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160777043.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.239 kcal (2) G-P(sol) polarization free energy of solvation -87.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.018 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds