Wall clock time and date at job start Mon Mar 30 2020 01:09:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.46894 * 2 1 4 4 H 1.09000 * 109.47140 * 304.99571 * 3 2 1 5 5 C 1.50706 * 109.47430 * 184.99730 * 3 2 1 6 6 H 1.07999 * 120.00193 * 240.00552 * 5 3 2 7 7 C 1.37879 * 119.99398 * 59.99633 * 5 3 2 8 8 N 1.31514 * 119.99350 * 180.02562 * 7 5 3 9 9 Si 1.86798 * 120.00608 * 0.02562 * 7 5 3 10 10 H 1.48493 * 109.47326 * 270.00340 * 9 7 5 11 11 H 1.48506 * 109.46545 * 30.00090 * 9 7 5 12 12 H 1.48498 * 109.47210 * 149.99801 * 9 7 5 13 13 N 1.46500 * 109.47204 * 64.99698 * 3 2 1 14 14 C 1.38767 * 120.00219 * 274.99450 * 13 3 2 15 15 N 1.32874 * 120.54603 * 359.72978 * 14 13 3 16 16 C 1.31930 * 120.73132 * 179.70707 * 15 14 13 17 17 Cl 1.73594 * 119.05140 * 180.28742 * 16 15 14 18 18 N 1.31840 * 121.89932 * 0.57742 * 16 15 14 19 19 C 1.32586 * 121.03769 * 359.71334 * 18 16 15 20 20 C 1.38492 * 119.14786 * 359.97438 * 19 18 16 21 21 O 1.36046 * 120.86204 * 179.97438 * 20 19 18 22 22 C 1.42904 * 117.00138 * 0.02562 * 21 20 19 23 23 H 1.08996 * 109.47194 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47886 * 300.00484 * 1 2 3 25 25 H 1.09001 * 109.46995 * 60.00249 * 1 2 3 26 26 H 1.08994 * 109.47388 * 240.00046 * 2 1 3 27 27 H 1.09001 * 109.46995 * 119.99751 * 2 1 3 28 28 H 0.97005 * 119.99661 * 179.97438 * 8 7 5 29 29 H 0.96998 * 120.00005 * 95.00592 * 13 3 2 30 30 H 1.07997 * 120.42851 * 179.97438 * 19 18 16 31 31 H 1.09004 * 109.46959 * 180.02562 * 22 21 20 32 32 H 1.09001 * 109.46726 * 300.00212 * 22 21 20 33 33 H 1.09000 * 109.47186 * 60.00473 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 3.5419 1.4444 -0.1238 6 1 4.1471 1.8890 0.6524 7 6 4.1432 0.8785 -1.2279 8 7 5.4539 0.8797 -1.3357 9 14 3.0964 0.1100 -2.5706 10 1 2.8745 -1.3260 -2.2645 11 1 1.7881 0.8093 -2.6394 12 1 3.7942 0.2359 -3.8754 13 7 1.6522 2.0975 1.2518 14 6 0.3989 2.6813 1.3703 15 7 -0.4561 2.6572 0.3535 16 6 -1.6507 3.2060 0.4640 17 17 -2.7360 3.1428 -0.8894 18 7 -2.0420 3.8060 1.5709 19 6 -1.2452 3.8774 2.6282 20 6 0.0164 3.3099 2.5616 21 8 0.8626 3.3632 3.6255 22 6 0.3881 4.0257 4.7994 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3635 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 5.8771 0.4812 -2.1123 29 1 2.2717 2.1233 1.9977 30 1 -1.5757 4.3716 3.5297 31 1 1.1589 3.9970 5.5695 32 1 0.1517 5.0627 4.5608 33 1 -0.5082 3.5231 5.1631 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161048885.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:51 Heat of formation + Delta-G solvation = 19.224184 kcal Electronic energy + Delta-G solvation = -19085.333937 eV Core-core repulsion = 15980.343555 eV Total energy + Delta-G solvation = -3104.990381 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.03591 -38.34847 -37.04980 -36.42460 -33.59142 -32.13540 -31.73891 -29.73131 -27.63844 -27.31972 -23.59773 -23.39223 -22.53542 -20.33271 -18.56198 -17.90083 -17.45434 -16.62179 -16.12036 -15.37947 -15.17726 -14.72591 -14.21899 -13.95194 -13.78405 -13.41966 -12.83349 -12.29147 -12.17261 -12.00931 -11.83397 -11.25520 -11.21540 -11.14404 -11.08399 -11.00837 -10.68672 -10.64238 -9.93505 -9.53823 -9.30457 -9.03143 -8.90570 -8.67427 -7.28653 -6.24187 -4.27559 1.10303 1.49138 1.69066 3.17222 3.21501 3.33871 3.38026 3.63227 3.94102 4.28503 4.34333 4.73057 4.88433 5.04209 5.09108 5.12448 5.35068 5.38324 5.90548 5.98623 6.03409 6.14018 6.54591 6.65735 6.72476 6.82097 6.90789 7.18554 7.22517 7.40203 7.65325 7.99048 8.34718 8.46937 8.75952 9.35047 10.87759 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.017586 B = 0.007371 C = 0.005619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.796704 B = 3797.868553 C = 4981.792766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.139 4.139 3 C 0.245 3.755 4 H 0.057 0.943 5 C -0.538 4.538 6 H 0.080 0.920 7 C 0.080 3.920 8 N -0.890 5.890 9 Si 0.882 3.118 10 H -0.275 1.275 11 H -0.257 1.257 12 H -0.294 1.294 13 N -0.658 5.658 14 C 0.454 3.546 15 N -0.531 5.531 16 C 0.376 3.624 17 Cl 0.009 6.991 18 N -0.537 5.537 19 C 0.095 3.905 20 C -0.050 4.050 21 O -0.306 6.306 22 C 0.028 3.972 23 H 0.032 0.968 24 H 0.042 0.958 25 H 0.059 0.941 26 H 0.057 0.943 27 H 0.058 0.942 28 H 0.268 0.732 29 H 0.415 0.585 30 H 0.169 0.831 31 H 0.101 0.899 32 H 0.054 0.946 33 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.802 4.323 8.533 15.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.177 4.177 3 C 0.142 3.858 4 H 0.074 0.926 5 C -0.576 4.576 6 H 0.098 0.902 7 C -0.124 4.124 8 N -0.527 5.527 9 Si 0.711 3.289 10 H -0.202 1.202 11 H -0.181 1.181 12 H -0.221 1.221 13 N -0.286 5.286 14 C 0.204 3.796 15 N -0.262 5.262 16 C 0.080 3.920 17 Cl 0.036 6.964 18 N -0.261 5.261 19 C -0.064 4.064 20 C -0.106 4.106 21 O -0.217 6.217 22 C -0.068 4.068 23 H 0.051 0.949 24 H 0.061 0.939 25 H 0.078 0.922 26 H 0.075 0.925 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.253 0.747 30 H 0.186 0.814 31 H 0.120 0.880 32 H 0.073 0.927 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -13.002 4.066 7.433 15.519 hybrid contribution 0.104 -0.343 0.249 0.437 sum -12.898 3.722 7.683 15.467 Atomic orbital electron populations 1.21862 0.96995 0.99057 1.01881 1.22296 0.94343 0.99828 1.01242 1.19319 0.95785 0.88583 0.82135 0.92569 1.21017 0.88458 1.40123 1.08023 0.90154 1.24813 0.94883 0.95042 0.97630 1.69867 1.08715 1.44267 1.29830 0.86919 0.81113 0.79984 0.80885 1.20224 1.18102 1.22110 1.45226 1.10060 1.54681 1.18592 1.17976 0.87832 0.88328 0.85428 1.67652 1.03394 1.25286 1.29830 1.22320 0.87750 0.93089 0.88805 1.98395 1.60608 1.96762 1.40588 1.67659 1.36846 1.21961 0.99677 1.22729 0.88656 0.97833 0.97153 1.20059 0.93550 1.06869 0.90155 1.86073 1.40085 1.74634 1.20942 1.23050 1.01317 0.96530 0.85859 0.94868 0.93893 0.92185 0.92504 0.92336 0.92213 0.74747 0.81450 0.88022 0.92719 0.92775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.70 8.45 37.16 0.31 -2.39 16 2 C -0.14 -2.98 5.11 -26.73 -0.14 -3.12 16 3 C 0.25 5.62 1.84 -69.08 -0.13 5.49 16 4 H 0.06 1.39 6.62 -51.93 -0.34 1.05 16 5 C -0.54 -14.34 9.31 -34.44 -0.32 -14.66 16 6 H 0.08 2.28 7.98 -52.49 -0.42 1.86 16 7 C 0.08 2.22 5.45 -17.82 -0.10 2.13 16 8 N -0.89 -26.13 13.96 55.43 0.77 -25.36 16 9 Si 0.88 21.28 24.41 -169.99 -4.15 17.13 16 10 H -0.28 -6.46 6.83 56.52 0.39 -6.08 16 11 H -0.26 -6.04 6.53 56.52 0.37 -5.67 16 12 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 13 N -0.66 -13.09 5.14 -54.76 -0.28 -13.37 16 14 C 0.45 8.41 6.06 -154.51 -0.94 7.47 16 15 N -0.53 -10.12 6.60 -10.75 -0.07 -10.19 16 16 C 0.38 6.53 8.18 -92.00 -0.75 5.78 16 17 Cl 0.01 0.13 29.26 -51.86 -1.52 -1.38 16 18 N -0.54 -8.62 10.40 -11.62 -0.12 -8.74 16 19 C 0.10 1.32 10.30 -17.13 -0.18 1.15 16 20 C -0.05 -0.78 6.75 -38.82 -0.26 -1.04 16 21 O -0.31 -4.17 9.86 -19.89 -0.20 -4.36 16 22 C 0.03 0.24 9.84 101.05 0.99 1.23 16 23 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.04 0.82 5.60 -51.93 -0.29 0.52 16 25 H 0.06 1.19 7.69 -51.93 -0.40 0.79 16 26 H 0.06 1.29 3.22 -51.93 -0.17 1.13 16 27 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 28 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 29 H 0.41 7.83 7.98 -40.82 -0.33 7.51 16 30 H 0.17 1.66 6.45 -52.49 -0.34 1.32 16 31 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.05 0.40 7.71 -51.93 -0.40 0.00 16 33 H 0.05 0.38 7.71 -51.93 -0.40 -0.02 16 LS Contribution 285.09 15.07 4.30 4.30 Total: -1.00 -29.70 285.09 -6.30 -36.00 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -3.54 Total: 3.95 kcal Atomic # 6 Polarization: 3.53 SS G_CDS: -1.50 Total: 2.03 kcal Atomic # 7 Polarization: -57.96 SS G_CDS: 0.30 Total: -57.66 kcal Atomic # 8 Polarization: -4.17 SS G_CDS: -0.20 Total: -4.36 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.15 Total: 17.13 kcal Atomic # 17 Polarization: 0.13 SS G_CDS: -1.52 Total: -1.38 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -29.70 -6.30 -36.00 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161048885.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.227 kcal (2) G-P(sol) polarization free energy of solvation -29.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.003 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds