Wall clock time and date at job start Mon Mar 30 2020 01:09:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.46894 * 2 1 4 4 H 1.09000 * 109.47140 * 304.99571 * 3 2 1 5 5 C 1.50706 * 109.47430 * 184.99730 * 3 2 1 6 6 H 1.07999 * 120.00193 * 240.00552 * 5 3 2 7 7 C 1.37879 * 119.99398 * 59.99633 * 5 3 2 8 8 N 1.31514 * 119.99350 * 180.02562 * 7 5 3 9 9 Si 1.86798 * 120.00608 * 0.02562 * 7 5 3 10 10 H 1.48493 * 109.47326 * 270.00340 * 9 7 5 11 11 H 1.48506 * 109.46545 * 30.00090 * 9 7 5 12 12 H 1.48498 * 109.47210 * 149.99801 * 9 7 5 13 13 N 1.46500 * 109.47204 * 64.99698 * 3 2 1 14 14 C 1.38767 * 120.00219 * 274.99450 * 13 3 2 15 15 N 1.32874 * 120.54603 * 359.72978 * 14 13 3 16 16 C 1.31930 * 120.73132 * 179.70707 * 15 14 13 17 17 Cl 1.73594 * 119.05140 * 180.28742 * 16 15 14 18 18 N 1.31840 * 121.89932 * 0.57742 * 16 15 14 19 19 C 1.32586 * 121.03769 * 359.71334 * 18 16 15 20 20 C 1.38492 * 119.14786 * 359.97438 * 19 18 16 21 21 O 1.36046 * 120.86204 * 179.97438 * 20 19 18 22 22 C 1.42904 * 117.00138 * 0.02562 * 21 20 19 23 23 H 1.08996 * 109.47194 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47886 * 300.00484 * 1 2 3 25 25 H 1.09001 * 109.46995 * 60.00249 * 1 2 3 26 26 H 1.08994 * 109.47388 * 240.00046 * 2 1 3 27 27 H 1.09001 * 109.46995 * 119.99751 * 2 1 3 28 28 H 0.97005 * 119.99661 * 179.97438 * 8 7 5 29 29 H 0.96998 * 120.00005 * 95.00592 * 13 3 2 30 30 H 1.07997 * 120.42851 * 179.97438 * 19 18 16 31 31 H 1.09004 * 109.46959 * 180.02562 * 22 21 20 32 32 H 1.09001 * 109.46726 * 300.00212 * 22 21 20 33 33 H 1.09000 * 109.47186 * 60.00473 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 3.5419 1.4444 -0.1238 6 1 4.1471 1.8890 0.6524 7 6 4.1432 0.8785 -1.2279 8 7 5.4539 0.8797 -1.3357 9 14 3.0964 0.1100 -2.5706 10 1 2.8745 -1.3260 -2.2645 11 1 1.7881 0.8093 -2.6394 12 1 3.7942 0.2359 -3.8754 13 7 1.6522 2.0975 1.2518 14 6 0.3989 2.6813 1.3703 15 7 -0.4561 2.6572 0.3535 16 6 -1.6507 3.2060 0.4640 17 17 -2.7360 3.1428 -0.8894 18 7 -2.0420 3.8060 1.5709 19 6 -1.2452 3.8774 2.6282 20 6 0.0164 3.3099 2.5616 21 8 0.8626 3.3632 3.6255 22 6 0.3881 4.0257 4.7994 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3635 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 5.8771 0.4812 -2.1123 29 1 2.2717 2.1233 1.9977 30 1 -1.5757 4.3716 3.5297 31 1 1.1589 3.9970 5.5695 32 1 0.1517 5.0627 4.5608 33 1 -0.5082 3.5231 5.1631 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161048885.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:50 Heat of formation + Delta-G solvation = -1.124103 kcal Electronic energy + Delta-G solvation = -19086.216305 eV Core-core repulsion = 15980.343555 eV Total energy + Delta-G solvation = -3105.872749 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.28644 -39.41722 -38.58335 -37.68244 -35.23021 -33.91908 -33.22040 -31.06356 -29.10654 -28.45018 -25.06832 -24.66121 -24.17417 -21.99617 -20.02774 -19.01584 -18.78177 -18.37850 -17.34296 -17.03309 -16.53791 -15.89048 -15.62495 -15.30103 -15.26813 -14.77135 -14.60620 -13.93271 -13.64024 -13.22588 -13.07951 -12.90564 -12.73127 -12.44934 -12.36826 -12.33545 -12.17318 -12.07214 -11.73976 -11.32670 -11.20792 -10.85012 -10.30912 -10.20044 -8.64216 -8.37743 -6.44089 -0.12064 0.19607 0.45515 1.29386 1.37345 1.47567 2.18505 2.21314 2.27447 2.66672 2.98383 3.18788 3.54505 3.80907 3.99676 4.26697 4.34333 4.44503 4.47048 4.48665 4.81062 4.81402 4.95686 5.05644 5.11954 5.21551 5.43926 5.50945 5.63302 5.80045 6.18645 6.41309 6.54630 6.67865 7.08055 7.24848 8.77652 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.017586 B = 0.007371 C = 0.005619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.796704 B = 3797.868553 C = 4981.792766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.136 4.136 3 C 0.259 3.741 4 H 0.038 0.962 5 C -0.537 4.537 6 H 0.049 0.951 7 C 0.029 3.971 8 N -0.936 5.936 9 Si 0.937 3.063 10 H -0.261 1.261 11 H -0.249 1.249 12 H -0.295 1.295 13 N -0.671 5.671 14 C 0.430 3.570 15 N -0.552 5.552 16 C 0.358 3.642 17 Cl 0.020 6.980 18 N -0.533 5.533 19 C 0.105 3.895 20 C -0.039 4.039 21 O -0.322 6.322 22 C 0.014 3.986 23 H 0.054 0.946 24 H 0.043 0.957 25 H 0.052 0.948 26 H 0.046 0.954 27 H 0.059 0.941 28 H 0.270 0.730 29 H 0.416 0.584 30 H 0.214 0.786 31 H 0.120 0.880 32 H 0.071 0.929 33 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.160 4.597 9.738 18.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.175 4.175 3 C 0.154 3.846 4 H 0.056 0.944 5 C -0.575 4.575 6 H 0.067 0.933 7 C -0.171 4.171 8 N -0.575 5.575 9 Si 0.764 3.236 10 H -0.187 1.187 11 H -0.173 1.173 12 H -0.222 1.222 13 N -0.301 5.301 14 C 0.183 3.817 15 N -0.282 5.282 16 C 0.063 3.937 17 Cl 0.048 6.952 18 N -0.257 5.257 19 C -0.054 4.054 20 C -0.094 4.094 21 O -0.234 6.234 22 C -0.080 4.080 23 H 0.073 0.927 24 H 0.062 0.938 25 H 0.071 0.929 26 H 0.064 0.936 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.254 0.746 30 H 0.230 0.770 31 H 0.138 0.862 32 H 0.090 0.910 33 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -15.412 4.360 8.665 18.211 hybrid contribution 0.801 -0.281 0.069 0.852 sum -14.611 4.080 8.734 17.504 Atomic orbital electron populations 1.21723 0.94921 1.00323 1.01553 1.22202 0.96113 0.98444 1.00722 1.18870 0.92893 0.89635 0.83176 0.94440 1.21291 0.90604 1.38744 1.06906 0.93259 1.25576 0.95789 0.95759 0.99928 1.69991 1.10471 1.46099 1.30892 0.86015 0.79735 0.79893 0.77960 1.18739 1.17269 1.22234 1.44849 1.11269 1.56439 1.17544 1.18157 0.87281 0.89413 0.86875 1.67549 1.04113 1.25845 1.30725 1.22532 0.87706 0.93766 0.89736 1.98391 1.59950 1.96735 1.40134 1.67767 1.37078 1.21095 0.99747 1.23437 0.87558 0.96642 0.97781 1.20025 0.94066 1.05524 0.89826 1.86083 1.40443 1.75139 1.21731 1.23469 1.02963 0.97257 0.84268 0.92695 0.93833 0.92898 0.93584 0.92183 0.92097 0.74626 0.76984 0.86196 0.91047 0.90775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.71 8.45 71.98 0.61 -4.10 16 2 C -0.14 -5.77 5.11 30.59 0.16 -5.61 16 3 C 0.26 11.97 1.84 44.25 0.08 12.05 16 4 H 0.04 1.88 6.62 -2.39 -0.02 1.86 16 5 C -0.54 -29.46 9.31 25.60 0.24 -29.22 16 6 H 0.05 2.93 7.98 -2.91 -0.02 2.91 16 7 C 0.03 1.64 5.45 84.66 0.46 2.10 16 8 N -0.94 -56.51 13.96 21.45 0.30 -56.21 16 9 Si 0.94 44.19 24.41 68.60 1.67 45.86 16 10 H -0.26 -11.66 6.83 99.48 0.68 -10.98 16 11 H -0.25 -11.31 6.53 99.48 0.65 -10.66 16 12 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 13 N -0.67 -26.84 5.14 -327.16 -1.68 -28.52 16 14 C 0.43 15.55 6.06 133.22 0.81 16.35 16 15 N -0.55 -20.50 6.60 -187.91 -1.24 -21.74 16 16 C 0.36 11.82 8.18 180.83 1.48 13.30 16 17 Cl 0.02 0.59 29.26 -2.72 -0.08 0.51 16 18 N -0.53 -15.67 10.40 -190.69 -1.98 -17.65 16 19 C 0.11 2.56 10.30 84.64 0.87 3.43 16 20 C -0.04 -1.11 6.75 22.77 0.15 -0.96 16 21 O -0.32 -8.03 9.86 -94.07 -0.93 -8.95 16 22 C 0.01 0.19 9.84 113.37 1.12 1.31 16 23 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 24 H 0.04 1.59 5.60 -2.39 -0.01 1.57 16 25 H 0.05 2.01 7.69 -2.39 -0.02 1.99 16 26 H 0.05 2.04 3.22 -2.39 -0.01 2.03 16 27 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 28 H 0.27 15.29 8.31 -92.70 -0.77 14.52 16 29 H 0.42 16.02 7.98 -92.71 -0.74 15.28 16 30 H 0.21 3.10 6.45 -2.91 -0.02 3.08 16 31 H 0.12 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.07 0.73 7.71 -2.39 -0.02 0.71 16 33 H 0.07 0.71 7.71 -2.39 -0.02 0.70 16 Total: -1.00 -65.16 285.09 2.37 -62.79 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: 0.33 Total: 15.24 kcal Atomic # 6 Polarization: 2.69 SS G_CDS: 5.97 Total: 8.67 kcal Atomic # 7 Polarization: -119.51 SS G_CDS: -4.61 Total: -124.12 kcal Atomic # 8 Polarization: -8.03 SS G_CDS: -0.93 Total: -8.95 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 1.67 Total: 45.86 kcal Atomic # 17 Polarization: 0.59 SS G_CDS: -0.08 Total: 0.51 kcal Total: -65.16 2.37 -62.79 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161048885.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.667 kcal (2) G-P(sol) polarization free energy of solvation -65.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds