Wall clock time and date at job start Mon Mar 30 2020 01:09:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47279 * 2 1 4 4 H 1.09003 * 109.46787 * 305.83073 * 3 2 1 5 5 C 1.50698 * 109.47374 * 185.83202 * 3 2 1 6 6 H 1.08005 * 119.99892 * 334.08242 * 5 3 2 7 7 C 1.37875 * 120.00134 * 154.08138 * 5 3 2 8 8 N 1.31514 * 120.00153 * 6.24384 * 7 5 3 9 9 Si 1.86798 * 119.99926 * 186.24183 * 7 5 3 10 10 H 1.48500 * 109.46965 * 179.97438 * 9 7 5 11 11 H 1.48502 * 109.47354 * 300.00345 * 9 7 5 12 12 H 1.48500 * 109.47141 * 60.00417 * 9 7 5 13 13 N 1.46499 * 109.47195 * 65.83113 * 3 2 1 14 14 C 1.38595 * 119.99718 * 275.00115 * 13 3 2 15 15 N 1.32929 * 120.50483 * 359.72585 * 14 13 3 16 16 C 1.32269 * 120.64607 * 179.71711 * 15 14 13 17 17 O 1.35482 * 119.14584 * 180.26300 * 16 15 14 18 18 C 1.42898 * 116.99833 * 180.29572 * 17 16 15 19 19 N 1.32294 * 121.71200 * 0.56688 * 16 15 14 20 20 C 1.32533 * 120.95505 * 359.71854 * 19 16 15 21 21 C 1.38191 * 119.25831 * 359.97438 * 20 19 16 22 22 Cl 1.73591 * 120.78498 * 180.02562 * 21 20 19 23 23 H 1.09002 * 109.46874 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47263 * 300.00417 * 1 2 3 25 25 H 1.09007 * 109.47021 * 60.00287 * 1 2 3 26 26 H 1.08998 * 109.47263 * 239.99583 * 2 1 3 27 27 H 1.09007 * 109.47021 * 119.99713 * 2 1 3 28 28 H 0.97002 * 119.99512 * 355.17455 * 8 7 5 29 29 H 0.97000 * 120.00415 * 94.99749 * 13 3 2 30 30 H 1.08996 * 109.47359 * 299.99702 * 18 17 16 31 31 H 1.08994 * 109.47422 * 60.00248 * 18 17 16 32 32 H 1.09007 * 109.46995 * 180.02562 * 18 17 16 33 33 H 1.08005 * 120.37220 * 179.97438 * 20 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5939 1.9856 -0.8332 5 6 3.5401 1.4450 -0.1444 6 1 4.1154 0.5912 0.1821 7 6 4.1780 2.5371 -0.6932 8 7 3.4942 3.6240 -0.9773 9 14 6.0137 2.4730 -1.0333 10 1 6.4537 3.7641 -1.6204 11 1 6.7443 2.2316 0.2368 12 1 6.3022 1.3722 -1.9873 13 7 1.6697 2.0915 1.2601 14 6 0.4196 2.6738 1.3984 15 7 -0.4490 2.6541 0.3923 16 6 -1.6447 3.2041 0.5231 17 8 -2.5081 3.1619 -0.5201 18 6 -3.7846 3.7757 -0.3310 19 7 -2.0174 3.7996 1.6441 20 6 -1.2015 3.8622 2.6866 21 6 0.0553 3.2950 2.5957 22 17 1.1556 3.3533 3.9370 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 2.5306 3.6335 -0.8665 29 1 2.2992 2.1135 1.9977 30 1 -4.3018 3.2910 0.4970 31 1 -3.6493 4.8335 -0.1055 32 1 -4.3767 3.6705 -1.2402 33 1 -1.5154 4.3511 3.5971 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161055129.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:54 Heat of formation + Delta-G solvation = -14.659599 kcal Electronic energy + Delta-G solvation = -19142.131112 eV Core-core repulsion = 16035.671419 eV Total energy + Delta-G solvation = -3106.459692 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.17581 -39.65842 -38.13997 -37.50145 -35.09224 -33.86858 -33.34270 -30.94332 -28.49182 -28.26675 -25.45073 -24.71215 -23.98421 -21.95695 -20.11557 -19.38180 -18.53036 -17.60615 -17.45274 -16.89462 -16.28415 -15.88105 -15.62730 -15.35836 -15.12386 -14.77476 -14.53856 -14.11131 -13.24601 -12.91748 -12.89796 -12.80968 -12.55829 -12.50610 -12.35106 -12.18882 -12.06159 -11.97919 -11.92824 -11.43504 -10.73359 -10.71502 -10.15966 -10.03982 -8.87368 -8.69577 -6.53422 -0.00967 0.33602 1.07248 1.54126 1.55785 1.64210 1.81265 2.43262 2.53590 2.77021 3.11421 3.29606 3.60481 3.88811 4.26489 4.31351 4.35181 4.44039 4.46631 4.57799 4.68108 4.85992 4.94474 5.08413 5.17540 5.26192 5.48718 5.58107 5.80887 6.10872 6.11809 6.34949 6.47954 6.73559 7.28593 7.35539 8.64773 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.017817 B = 0.006912 C = 0.005989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.175772 B = 4049.975478 C = 4674.485512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.111 4.111 3 C 0.248 3.752 4 H 0.025 0.975 5 C -0.616 4.616 6 H 0.060 0.940 7 C -0.013 4.013 8 N -0.915 5.915 9 Si 1.116 2.884 10 H -0.289 1.289 11 H -0.267 1.267 12 H -0.268 1.268 13 N -0.666 5.666 14 C 0.466 3.534 15 N -0.590 5.590 16 C 0.524 3.476 17 O -0.310 6.310 18 C 0.042 3.958 19 N -0.606 5.606 20 C 0.228 3.772 21 C -0.267 4.267 22 Cl -0.045 7.045 23 H 0.053 0.947 24 H 0.033 0.967 25 H 0.043 0.957 26 H 0.060 0.940 27 H 0.052 0.948 28 H 0.260 0.740 29 H 0.404 0.596 30 H 0.068 0.932 31 H 0.063 0.937 32 H 0.129 0.871 33 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.946 -0.721 7.028 12.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.150 4.150 3 C 0.148 3.852 4 H 0.043 0.957 5 C -0.655 4.655 6 H 0.078 0.922 7 C -0.216 4.216 8 N -0.549 5.549 9 Si 0.937 3.063 10 H -0.215 1.215 11 H -0.192 1.192 12 H -0.193 1.193 13 N -0.294 5.294 14 C 0.218 3.782 15 N -0.329 5.329 16 C 0.220 3.780 17 O -0.211 6.211 18 C -0.052 4.052 19 N -0.342 5.342 20 C 0.067 3.933 21 C -0.306 4.306 22 Cl -0.017 7.017 23 H 0.072 0.928 24 H 0.052 0.948 25 H 0.062 0.938 26 H 0.079 0.921 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.242 0.758 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.147 0.853 33 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -9.155 -0.078 5.347 10.603 hybrid contribution -0.575 -0.595 1.543 1.751 sum -9.730 -0.674 6.891 11.942 Atomic orbital electron populations 1.21652 0.95709 0.99667 1.00843 1.21737 0.95326 0.97100 1.00834 1.18875 0.94053 0.89929 0.82385 0.95668 1.22409 0.92314 1.05715 1.45014 0.92160 1.27379 1.10755 0.91390 0.92106 1.70890 1.09213 1.28511 1.46314 0.82949 0.69397 0.76262 0.77682 1.21525 1.19234 1.19323 1.46714 1.09746 1.54603 1.18334 1.18484 0.87108 0.86019 0.86619 1.67279 1.03507 1.30026 1.32064 1.20582 0.85969 0.86074 0.85417 1.86066 1.27303 1.74336 1.33425 1.23247 0.79087 0.98050 1.04834 1.68232 1.37438 1.27303 1.01241 1.23029 0.85399 0.88491 0.96387 1.21874 0.97958 1.18304 0.92486 1.98311 1.62450 1.97822 1.43084 0.92773 0.94841 0.93771 0.92135 0.92954 0.92942 0.75762 0.91338 0.91848 0.85289 0.77324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.72 8.47 71.98 0.61 -4.11 16 2 C -0.11 -4.69 5.58 30.59 0.17 -4.52 16 3 C 0.25 12.14 1.82 44.25 0.08 12.22 16 4 H 0.03 1.43 6.34 -2.39 -0.02 1.41 16 5 C -0.62 -32.22 8.49 25.60 0.22 -32.00 16 6 H 0.06 3.06 7.82 -2.91 -0.02 3.04 16 7 C -0.01 -0.73 5.45 84.65 0.46 -0.26 16 8 N -0.91 -54.20 13.63 21.45 0.29 -53.91 16 9 Si 1.12 47.48 29.91 68.60 2.05 49.53 16 10 H -0.29 -12.64 7.11 99.48 0.71 -11.93 16 11 H -0.27 -10.50 7.11 99.48 0.71 -9.79 16 12 H -0.27 -10.63 7.11 99.48 0.71 -9.92 16 13 N -0.67 -29.68 5.12 -327.55 -1.68 -31.36 16 14 C 0.47 19.45 6.08 133.19 0.81 20.26 16 15 N -0.59 -25.45 6.65 -310.96 -2.07 -27.52 16 16 C 0.52 19.88 8.49 180.59 1.53 21.41 16 17 O -0.31 -10.61 10.56 -87.81 -0.93 -11.54 16 18 C 0.04 0.94 10.36 113.37 1.17 2.12 16 19 N -0.61 -19.72 9.22 -313.66 -2.89 -22.62 16 20 C 0.23 6.73 11.10 84.58 0.94 7.67 16 21 C -0.27 -9.24 6.38 22.62 0.14 -9.10 16 22 Cl -0.04 -1.35 27.77 -2.72 -0.08 -1.43 16 23 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 24 H 0.03 1.34 5.58 -2.39 -0.01 1.33 16 25 H 0.04 1.84 7.74 -2.38 -0.02 1.82 16 26 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 27 H 0.05 2.10 8.14 -2.38 -0.02 2.08 16 28 H 0.26 16.04 6.77 -92.71 -0.63 15.41 16 29 H 0.40 17.52 7.38 -92.71 -0.68 16.83 16 30 H 0.07 1.40 8.09 -2.39 -0.02 1.38 16 31 H 0.06 1.37 8.09 -2.39 -0.02 1.35 16 32 H 0.13 2.00 8.14 -2.38 -0.02 1.98 16 33 H 0.21 4.23 8.06 -2.91 -0.02 4.21 16 Total: -1.00 -63.11 294.83 1.44 -61.67 By element: Atomic # 1 Polarization: 22.88 SS G_CDS: 0.60 Total: 23.48 kcal Atomic # 6 Polarization: 7.54 SS G_CDS: 6.14 Total: 13.68 kcal Atomic # 7 Polarization: -129.06 SS G_CDS: -6.35 Total: -135.40 kcal Atomic # 8 Polarization: -10.61 SS G_CDS: -0.93 Total: -11.54 kcal Atomic # 14 Polarization: 47.48 SS G_CDS: 2.05 Total: 49.53 kcal Atomic # 17 Polarization: -1.35 SS G_CDS: -0.08 Total: -1.43 kcal Total: -63.11 1.44 -61.67 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161055129.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.011 kcal (2) G-P(sol) polarization free energy of solvation -63.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds