Wall clock time and date at job start Mon Mar 30 2020 01:21:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.46708 * 2 1 4 4 C 1.53005 * 109.46933 * 240.00236 * 2 1 3 5 5 Cl 1.80301 * 109.47226 * 65.00023 * 4 2 1 6 6 C 1.52998 * 109.47179 * 120.00044 * 2 1 3 7 7 N 1.46498 * 109.46961 * 295.00123 * 6 2 1 8 8 C 1.39889 * 119.99655 * 179.97438 * 7 6 2 9 9 C 1.39097 * 119.96028 * 0.02562 * 8 7 6 10 10 C 1.38623 * 120.46280 * 179.97438 * 9 8 7 11 11 C 1.37578 * 120.38959 * 0.02562 * 10 9 8 12 12 C 1.40785 * 119.90816 * 359.97438 * 11 10 9 13 13 C 1.41316 * 120.22969 * 180.02562 * 12 11 10 14 14 H 1.07996 * 120.00222 * 204.56495 * 13 12 11 15 15 C 1.39928 * 120.00171 * 24.56775 * 13 12 11 16 16 N 1.30854 * 119.99613 * 17.78879 * 15 13 12 17 17 Si 1.86799 * 120.00141 * 197.80076 * 15 13 12 18 18 H 1.48496 * 109.47097 * 359.97438 * 17 15 13 19 19 H 1.48495 * 109.47418 * 119.99574 * 17 15 13 20 20 H 1.48509 * 109.46763 * 239.99947 * 17 15 13 21 21 C 1.38593 * 119.96182 * 179.72258 * 8 7 6 22 22 F 1.35101 * 120.18635 * 0.02562 * 21 8 7 23 23 H 1.09005 * 109.47394 * 59.99652 * 1 2 3 24 24 H 1.09005 * 109.47274 * 299.99802 * 1 2 3 25 25 H 1.09003 * 109.47215 * 179.97438 * 1 2 3 26 26 H 1.09007 * 109.46560 * 184.99969 * 4 2 1 27 27 H 1.08993 * 109.46988 * 304.99900 * 4 2 1 28 28 H 1.09004 * 109.46624 * 55.00082 * 6 2 1 29 29 H 1.09000 * 109.47199 * 174.99736 * 6 2 1 30 30 H 0.97000 * 120.00450 * 0.02562 * 7 6 2 31 31 H 1.07996 * 119.76926 * 359.97438 * 9 8 7 32 32 H 1.08007 * 119.80162 * 180.02562 * 10 9 8 33 33 H 1.08002 * 120.04480 * 179.97438 * 11 10 9 34 34 H 0.97003 * 119.99458 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 17 1.5630 0.2100 -2.7177 6 6 2.0400 -0.7212 1.2492 7 7 1.6524 0.0353 2.4423 8 6 2.0085 -0.4307 3.7123 9 6 2.7311 -1.6122 3.8412 10 6 3.0900 -2.0833 5.0946 11 6 2.7352 -1.3879 6.2274 12 6 2.0038 -0.1901 6.1155 13 6 1.6363 0.5300 7.2745 14 1 0.7811 1.1891 7.2522 15 6 2.3805 0.3892 8.4511 16 7 3.5881 -0.1126 8.4052 17 14 1.6498 0.9170 10.0872 18 1 0.2805 1.4487 9.8693 19 1 1.5879 -0.2513 11.0017 20 1 2.5004 1.9740 10.6911 21 6 1.6465 0.2886 4.8402 22 9 0.9495 1.4394 4.7173 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 3.1263 -0.7994 -1.2056 27 1 1.6053 -1.7197 -1.2952 28 1 1.6053 -1.7198 1.2950 29 1 3.1263 -0.7995 1.2055 30 1 1.1482 0.8590 2.3518 31 1 3.0146 -2.1665 2.9587 32 1 3.6515 -3.0018 5.1823 33 1 3.0174 -1.7602 7.2011 34 1 4.1038 -0.2106 9.2209 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162382299.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:37 Heat of formation + Delta-G solvation = -56.368512 kcal Electronic energy + Delta-G solvation = -18130.004680 eV Core-core repulsion = 15001.816391 eV Total energy + Delta-G solvation = -3128.188288 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -47.09356 -38.10554 -36.88974 -35.75150 -34.06106 -32.52434 -29.54873 -28.01920 -27.25613 -25.38778 -24.76895 -21.17889 -20.58601 -20.01545 -17.47660 -16.28433 -15.89779 -15.62126 -15.11896 -14.84221 -14.42812 -14.13806 -13.83779 -13.52462 -13.30459 -12.98662 -12.78047 -12.64966 -11.82642 -11.77203 -11.67608 -11.46780 -11.22367 -11.02883 -10.84074 -10.75689 -10.58318 -10.47721 -10.45423 -9.87296 -9.54877 -9.35943 -8.86404 -7.40401 -6.84183 -6.30230 -4.41785 2.06535 2.70008 2.99198 3.06218 3.12627 3.20011 3.89644 4.02084 4.53831 4.57914 4.69139 4.78519 5.15674 5.24850 5.40293 5.56329 5.69829 5.78513 5.89304 5.95793 6.08179 6.18434 6.21197 6.63959 6.85864 6.94493 7.15354 7.24810 7.58043 7.72192 8.00129 8.09412 8.29171 8.43922 8.62001 8.77582 8.93932 10.11410 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.044541 B = 0.003634 C = 0.003438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.478634 B = 7703.351827 C = 8141.612438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.114 4.114 3 H 0.087 0.913 4 C -0.022 4.022 5 Cl -0.189 7.189 6 C 0.144 3.856 7 N -0.758 5.758 8 C 0.205 3.795 9 C -0.287 4.287 10 C -0.078 4.078 11 C -0.183 4.183 12 C 0.118 3.882 13 C -0.453 4.453 14 H 0.082 0.918 15 C 0.077 3.923 16 N -0.785 5.785 17 Si 0.911 3.089 18 H -0.259 1.259 19 H -0.271 1.271 20 H -0.273 1.273 21 C -0.097 4.097 22 F -0.168 7.168 23 H 0.061 0.939 24 H 0.063 0.937 25 H 0.057 0.943 26 H 0.095 0.905 27 H 0.095 0.905 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.393 0.607 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.122 0.878 34 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.863 -2.192 -12.356 12.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.133 4.133 3 H 0.105 0.895 4 C -0.085 4.085 5 Cl -0.162 7.162 6 C 0.018 3.982 7 N -0.392 5.392 8 C 0.105 3.895 9 C -0.310 4.310 10 C -0.097 4.097 11 C -0.204 4.204 12 C 0.114 3.886 13 C -0.481 4.481 14 H 0.100 0.900 15 C -0.142 4.142 16 N -0.410 5.410 17 Si 0.735 3.265 18 H -0.183 1.183 19 H -0.196 1.196 20 H -0.199 1.199 21 C -0.121 4.121 22 F -0.147 7.147 23 H 0.080 0.920 24 H 0.082 0.918 25 H 0.076 0.924 26 H 0.114 0.886 27 H 0.114 0.886 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.227 0.773 31 H 0.112 0.888 32 H 0.110 0.890 33 H 0.140 0.860 34 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.631 -2.277 -12.431 12.743 hybrid contribution -0.420 0.722 0.619 1.039 sum -2.051 -1.555 -11.812 12.089 Atomic orbital electron populations 1.21880 0.93791 1.02484 1.02534 1.21644 0.97683 1.00996 0.92936 0.89498 1.24358 1.02615 0.96800 0.84739 1.98710 1.93890 1.78260 1.45371 1.21007 0.98730 0.94876 0.83556 1.44237 1.64557 1.28318 1.02128 1.17402 0.95722 0.93616 0.82761 1.19717 1.14564 0.99944 0.96773 1.20475 0.98621 0.98056 0.92579 1.21031 1.05897 0.95805 0.97619 1.17408 0.89831 0.91422 0.89964 1.19546 1.11834 1.22775 0.93993 0.90010 1.25923 0.93810 0.93179 1.01239 1.69863 1.07795 1.32952 1.30369 0.86215 0.80552 0.79045 0.80706 1.18260 1.19565 1.19881 1.17281 1.13745 0.88210 0.92911 1.91203 1.78496 1.48367 1.96649 0.91982 0.91788 0.92372 0.88621 0.88641 0.92745 0.92859 0.77286 0.88788 0.88962 0.86020 0.90758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 8.92 37.16 0.33 -1.27 16 2 C -0.11 -1.20 2.49 -90.62 -0.23 -1.43 16 3 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 4 C -0.02 -0.19 6.07 37.16 0.23 0.04 16 5 Cl -0.19 -1.90 28.12 -51.86 -1.46 -3.35 16 6 C 0.14 1.94 4.30 -4.04 -0.02 1.92 16 7 N -0.76 -13.46 5.47 -58.61 -0.32 -13.78 16 8 C 0.20 4.57 6.65 -83.73 -0.56 4.01 16 9 C -0.29 -6.20 9.32 -39.12 -0.36 -6.57 16 10 C -0.08 -1.78 10.01 -39.68 -0.40 -2.18 16 11 C -0.18 -4.69 8.69 -38.86 -0.34 -5.02 16 12 C 0.12 3.18 5.58 -106.79 -0.60 2.58 16 13 C -0.45 -12.25 8.78 -37.78 -0.33 -12.58 16 14 H 0.08 2.20 7.74 -52.49 -0.41 1.80 16 15 C 0.08 1.94 5.14 -17.34 -0.09 1.85 16 16 N -0.79 -20.01 10.96 55.55 0.61 -19.40 16 17 Si 0.91 18.63 29.60 -169.99 -5.03 13.60 16 18 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 19 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 20 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 21 C -0.10 -2.48 7.31 -38.47 -0.28 -2.76 16 22 F -0.17 -4.23 16.08 2.25 0.04 -4.19 16 23 H 0.06 0.62 7.28 -51.93 -0.38 0.25 16 24 H 0.06 0.76 7.18 -51.93 -0.37 0.39 16 25 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 26 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.05 0.73 7.94 -51.93 -0.41 0.32 16 29 H 0.05 0.72 7.94 -51.93 -0.41 0.31 16 30 H 0.39 6.78 7.13 -40.82 -0.29 6.49 16 31 H 0.09 1.77 6.70 -52.49 -0.35 1.42 16 32 H 0.09 1.84 8.06 -52.48 -0.42 1.42 16 33 H 0.12 3.18 6.16 -52.49 -0.32 2.86 16 34 H 0.28 6.45 8.30 -40.82 -0.34 6.11 16 LS Contribution 301.79 15.07 4.55 4.55 Total: -1.00 -27.82 301.79 -8.45 -36.27 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -4.20 Total: 7.72 kcal Atomic # 6 Polarization: -18.77 SS G_CDS: -2.64 Total: -21.41 kcal Atomic # 7 Polarization: -33.47 SS G_CDS: 0.29 Total: -33.18 kcal Atomic # 9 Polarization: -4.23 SS G_CDS: 0.04 Total: -4.19 kcal Atomic # 14 Polarization: 18.63 SS G_CDS: -5.03 Total: 13.60 kcal Atomic # 17 Polarization: -1.90 SS G_CDS: -1.46 Total: -3.35 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -27.82 -8.45 -36.27 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162382299.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.101 kcal (2) G-P(sol) polarization free energy of solvation -27.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds