Wall clock time and date at job start Mon Mar 30 2020 01:21:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.46708 * 2 1 4 4 C 1.53005 * 109.46933 * 240.00236 * 2 1 3 5 5 Cl 1.80301 * 109.47226 * 65.00023 * 4 2 1 6 6 C 1.52998 * 109.47179 * 120.00044 * 2 1 3 7 7 N 1.46498 * 109.46961 * 295.00123 * 6 2 1 8 8 C 1.39889 * 119.99655 * 179.97438 * 7 6 2 9 9 C 1.39097 * 119.96028 * 0.02562 * 8 7 6 10 10 C 1.38623 * 120.46280 * 179.97438 * 9 8 7 11 11 C 1.37578 * 120.38959 * 0.02562 * 10 9 8 12 12 C 1.40785 * 119.90816 * 359.97438 * 11 10 9 13 13 C 1.41316 * 120.22969 * 180.02562 * 12 11 10 14 14 H 1.07996 * 120.00222 * 204.56495 * 13 12 11 15 15 C 1.39928 * 120.00171 * 24.56775 * 13 12 11 16 16 N 1.30854 * 119.99613 * 17.78879 * 15 13 12 17 17 Si 1.86799 * 120.00141 * 197.80076 * 15 13 12 18 18 H 1.48496 * 109.47097 * 359.97438 * 17 15 13 19 19 H 1.48495 * 109.47418 * 119.99574 * 17 15 13 20 20 H 1.48509 * 109.46763 * 239.99947 * 17 15 13 21 21 C 1.38593 * 119.96182 * 179.72258 * 8 7 6 22 22 F 1.35101 * 120.18635 * 0.02562 * 21 8 7 23 23 H 1.09005 * 109.47394 * 59.99652 * 1 2 3 24 24 H 1.09005 * 109.47274 * 299.99802 * 1 2 3 25 25 H 1.09003 * 109.47215 * 179.97438 * 1 2 3 26 26 H 1.09007 * 109.46560 * 184.99969 * 4 2 1 27 27 H 1.08993 * 109.46988 * 304.99900 * 4 2 1 28 28 H 1.09004 * 109.46624 * 55.00082 * 6 2 1 29 29 H 1.09000 * 109.47199 * 174.99736 * 6 2 1 30 30 H 0.97000 * 120.00450 * 0.02562 * 7 6 2 31 31 H 1.07996 * 119.76926 * 359.97438 * 9 8 7 32 32 H 1.08007 * 119.80162 * 180.02562 * 10 9 8 33 33 H 1.08002 * 120.04480 * 179.97438 * 11 10 9 34 34 H 0.97003 * 119.99458 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 17 1.5630 0.2100 -2.7177 6 6 2.0400 -0.7212 1.2492 7 7 1.6524 0.0353 2.4423 8 6 2.0085 -0.4307 3.7123 9 6 2.7311 -1.6122 3.8412 10 6 3.0900 -2.0833 5.0946 11 6 2.7352 -1.3879 6.2274 12 6 2.0038 -0.1901 6.1155 13 6 1.6363 0.5300 7.2745 14 1 0.7811 1.1891 7.2522 15 6 2.3805 0.3892 8.4511 16 7 3.5881 -0.1126 8.4052 17 14 1.6498 0.9170 10.0872 18 1 0.2805 1.4487 9.8693 19 1 1.5879 -0.2513 11.0017 20 1 2.5004 1.9740 10.6911 21 6 1.6465 0.2886 4.8402 22 9 0.9495 1.4394 4.7173 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 3.1263 -0.7994 -1.2056 27 1 1.6053 -1.7197 -1.2952 28 1 1.6053 -1.7198 1.2950 29 1 3.1263 -0.7995 1.2055 30 1 1.1482 0.8590 2.3518 31 1 3.0146 -2.1665 2.9587 32 1 3.6515 -3.0018 5.1823 33 1 3.0174 -1.7602 7.2011 34 1 4.1038 -0.2106 9.2209 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162382299.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:36 Heat of formation + Delta-G solvation = -70.709762 kcal Electronic energy + Delta-G solvation = -18130.626563 eV Core-core repulsion = 15001.816391 eV Total energy + Delta-G solvation = -3128.810172 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.04819 -39.63027 -38.14892 -36.77785 -35.64879 -34.02701 -31.42545 -29.59566 -28.07910 -27.22008 -26.10070 -22.78889 -22.34589 -21.17752 -19.27925 -17.94249 -17.63318 -16.95383 -16.62603 -16.25602 -15.92744 -15.68618 -15.18744 -14.86711 -14.67322 -14.41880 -14.14410 -13.71527 -13.62388 -13.44116 -13.01256 -12.78789 -12.72291 -12.53253 -12.20529 -12.12535 -11.84287 -11.72098 -11.44803 -11.29155 -11.21828 -11.13256 -10.53458 -9.30913 -8.69688 -7.99526 -6.40425 0.88966 1.15890 1.33753 1.37628 1.51070 1.53489 2.20219 2.67953 2.70629 3.64051 3.73990 3.80906 3.84862 4.10365 4.37542 4.44132 4.49301 4.60532 4.71937 4.85459 4.87536 4.95182 5.04006 5.10415 5.16703 5.28341 5.31827 5.48624 5.75394 5.91439 6.11173 6.20295 6.48060 6.73381 6.83789 6.88330 7.08536 8.28144 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.044541 B = 0.003634 C = 0.003438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.478634 B = 7703.351827 C = 8141.612438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.104 4.104 3 H 0.081 0.919 4 C -0.016 4.016 5 Cl -0.199 7.199 6 C 0.139 3.861 7 N -0.752 5.752 8 C 0.213 3.787 9 C -0.281 4.281 10 C -0.072 4.072 11 C -0.212 4.212 12 C 0.089 3.911 13 C -0.496 4.496 14 H 0.066 0.934 15 C 0.040 3.960 16 N -0.812 5.812 17 Si 0.984 3.016 18 H -0.264 1.264 19 H -0.256 1.256 20 H -0.263 1.263 21 C -0.136 4.136 22 F -0.175 7.175 23 H 0.067 0.933 24 H 0.046 0.954 25 H 0.064 0.936 26 H 0.110 0.890 27 H 0.113 0.887 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.394 0.606 31 H 0.131 0.869 32 H 0.123 0.877 33 H 0.108 0.892 34 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.438 -3.234 -13.579 14.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.123 4.123 3 H 0.099 0.901 4 C -0.079 4.079 5 Cl -0.173 7.173 6 C 0.015 3.985 7 N -0.384 5.384 8 C 0.110 3.890 9 C -0.304 4.304 10 C -0.091 4.091 11 C -0.233 4.233 12 C 0.085 3.915 13 C -0.525 4.525 14 H 0.084 0.916 15 C -0.176 4.176 16 N -0.437 5.437 17 Si 0.804 3.196 18 H -0.188 1.188 19 H -0.181 1.181 20 H -0.187 1.187 21 C -0.160 4.160 22 F -0.155 7.155 23 H 0.086 0.914 24 H 0.065 0.935 25 H 0.083 0.917 26 H 0.129 0.871 27 H 0.131 0.869 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.228 0.772 31 H 0.149 0.851 32 H 0.141 0.859 33 H 0.126 0.874 34 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.202 -3.322 -13.711 14.159 hybrid contribution -0.531 1.008 0.821 1.404 sum -1.733 -2.314 -12.890 13.210 Atomic orbital electron populations 1.21862 0.93911 1.02750 1.02007 1.21517 0.97453 1.00636 0.92653 0.90086 1.24396 1.03625 0.96870 0.83054 1.98717 1.94015 1.78676 1.45897 1.21261 0.99402 0.95081 0.82728 1.44424 1.63595 1.28503 1.01901 1.17529 0.94461 0.93254 0.83719 1.20114 1.13195 0.99479 0.97652 1.20837 0.97548 0.98553 0.92137 1.20984 1.07766 0.96362 0.98177 1.17776 0.90669 0.92232 0.90780 1.19688 1.12610 1.24316 0.95880 0.91599 1.26720 0.93833 0.92877 1.04194 1.69883 1.08622 1.33375 1.31852 0.85145 0.79295 0.79172 0.76011 1.18792 1.18063 1.18744 1.17629 1.15439 0.89013 0.93968 1.91161 1.78786 1.48823 1.96695 0.91386 0.93453 0.91711 0.87111 0.86904 0.91708 0.91972 0.77192 0.85093 0.85866 0.87438 0.89738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.87 8.92 71.98 0.64 -2.23 16 2 C -0.10 -1.92 2.49 -10.79 -0.03 -1.95 16 3 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 4 C -0.02 -0.23 6.07 71.98 0.44 0.21 16 5 Cl -0.20 -3.54 28.12 -2.72 -0.08 -3.62 16 6 C 0.14 3.32 4.30 86.38 0.37 3.69 16 7 N -0.75 -25.53 5.47 -339.34 -1.85 -27.38 16 8 C 0.21 9.31 6.65 38.15 0.25 9.57 16 9 C -0.28 -11.50 9.32 22.57 0.21 -11.29 16 10 C -0.07 -3.17 10.01 22.21 0.22 -2.95 16 11 C -0.21 -11.07 8.69 22.74 0.20 -10.87 16 12 C 0.09 4.99 5.58 -21.27 -0.12 4.87 16 13 C -0.50 -28.13 8.78 23.44 0.21 -27.92 16 14 H 0.07 3.77 7.74 -2.91 -0.02 3.75 16 15 C 0.04 2.06 5.14 85.25 0.44 2.50 16 16 N -0.81 -42.29 10.96 21.82 0.24 -42.05 16 17 Si 0.98 38.85 29.60 68.60 2.03 40.88 16 18 H -0.26 -10.50 7.11 99.48 0.71 -9.80 16 19 H -0.26 -9.47 7.11 99.48 0.71 -8.76 16 20 H -0.26 -9.85 7.11 99.48 0.71 -9.14 16 21 C -0.14 -7.13 7.31 22.99 0.17 -6.96 16 22 F -0.18 -9.17 16.08 44.97 0.72 -8.45 16 23 H 0.07 1.24 7.28 -2.38 -0.02 1.22 16 24 H 0.05 1.07 7.18 -2.38 -0.02 1.06 16 25 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.11 1.27 8.14 -2.38 -0.02 1.26 16 27 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.06 1.47 7.94 -2.38 -0.02 1.45 16 29 H 0.06 1.43 7.94 -2.39 -0.02 1.41 16 30 H 0.39 13.32 7.13 -92.71 -0.66 12.66 16 31 H 0.13 4.36 6.70 -2.91 -0.02 4.34 16 32 H 0.12 4.59 8.06 -2.91 -0.02 4.57 16 33 H 0.11 5.81 6.16 -2.91 -0.02 5.79 16 34 H 0.29 13.49 8.30 -92.71 -0.77 12.73 16 Total: -1.00 -61.96 301.79 4.52 -57.44 By element: Atomic # 1 Polarization: 26.07 SS G_CDS: 0.46 Total: 26.52 kcal Atomic # 6 Polarization: -46.34 SS G_CDS: 3.00 Total: -43.34 kcal Atomic # 7 Polarization: -67.82 SS G_CDS: -1.62 Total: -69.44 kcal Atomic # 9 Polarization: -9.17 SS G_CDS: 0.72 Total: -8.45 kcal Atomic # 14 Polarization: 38.85 SS G_CDS: 2.03 Total: 40.88 kcal Atomic # 17 Polarization: -3.54 SS G_CDS: -0.08 Total: -3.62 kcal Total: -61.96 4.52 -57.44 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162382299.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.265 kcal (2) G-P(sol) polarization free energy of solvation -61.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds