Wall clock time and date at job start Mon Mar 30 2020 01:21:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.47061 * 2 1 4 4 C 1.52998 * 109.47154 * 120.00889 * 2 1 3 5 5 Cl 1.80301 * 109.46837 * 299.99332 * 4 2 1 6 6 C 1.53001 * 109.46935 * 240.00700 * 2 1 3 7 7 N 1.46505 * 109.47356 * 64.99512 * 6 2 1 8 8 C 1.39889 * 120.00124 * 180.02562 * 7 6 2 9 9 C 1.39092 * 119.96061 * 359.97438 * 8 7 6 10 10 C 1.38618 * 120.46869 * 180.02562 * 9 8 7 11 11 C 1.37578 * 120.38502 * 359.97438 * 10 9 8 12 12 C 1.40794 * 119.90746 * 0.02562 * 11 10 9 13 13 C 1.41323 * 120.22713 * 179.97438 * 12 11 10 14 14 H 1.07994 * 119.99489 * 154.74181 * 13 12 11 15 15 C 1.39919 * 119.99719 * 334.73823 * 13 12 11 16 16 N 1.30848 * 120.00684 * 342.86458 * 15 13 12 17 17 Si 1.86802 * 119.99719 * 162.86663 * 15 13 12 18 18 H 1.48500 * 109.47222 * 59.99705 * 17 15 13 19 19 H 1.48500 * 109.47348 * 180.02562 * 17 15 13 20 20 H 1.48507 * 109.47252 * 299.99939 * 17 15 13 21 21 C 1.38583 * 119.96058 * 180.02562 * 8 7 6 22 22 F 1.35098 * 120.19201 * 0.25114 * 21 8 7 23 23 H 1.09002 * 109.46986 * 299.99556 * 1 2 3 24 24 H 1.09000 * 109.47109 * 59.99271 * 1 2 3 25 25 H 1.09000 * 109.46853 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.47414 * 59.99379 * 4 2 1 27 27 H 1.09001 * 109.46799 * 179.97438 * 4 2 1 28 28 H 1.09002 * 109.46912 * 305.00131 * 6 2 1 29 29 H 1.08991 * 109.47639 * 184.99978 * 6 2 1 30 30 H 0.96999 * 119.99515 * 0.02562 * 7 6 2 31 31 H 1.07999 * 119.76717 * 0.02562 * 9 8 7 32 32 H 1.08000 * 119.80826 * 179.97438 * 10 9 8 33 33 H 1.08000 * 120.04527 * 180.02562 * 11 10 9 34 34 H 0.96994 * 120.00507 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7214 1.2491 5 17 1.4392 0.1285 2.7213 6 6 2.0400 -0.7211 -1.2494 7 7 1.6523 0.0356 -2.4425 8 6 2.0084 -0.4303 -3.7125 9 6 2.7310 -1.6118 -3.8417 10 6 3.0899 -2.0828 -5.0950 11 6 2.7350 -1.3872 -6.2277 12 6 2.0035 -0.1894 -6.1156 13 6 1.6359 0.5308 -7.2746 14 1 0.7740 1.1813 -7.2553 15 6 2.3886 0.4011 -8.4469 16 7 3.5961 -0.1005 -8.3971 17 14 1.6697 0.9443 -10.0832 18 1 1.3435 2.3919 -10.0245 19 1 2.6597 0.7029 -11.1635 20 1 0.4340 0.1695 -10.3627 21 6 1.6417 0.2864 -4.8405 22 9 0.9451 1.4374 -4.7175 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 1.6767 -1.7490 1.2491 27 1 3.1301 -0.7218 1.2488 28 1 1.6053 -1.7196 -1.2954 29 1 3.1262 -0.7994 -1.2058 30 1 1.1487 0.8596 -2.3517 31 1 3.0145 -2.1661 -2.9592 32 1 3.6513 -3.0012 -5.1828 33 1 3.0171 -1.7594 -7.2014 34 1 4.1177 -0.1908 -9.2099 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162382300.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:39 Heat of formation + Delta-G solvation = -56.106465 kcal Electronic energy + Delta-G solvation = -18132.592272 eV Core-core repulsion = 15004.415347 eV Total energy + Delta-G solvation = -3128.176925 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -47.09534 -38.10687 -36.89430 -35.74862 -34.05394 -32.52069 -29.54705 -28.01846 -27.26545 -25.38650 -24.76605 -21.17376 -20.58562 -20.01057 -17.47344 -16.28614 -15.89618 -15.61956 -15.11704 -14.84284 -14.44170 -14.14068 -13.85143 -13.52455 -13.30582 -12.98173 -12.78745 -12.65237 -11.82025 -11.75456 -11.64493 -11.46690 -11.20143 -11.04212 -10.84101 -10.76674 -10.57625 -10.49419 -10.45719 -9.87218 -9.55691 -9.35005 -8.86434 -7.39864 -6.83353 -6.30224 -4.41925 2.06437 2.72164 2.99727 3.05290 3.08849 3.21979 3.89647 4.02038 4.54191 4.58575 4.69106 4.79281 5.15497 5.24458 5.40574 5.56206 5.70394 5.79589 5.89534 5.95750 6.08355 6.19103 6.21392 6.63865 6.85798 6.94498 7.15489 7.24844 7.57932 7.72047 7.99869 8.09278 8.29126 8.43840 8.61707 8.77654 8.93875 10.12476 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.044907 B = 0.003633 C = 0.003434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.363780 B = 7706.060245 C = 8151.974271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.113 4.113 3 H 0.086 0.914 4 C -0.022 4.022 5 Cl -0.188 7.188 6 C 0.144 3.856 7 N -0.758 5.758 8 C 0.205 3.795 9 C -0.286 4.286 10 C -0.078 4.078 11 C -0.182 4.182 12 C 0.118 3.882 13 C -0.454 4.454 14 H 0.081 0.919 15 C 0.078 3.922 16 N -0.787 5.787 17 Si 0.912 3.088 18 H -0.264 1.264 19 H -0.277 1.277 20 H -0.262 1.262 21 C -0.097 4.097 22 F -0.168 7.168 23 H 0.062 0.938 24 H 0.063 0.937 25 H 0.057 0.943 26 H 0.095 0.905 27 H 0.095 0.905 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.393 0.607 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.122 0.878 34 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.783 -2.148 12.372 12.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.132 4.132 3 H 0.104 0.896 4 C -0.085 4.085 5 Cl -0.162 7.162 6 C 0.018 3.982 7 N -0.392 5.392 8 C 0.105 3.895 9 C -0.310 4.310 10 C -0.097 4.097 11 C -0.203 4.203 12 C 0.115 3.885 13 C -0.483 4.483 14 H 0.099 0.901 15 C -0.141 4.141 16 N -0.411 5.411 17 Si 0.736 3.264 18 H -0.189 1.189 19 H -0.202 1.202 20 H -0.187 1.187 21 C -0.121 4.121 22 F -0.147 7.147 23 H 0.081 0.919 24 H 0.082 0.918 25 H 0.076 0.924 26 H 0.114 0.886 27 H 0.114 0.886 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.227 0.773 31 H 0.112 0.888 32 H 0.110 0.890 33 H 0.140 0.860 34 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.552 -2.239 12.445 12.739 hybrid contribution -0.429 0.742 -0.616 1.056 sum -1.981 -1.497 11.828 12.086 Atomic orbital electron populations 1.21891 0.93770 1.02519 1.02568 1.21634 0.97728 1.00948 0.92935 0.89558 1.24349 1.01520 0.97983 0.84657 1.98708 1.90631 1.81825 1.45017 1.21003 0.98731 0.94875 0.83556 1.44238 1.64589 1.28290 1.02126 1.17397 0.95690 0.93667 0.82754 1.19717 1.14558 0.99913 0.96777 1.20474 0.98622 0.98070 0.92577 1.21026 1.05899 0.95748 0.97601 1.17401 0.89805 0.91390 0.89948 1.19481 1.11348 1.23236 0.94223 0.90091 1.25908 0.93817 0.93225 1.01157 1.69833 1.07591 1.33036 1.30663 0.86303 0.79832 0.80212 0.80052 1.18882 1.20233 1.18684 1.17275 1.13646 0.88289 0.92919 1.91202 1.78524 1.48334 1.96648 0.91872 0.91825 0.92377 0.88641 0.88636 0.92734 0.92872 0.77285 0.88784 0.88952 0.86048 0.90649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 8.86 37.16 0.33 -1.29 16 2 C -0.11 -1.20 2.55 -90.62 -0.23 -1.43 16 3 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 4 C -0.02 -0.19 6.13 37.16 0.23 0.04 16 5 Cl -0.19 -1.88 27.84 -51.86 -1.44 -3.33 16 6 C 0.14 1.94 4.30 -4.04 -0.02 1.92 16 7 N -0.76 -13.46 5.46 -58.61 -0.32 -13.78 16 8 C 0.20 4.57 6.65 -83.74 -0.56 4.01 16 9 C -0.29 -6.20 9.32 -39.12 -0.36 -6.56 16 10 C -0.08 -1.78 10.01 -39.68 -0.40 -2.18 16 11 C -0.18 -4.67 8.68 -38.86 -0.34 -5.00 16 12 C 0.12 3.20 5.57 -106.78 -0.59 2.61 16 13 C -0.45 -12.29 8.77 -37.78 -0.33 -12.62 16 14 H 0.08 2.17 7.74 -52.49 -0.41 1.76 16 15 C 0.08 1.95 5.15 -17.34 -0.09 1.86 16 16 N -0.79 -20.08 10.97 55.55 0.61 -19.48 16 17 Si 0.91 18.67 29.59 -169.99 -5.03 13.63 16 18 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 19 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 20 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 21 C -0.10 -2.48 7.31 -38.48 -0.28 -2.76 16 22 F -0.17 -4.23 16.08 2.25 0.04 -4.19 16 23 H 0.06 0.64 7.06 -51.93 -0.37 0.28 16 24 H 0.06 0.76 7.18 -51.93 -0.37 0.39 16 25 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.05 0.73 7.94 -51.93 -0.41 0.32 16 29 H 0.05 0.72 7.94 -51.93 -0.41 0.30 16 30 H 0.39 6.78 7.13 -40.82 -0.29 6.49 16 31 H 0.09 1.77 6.70 -52.49 -0.35 1.42 16 32 H 0.09 1.84 8.06 -52.49 -0.42 1.42 16 33 H 0.12 3.17 6.19 -52.49 -0.32 2.85 16 34 H 0.28 6.53 8.30 -40.82 -0.34 6.19 16 LS Contribution 301.39 15.07 4.54 4.54 Total: -1.00 -27.78 301.39 -8.44 -36.22 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: -4.19 Total: 7.78 kcal Atomic # 6 Polarization: -18.76 SS G_CDS: -2.64 Total: -21.41 kcal Atomic # 7 Polarization: -33.54 SS G_CDS: 0.29 Total: -33.26 kcal Atomic # 9 Polarization: -4.23 SS G_CDS: 0.04 Total: -4.19 kcal Atomic # 14 Polarization: 18.67 SS G_CDS: -5.03 Total: 13.63 kcal Atomic # 17 Polarization: -1.88 SS G_CDS: -1.44 Total: -3.33 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -27.78 -8.44 -36.22 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162382300.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.885 kcal (2) G-P(sol) polarization free energy of solvation -27.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds