Wall clock time and date at job start Mon Mar 30 2020 01:21:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.47061 * 2 1 4 4 C 1.52998 * 109.47154 * 120.00889 * 2 1 3 5 5 Cl 1.80301 * 109.46837 * 299.99332 * 4 2 1 6 6 C 1.53001 * 109.46935 * 240.00700 * 2 1 3 7 7 N 1.46505 * 109.47356 * 64.99512 * 6 2 1 8 8 C 1.39889 * 120.00124 * 180.02562 * 7 6 2 9 9 C 1.39092 * 119.96061 * 359.97438 * 8 7 6 10 10 C 1.38618 * 120.46869 * 180.02562 * 9 8 7 11 11 C 1.37578 * 120.38502 * 359.97438 * 10 9 8 12 12 C 1.40794 * 119.90746 * 0.02562 * 11 10 9 13 13 C 1.41323 * 120.22713 * 179.97438 * 12 11 10 14 14 H 1.07994 * 119.99489 * 154.74181 * 13 12 11 15 15 C 1.39919 * 119.99719 * 334.73823 * 13 12 11 16 16 N 1.30848 * 120.00684 * 342.86458 * 15 13 12 17 17 Si 1.86802 * 119.99719 * 162.86663 * 15 13 12 18 18 H 1.48500 * 109.47222 * 59.99705 * 17 15 13 19 19 H 1.48500 * 109.47348 * 180.02562 * 17 15 13 20 20 H 1.48507 * 109.47252 * 299.99939 * 17 15 13 21 21 C 1.38583 * 119.96058 * 180.02562 * 8 7 6 22 22 F 1.35098 * 120.19201 * 0.25114 * 21 8 7 23 23 H 1.09002 * 109.46986 * 299.99556 * 1 2 3 24 24 H 1.09000 * 109.47109 * 59.99271 * 1 2 3 25 25 H 1.09000 * 109.46853 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.47414 * 59.99379 * 4 2 1 27 27 H 1.09001 * 109.46799 * 179.97438 * 4 2 1 28 28 H 1.09002 * 109.46912 * 305.00131 * 6 2 1 29 29 H 1.08991 * 109.47639 * 184.99978 * 6 2 1 30 30 H 0.96999 * 119.99515 * 0.02562 * 7 6 2 31 31 H 1.07999 * 119.76717 * 0.02562 * 9 8 7 32 32 H 1.08000 * 119.80826 * 179.97438 * 10 9 8 33 33 H 1.08000 * 120.04527 * 180.02562 * 11 10 9 34 34 H 0.96994 * 120.00507 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7214 1.2491 5 17 1.4392 0.1285 2.7213 6 6 2.0400 -0.7211 -1.2494 7 7 1.6523 0.0356 -2.4425 8 6 2.0084 -0.4303 -3.7125 9 6 2.7310 -1.6118 -3.8417 10 6 3.0899 -2.0828 -5.0950 11 6 2.7350 -1.3872 -6.2277 12 6 2.0035 -0.1894 -6.1156 13 6 1.6359 0.5308 -7.2746 14 1 0.7740 1.1813 -7.2553 15 6 2.3886 0.4011 -8.4469 16 7 3.5961 -0.1005 -8.3971 17 14 1.6697 0.9443 -10.0832 18 1 1.3435 2.3919 -10.0245 19 1 2.6597 0.7029 -11.1635 20 1 0.4340 0.1695 -10.3627 21 6 1.6417 0.2864 -4.8405 22 9 0.9451 1.4374 -4.7175 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 1.6767 -1.7490 1.2491 27 1 3.1301 -0.7218 1.2488 28 1 1.6053 -1.7196 -1.2954 29 1 3.1262 -0.7994 -1.2058 30 1 1.1487 0.8596 -2.3517 31 1 3.0145 -2.1661 -2.9592 32 1 3.6513 -3.0012 -5.1828 33 1 3.0171 -1.7594 -7.2014 34 1 4.1177 -0.1908 -9.2099 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162382300.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:38 Heat of formation + Delta-G solvation = -70.426232 kcal Electronic energy + Delta-G solvation = -18133.213223 eV Core-core repulsion = 15004.415347 eV Total energy + Delta-G solvation = -3128.797877 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.04992 -39.63153 -38.15133 -36.77773 -35.64206 -34.02295 -31.42415 -29.59532 -28.09095 -27.21896 -26.09862 -22.78747 -22.34552 -21.17000 -19.27518 -17.94011 -17.63343 -16.95447 -16.62982 -16.25619 -15.92801 -15.68698 -15.20247 -14.87065 -14.66874 -14.40891 -14.15217 -13.72398 -13.63808 -13.43549 -13.01361 -12.78021 -12.72001 -12.49842 -12.21539 -12.11769 -11.86032 -11.71597 -11.45297 -11.28556 -11.21197 -11.12856 -10.53612 -9.30457 -8.68997 -7.99528 -6.40654 0.89768 1.16212 1.33794 1.37399 1.48872 1.54608 2.19968 2.67933 2.71416 3.63902 3.73730 3.80616 3.86314 4.10265 4.37314 4.43743 4.49273 4.60618 4.72067 4.85430 4.87924 4.95439 5.03881 5.10208 5.16700 5.28175 5.32243 5.48654 5.75257 5.91289 6.10968 6.20170 6.48018 6.73246 6.83791 6.88237 7.08458 8.28718 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.044907 B = 0.003633 C = 0.003434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.363780 B = 7706.060245 C = 8151.974271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.103 4.103 3 H 0.081 0.919 4 C -0.016 4.016 5 Cl -0.199 7.199 6 C 0.139 3.861 7 N -0.752 5.752 8 C 0.213 3.787 9 C -0.281 4.281 10 C -0.072 4.072 11 C -0.211 4.211 12 C 0.089 3.911 13 C -0.498 4.498 14 H 0.066 0.934 15 C 0.040 3.960 16 N -0.814 5.814 17 Si 0.983 3.017 18 H -0.264 1.264 19 H -0.260 1.260 20 H -0.259 1.259 21 C -0.136 4.136 22 F -0.175 7.175 23 H 0.068 0.932 24 H 0.046 0.954 25 H 0.063 0.937 26 H 0.112 0.888 27 H 0.111 0.889 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.394 0.606 31 H 0.131 0.869 32 H 0.124 0.876 33 H 0.107 0.893 34 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.344 -3.141 13.617 14.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.122 4.122 3 H 0.099 0.901 4 C -0.079 4.079 5 Cl -0.172 7.172 6 C 0.015 3.985 7 N -0.384 5.384 8 C 0.110 3.890 9 C -0.304 4.304 10 C -0.091 4.091 11 C -0.232 4.232 12 C 0.086 3.914 13 C -0.527 4.527 14 H 0.085 0.915 15 C -0.176 4.176 16 N -0.439 5.439 17 Si 0.803 3.197 18 H -0.188 1.188 19 H -0.184 1.184 20 H -0.184 1.184 21 C -0.160 4.160 22 F -0.154 7.154 23 H 0.087 0.913 24 H 0.065 0.935 25 H 0.082 0.918 26 H 0.130 0.870 27 H 0.129 0.871 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.228 0.772 31 H 0.149 0.851 32 H 0.141 0.859 33 H 0.125 0.875 34 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.110 -3.236 13.748 14.167 hybrid contribution -0.547 1.012 -0.821 1.413 sum -1.657 -2.224 12.926 13.221 Atomic orbital electron populations 1.21872 0.93963 1.02723 1.02032 1.21508 0.97434 1.00647 0.92659 0.90051 1.24386 1.02427 0.98167 0.82969 1.98715 1.90805 1.82174 1.45537 1.21257 0.99425 0.95058 0.82726 1.44424 1.63626 1.28477 1.01897 1.17524 0.94435 0.93305 0.83716 1.20115 1.13177 0.99444 0.97656 1.20836 0.97551 0.98567 0.92133 1.20982 1.07765 0.96312 0.98160 1.17772 0.90654 0.92203 0.90775 1.19648 1.12135 1.24801 0.96094 0.91534 1.26706 0.93815 0.92943 1.04124 1.69861 1.08423 1.33510 1.32061 0.85244 0.79291 0.79530 0.75599 1.18834 1.18377 1.18354 1.17621 1.15318 0.89087 0.93968 1.91161 1.78809 1.48785 1.96694 0.91312 0.93472 0.91804 0.86959 0.87074 0.91740 0.91940 0.77188 0.85081 0.85852 0.87474 0.89732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.91 8.86 71.98 0.64 -2.27 16 2 C -0.10 -1.92 2.55 -10.79 -0.03 -1.95 16 3 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 4 C -0.02 -0.23 6.13 71.98 0.44 0.21 16 5 Cl -0.20 -3.51 27.84 -2.72 -0.08 -3.59 16 6 C 0.14 3.32 4.30 86.38 0.37 3.69 16 7 N -0.75 -25.51 5.46 -339.35 -1.85 -27.36 16 8 C 0.21 9.30 6.65 38.14 0.25 9.55 16 9 C -0.28 -11.48 9.32 22.57 0.21 -11.27 16 10 C -0.07 -3.18 10.01 22.20 0.22 -2.96 16 11 C -0.21 -11.04 8.68 22.74 0.20 -10.84 16 12 C 0.09 5.02 5.57 -21.26 -0.12 4.90 16 13 C -0.50 -28.22 8.77 23.44 0.21 -28.02 16 14 H 0.07 3.79 7.74 -2.91 -0.02 3.77 16 15 C 0.04 2.08 5.15 85.25 0.44 2.52 16 16 N -0.81 -42.45 10.97 21.82 0.24 -42.21 16 17 Si 0.98 38.87 29.59 68.60 2.03 40.90 16 18 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 19 H -0.26 -9.44 7.11 99.48 0.71 -8.73 16 20 H -0.26 -10.02 7.11 99.48 0.71 -9.32 16 21 C -0.14 -7.09 7.31 22.98 0.17 -6.93 16 22 F -0.17 -9.15 16.08 44.97 0.72 -8.43 16 23 H 0.07 1.27 7.06 -2.39 -0.02 1.26 16 24 H 0.05 1.07 7.18 -2.39 -0.02 1.06 16 25 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.11 1.26 8.14 -2.39 -0.02 1.25 16 28 H 0.06 1.47 7.94 -2.39 -0.02 1.45 16 29 H 0.06 1.43 7.94 -2.39 -0.02 1.41 16 30 H 0.39 13.30 7.13 -92.71 -0.66 12.64 16 31 H 0.13 4.36 6.70 -2.91 -0.02 4.34 16 32 H 0.12 4.59 8.06 -2.91 -0.02 4.57 16 33 H 0.11 5.79 6.19 -2.91 -0.02 5.77 16 34 H 0.29 13.61 8.30 -92.71 -0.77 12.84 16 Total: -1.00 -61.87 301.39 4.52 -57.35 By element: Atomic # 1 Polarization: 26.24 SS G_CDS: 0.46 Total: 26.70 kcal Atomic # 6 Polarization: -46.35 SS G_CDS: 3.00 Total: -43.35 kcal Atomic # 7 Polarization: -67.96 SS G_CDS: -1.62 Total: -69.58 kcal Atomic # 9 Polarization: -9.15 SS G_CDS: 0.72 Total: -8.43 kcal Atomic # 14 Polarization: 38.87 SS G_CDS: 2.03 Total: 40.90 kcal Atomic # 17 Polarization: -3.51 SS G_CDS: -0.08 Total: -3.59 kcal Total: -61.87 4.52 -57.35 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162382300.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.080 kcal (2) G-P(sol) polarization free energy of solvation -61.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds