Wall clock time and date at job start Mon Mar 30 2020 01:21:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09008 * 109.47025 * 2 1 4 4 C 1.52998 * 109.47551 * 240.00317 * 2 1 3 5 5 Cl 1.80298 * 109.47108 * 64.99617 * 4 2 1 6 6 C 1.53001 * 109.47371 * 120.00079 * 2 1 3 7 7 N 1.46510 * 109.47021 * 295.00221 * 6 2 1 8 8 C 1.39675 * 120.00155 * 179.97438 * 7 6 2 9 9 C 1.39299 * 119.93479 * 0.02562 * 8 7 6 10 10 C 1.38699 * 120.39728 * 180.02562 * 9 8 7 11 11 F 1.35096 * 119.86568 * 179.97438 * 10 9 8 12 12 C 1.37929 * 120.27422 * 0.02562 * 10 9 8 13 13 C 1.40703 * 119.86472 * 359.97438 * 12 10 9 14 14 C 1.41417 * 120.19019 * 180.02562 * 13 12 10 15 15 H 1.07998 * 120.00143 * 24.34977 * 14 13 12 16 16 C 1.39925 * 119.99590 * 204.35672 * 14 13 12 17 17 N 1.30832 * 120.00320 * 17.73095 * 16 14 13 18 18 Si 1.86805 * 119.99894 * 197.73580 * 16 14 13 19 19 H 1.48499 * 109.47134 * 89.99505 * 18 16 14 20 20 H 1.48494 * 109.47177 * 209.99745 * 18 16 14 21 21 H 1.48500 * 109.46687 * 329.99939 * 18 16 14 22 22 C 1.38293 * 119.94179 * 179.72816 * 8 7 6 23 23 H 1.09005 * 109.46522 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47045 * 299.99522 * 1 2 3 25 25 H 1.09000 * 109.47159 * 60.00180 * 1 2 3 26 26 H 1.08997 * 109.47312 * 184.99876 * 4 2 1 27 27 H 1.09003 * 109.46975 * 304.99687 * 4 2 1 28 28 H 1.08997 * 109.47501 * 175.00764 * 6 2 1 29 29 H 1.08999 * 109.47192 * 54.99867 * 6 2 1 30 30 H 0.96996 * 119.99529 * 359.97438 * 7 6 2 31 31 H 1.07999 * 119.80210 * 359.97438 * 9 8 7 32 32 H 1.07998 * 120.06310 * 179.97438 * 12 10 9 33 33 H 0.97001 * 119.99738 * 179.97438 * 17 16 14 34 34 H 1.08004 * 120.13376 * 0.02562 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 17 1.5631 0.2100 -2.7176 6 6 2.0401 -0.7213 1.2492 7 7 1.6524 0.0354 2.4424 8 6 2.0080 -0.4299 3.7105 9 6 2.7317 -1.6132 3.8391 10 6 3.0894 -2.0843 5.0936 11 9 3.7909 -3.2334 5.2059 12 6 2.7311 -1.3849 6.2272 13 6 2.0001 -0.1884 6.1104 14 6 1.6295 0.5345 7.2680 15 1 2.1998 0.4250 8.1786 16 6 0.5239 1.3914 7.2336 17 7 -0.3635 1.2764 6.2792 18 14 0.3150 2.6998 8.5505 19 1 0.9855 3.9514 8.1155 20 1 -1.1312 2.9612 8.7634 21 1 0.9247 2.2268 9.8192 22 6 1.6464 0.2882 4.8357 23 1 -0.3632 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 3.1264 -0.7993 -1.2056 27 1 1.6055 -1.7198 -1.2952 28 1 3.1263 -0.7994 1.2057 29 1 1.6055 -1.7198 1.2952 30 1 1.1489 0.8594 2.3518 31 1 3.0152 -2.1675 2.9567 32 1 3.0111 -1.7551 7.2024 33 1 -1.1301 1.8702 6.2556 34 1 1.0891 1.2080 4.7360 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162384309.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:41 Heat of formation + Delta-G solvation = -58.638239 kcal Electronic energy + Delta-G solvation = -18028.562856 eV Core-core repulsion = 14900.276145 eV Total energy + Delta-G solvation = -3128.286711 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -47.71638 -38.21217 -36.89090 -35.68929 -33.91086 -32.59235 -29.34033 -28.16236 -27.21479 -25.54327 -24.67503 -21.36964 -20.44651 -20.10551 -17.63504 -16.30384 -15.71290 -15.25826 -15.13228 -14.70319 -14.50654 -14.39279 -14.18172 -13.71777 -13.54657 -13.16486 -12.86117 -12.65107 -11.96199 -11.68526 -11.65657 -11.50699 -11.17150 -10.92068 -10.89407 -10.58492 -10.53448 -10.50824 -10.41907 -10.10228 -9.67595 -9.36922 -8.73634 -7.39143 -6.87295 -6.34564 -4.48635 2.08851 2.71970 2.94224 3.04527 3.08085 3.19637 3.88467 4.06336 4.53712 4.58447 4.72290 4.81889 5.19026 5.27576 5.43935 5.57916 5.72455 5.75451 5.83396 5.94408 6.11461 6.23966 6.32709 6.62239 6.76264 6.98177 7.14864 7.26024 7.50824 7.68484 7.92062 8.00878 8.29612 8.53469 8.66238 8.83952 8.91114 10.11140 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.018571 B = 0.004448 C = 0.003674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.378869 B = 6293.806288 C = 7618.895154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.113 4.113 3 H 0.086 0.914 4 C -0.022 4.022 5 Cl -0.189 7.189 6 C 0.141 3.859 7 N -0.754 5.754 8 C 0.240 3.760 9 C -0.334 4.334 10 C 0.142 3.858 11 F -0.169 7.169 12 C -0.289 4.289 13 C 0.158 3.842 14 C -0.457 4.457 15 H 0.081 0.919 16 C 0.079 3.921 17 N -0.785 5.785 18 Si 0.909 3.091 19 H -0.267 1.267 20 H -0.278 1.278 21 H -0.261 1.261 22 C -0.240 4.240 23 H 0.057 0.943 24 H 0.065 0.935 25 H 0.060 0.940 26 H 0.095 0.905 27 H 0.095 0.905 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.394 0.606 31 H 0.098 0.902 32 H 0.101 0.899 33 H 0.280 0.720 34 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.769 0.087 -11.456 11.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.132 4.132 3 H 0.105 0.895 4 C -0.085 4.085 5 Cl -0.163 7.163 6 C 0.015 3.985 7 N -0.388 5.388 8 C 0.140 3.860 9 C -0.357 4.357 10 C 0.122 3.878 11 F -0.148 7.148 12 C -0.310 4.310 13 C 0.154 3.846 14 C -0.487 4.487 15 H 0.099 0.901 16 C -0.140 4.140 17 N -0.410 5.410 18 Si 0.733 3.267 19 H -0.192 1.192 20 H -0.203 1.203 21 H -0.185 1.185 22 C -0.264 4.264 23 H 0.076 0.924 24 H 0.084 0.916 25 H 0.079 0.921 26 H 0.113 0.887 27 H 0.113 0.887 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.228 0.772 31 H 0.116 0.884 32 H 0.119 0.881 33 H 0.091 0.909 34 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 0.606 0.047 -11.759 11.775 hybrid contribution -0.290 0.630 0.450 0.827 sum 0.316 0.678 -11.309 11.334 Atomic orbital electron populations 1.21879 0.93718 1.02532 1.02562 1.21638 0.97725 1.00898 0.92891 0.89519 1.24367 1.02566 0.96842 0.84768 1.98708 1.93897 1.78261 1.45419 1.21029 0.98618 0.95031 0.83838 1.44312 1.64253 1.28088 1.02140 1.17260 0.92540 0.91949 0.84249 1.19694 1.18376 1.02867 0.94807 1.17237 0.93969 0.81983 0.94571 1.91323 1.77375 1.48876 1.97200 1.20842 1.14821 1.00040 0.95306 1.17061 0.86706 0.88154 0.92635 1.19588 1.10469 1.20763 0.97837 0.90127 1.25915 0.94606 0.96940 0.96561 1.69855 1.07953 1.32515 1.30646 0.86300 0.78043 0.80952 0.81395 1.19210 1.20297 1.18520 1.20756 1.12473 1.03180 0.89962 0.92400 0.91623 0.92056 0.88677 0.88665 0.92981 0.92829 0.77212 0.88407 0.88071 0.90869 0.86010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 8.92 37.16 0.33 -1.31 16 2 C -0.11 -1.21 2.49 -90.62 -0.23 -1.43 16 3 H 0.09 0.96 8.14 -51.92 -0.42 0.53 16 4 C -0.02 -0.20 6.07 37.16 0.23 0.03 16 5 Cl -0.19 -1.94 28.12 -51.86 -1.46 -3.40 16 6 C 0.14 1.93 4.30 -4.04 -0.02 1.91 16 7 N -0.75 -13.16 5.46 -58.69 -0.32 -13.48 16 8 C 0.24 5.31 6.64 -83.87 -0.56 4.76 16 9 C -0.33 -7.51 9.30 -39.02 -0.36 -7.88 16 10 C 0.14 3.40 7.28 -39.52 -0.29 3.11 16 11 F -0.17 -3.83 17.26 2.25 0.04 -3.79 16 12 C -0.29 -7.28 9.76 -38.76 -0.38 -7.66 16 13 C 0.16 4.15 5.57 -106.86 -0.60 3.55 16 14 C -0.46 -11.84 9.05 -37.74 -0.34 -12.19 16 15 H 0.08 2.01 7.91 -52.49 -0.41 1.60 16 16 C 0.08 1.91 5.14 -17.35 -0.09 1.82 16 17 N -0.79 -19.45 10.96 55.55 0.61 -18.84 16 18 Si 0.91 18.06 29.59 -169.99 -5.03 13.03 16 19 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 20 H -0.28 -5.41 7.11 56.52 0.40 -5.00 16 21 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 22 C -0.24 -5.95 8.53 -38.67 -0.33 -6.28 16 23 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 24 H 0.06 0.80 7.18 -51.93 -0.37 0.42 16 25 H 0.06 0.63 7.28 -51.93 -0.38 0.26 16 26 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 27 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.05 0.71 7.94 -51.93 -0.41 0.30 16 29 H 0.05 0.76 7.94 -51.93 -0.41 0.35 16 30 H 0.39 6.48 7.66 -40.82 -0.31 6.17 16 31 H 0.10 1.99 6.70 -52.49 -0.35 1.64 16 32 H 0.10 2.45 8.06 -52.49 -0.42 2.02 16 33 H 0.28 6.31 8.30 -40.82 -0.34 5.97 16 34 H 0.12 3.08 6.16 -52.48 -0.32 2.76 16 LS Contribution 303.46 15.07 4.57 4.57 Total: -1.00 -26.75 303.46 -8.44 -35.19 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: -4.23 Total: 8.28 kcal Atomic # 6 Polarization: -18.95 SS G_CDS: -2.63 Total: -21.57 kcal Atomic # 7 Polarization: -32.60 SS G_CDS: 0.29 Total: -32.32 kcal Atomic # 9 Polarization: -3.83 SS G_CDS: 0.04 Total: -3.79 kcal Atomic # 14 Polarization: 18.06 SS G_CDS: -5.03 Total: 13.03 kcal Atomic # 17 Polarization: -1.94 SS G_CDS: -1.46 Total: -3.40 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -26.75 -8.44 -35.19 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162384309.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.448 kcal (2) G-P(sol) polarization free energy of solvation -26.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds