Wall clock time and date at job start Mon Mar 30 2020 01:21:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09008 * 109.47025 * 2 1 4 4 C 1.52998 * 109.47551 * 240.00317 * 2 1 3 5 5 Cl 1.80298 * 109.47108 * 64.99617 * 4 2 1 6 6 C 1.53001 * 109.47371 * 120.00079 * 2 1 3 7 7 N 1.46510 * 109.47021 * 295.00221 * 6 2 1 8 8 C 1.39675 * 120.00155 * 179.97438 * 7 6 2 9 9 C 1.39299 * 119.93479 * 0.02562 * 8 7 6 10 10 C 1.38699 * 120.39728 * 180.02562 * 9 8 7 11 11 F 1.35096 * 119.86568 * 179.97438 * 10 9 8 12 12 C 1.37929 * 120.27422 * 0.02562 * 10 9 8 13 13 C 1.40703 * 119.86472 * 359.97438 * 12 10 9 14 14 C 1.41417 * 120.19019 * 180.02562 * 13 12 10 15 15 H 1.07998 * 120.00143 * 24.34977 * 14 13 12 16 16 C 1.39925 * 119.99590 * 204.35672 * 14 13 12 17 17 N 1.30832 * 120.00320 * 17.73095 * 16 14 13 18 18 Si 1.86805 * 119.99894 * 197.73580 * 16 14 13 19 19 H 1.48499 * 109.47134 * 89.99505 * 18 16 14 20 20 H 1.48494 * 109.47177 * 209.99745 * 18 16 14 21 21 H 1.48500 * 109.46687 * 329.99939 * 18 16 14 22 22 C 1.38293 * 119.94179 * 179.72816 * 8 7 6 23 23 H 1.09005 * 109.46522 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47045 * 299.99522 * 1 2 3 25 25 H 1.09000 * 109.47159 * 60.00180 * 1 2 3 26 26 H 1.08997 * 109.47312 * 184.99876 * 4 2 1 27 27 H 1.09003 * 109.46975 * 304.99687 * 4 2 1 28 28 H 1.08997 * 109.47501 * 175.00764 * 6 2 1 29 29 H 1.08999 * 109.47192 * 54.99867 * 6 2 1 30 30 H 0.96996 * 119.99529 * 359.97438 * 7 6 2 31 31 H 1.07999 * 119.80210 * 359.97438 * 9 8 7 32 32 H 1.07998 * 120.06310 * 179.97438 * 12 10 9 33 33 H 0.97001 * 119.99738 * 179.97438 * 17 16 14 34 34 H 1.08004 * 120.13376 * 0.02562 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 17 1.5631 0.2100 -2.7176 6 6 2.0401 -0.7213 1.2492 7 7 1.6524 0.0354 2.4424 8 6 2.0080 -0.4299 3.7105 9 6 2.7317 -1.6132 3.8391 10 6 3.0894 -2.0843 5.0936 11 9 3.7909 -3.2334 5.2059 12 6 2.7311 -1.3849 6.2272 13 6 2.0001 -0.1884 6.1104 14 6 1.6295 0.5345 7.2680 15 1 2.1998 0.4250 8.1786 16 6 0.5239 1.3914 7.2336 17 7 -0.3635 1.2764 6.2792 18 14 0.3150 2.6998 8.5505 19 1 0.9855 3.9514 8.1155 20 1 -1.1312 2.9612 8.7634 21 1 0.9247 2.2268 9.8192 22 6 1.6464 0.2882 4.8357 23 1 -0.3632 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 3.1264 -0.7993 -1.2056 27 1 1.6055 -1.7198 -1.2952 28 1 3.1263 -0.7994 1.2057 29 1 1.6055 -1.7198 1.2952 30 1 1.1489 0.8594 2.3518 31 1 3.0152 -2.1675 2.9567 32 1 3.0111 -1.7551 7.2024 33 1 -1.1301 1.8702 6.2556 34 1 1.0891 1.2080 4.7360 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162384309.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:40 Heat of formation + Delta-G solvation = -71.566422 kcal Electronic energy + Delta-G solvation = -18029.123464 eV Core-core repulsion = 14900.276145 eV Total energy + Delta-G solvation = -3128.847319 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.57313 -39.78637 -38.10575 -36.71860 -35.52909 -34.11157 -31.18899 -29.76458 -28.07073 -27.36163 -26.00467 -23.10195 -22.15802 -21.22546 -19.43813 -17.93540 -17.09922 -16.86391 -16.59766 -16.26425 -16.21004 -15.98992 -15.62043 -14.95809 -14.68532 -14.58658 -14.18317 -13.73560 -13.67287 -13.34349 -12.92420 -12.78867 -12.62380 -12.44554 -12.21301 -12.08719 -11.99634 -11.76870 -11.54799 -11.30465 -11.21734 -11.11494 -10.44899 -9.28322 -8.68954 -8.03889 -6.42840 0.91168 1.08576 1.33352 1.41658 1.54174 1.55301 2.22363 2.68684 2.74298 3.65913 3.73314 3.79196 3.85754 3.92749 4.37825 4.43595 4.53352 4.61131 4.72516 4.73329 4.87827 4.94839 4.96784 5.12825 5.16915 5.26823 5.33876 5.48636 5.69675 5.83118 6.09215 6.12204 6.45275 6.82194 6.92880 6.94370 7.12874 8.31320 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.018571 B = 0.004448 C = 0.003674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.378869 B = 6293.806288 C = 7618.895154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.101 4.101 3 H 0.086 0.914 4 C -0.018 4.018 5 Cl -0.198 7.198 6 C 0.137 3.863 7 N -0.745 5.745 8 C 0.250 3.750 9 C -0.334 4.334 10 C 0.138 3.862 11 F -0.162 7.162 12 C -0.317 4.317 13 C 0.134 3.866 14 C -0.494 4.494 15 H 0.076 0.924 16 C 0.042 3.958 17 N -0.811 5.811 18 Si 0.982 3.018 19 H -0.261 1.261 20 H -0.267 1.267 21 H -0.261 1.261 22 C -0.263 4.263 23 H 0.059 0.941 24 H 0.050 0.950 25 H 0.068 0.932 26 H 0.110 0.890 27 H 0.109 0.891 28 H 0.060 0.940 29 H 0.056 0.944 30 H 0.398 0.602 31 H 0.124 0.876 32 H 0.098 0.902 33 H 0.290 0.710 34 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.678 0.436 -12.716 12.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.120 4.120 3 H 0.104 0.896 4 C -0.081 4.081 5 Cl -0.172 7.172 6 C 0.012 3.988 7 N -0.377 5.377 8 C 0.148 3.852 9 C -0.357 4.357 10 C 0.119 3.881 11 F -0.141 7.141 12 C -0.338 4.338 13 C 0.130 3.870 14 C -0.523 4.523 15 H 0.094 0.906 16 C -0.174 4.174 17 N -0.435 5.435 18 Si 0.803 3.197 19 H -0.185 1.185 20 H -0.191 1.191 21 H -0.185 1.185 22 C -0.287 4.287 23 H 0.078 0.922 24 H 0.069 0.931 25 H 0.087 0.913 26 H 0.128 0.872 27 H 0.127 0.873 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.233 0.767 31 H 0.142 0.858 32 H 0.116 0.884 33 H 0.100 0.900 34 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 0.513 0.388 -13.070 13.086 hybrid contribution -0.260 0.459 0.734 0.904 sum 0.253 0.846 -12.336 12.368 Atomic orbital electron populations 1.21858 0.93918 1.02566 1.02171 1.21502 0.97396 1.00735 0.92370 0.89575 1.24394 1.03561 0.96842 0.83263 1.98715 1.94011 1.78606 1.45839 1.21237 0.99201 0.94988 0.83335 1.44421 1.63255 1.28325 1.01728 1.17290 0.91163 0.91299 0.85482 1.19940 1.17797 1.02928 0.95079 1.17370 0.93826 0.82065 0.94883 1.91329 1.77159 1.48400 1.97226 1.20917 1.16364 1.00694 0.95845 1.17390 0.87303 0.88693 0.93599 1.19833 1.11792 1.22720 0.97927 0.90570 1.26706 0.93590 0.98302 0.98851 1.69886 1.08358 1.33234 1.32053 0.85203 0.78402 0.77843 0.78282 1.18535 1.19128 1.18452 1.20713 1.13843 1.03576 0.90601 0.92166 0.93109 0.91347 0.87170 0.87266 0.92186 0.92585 0.76672 0.85823 0.88395 0.89952 0.87077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.96 8.92 71.98 0.64 -2.32 16 2 C -0.10 -1.92 2.49 -10.79 -0.03 -1.94 16 3 H 0.09 1.69 8.14 -2.38 -0.02 1.67 16 4 C -0.02 -0.26 6.07 71.98 0.44 0.17 16 5 Cl -0.20 -3.60 28.12 -2.72 -0.08 -3.68 16 6 C 0.14 3.40 4.30 86.38 0.37 3.77 16 7 N -0.75 -24.96 5.46 -339.59 -1.85 -26.82 16 8 C 0.25 10.95 6.64 38.16 0.25 11.21 16 9 C -0.33 -14.62 9.30 22.64 0.21 -14.41 16 10 C 0.14 6.61 7.28 22.31 0.16 6.77 16 11 F -0.16 -7.25 17.26 44.97 0.78 -6.47 16 12 C -0.32 -16.42 9.76 22.80 0.22 -16.20 16 13 C 0.13 7.23 5.57 -21.32 -0.12 7.11 16 14 C -0.49 -26.36 9.05 23.46 0.21 -26.15 16 15 H 0.08 3.96 7.91 -2.91 -0.02 3.94 16 16 C 0.04 2.06 5.14 85.25 0.44 2.50 16 17 N -0.81 -40.54 10.96 21.82 0.24 -40.30 16 18 Si 0.98 36.98 29.59 68.60 2.03 39.01 16 19 H -0.26 -9.50 7.11 99.48 0.71 -8.79 16 20 H -0.27 -9.50 7.11 99.48 0.71 -8.79 16 21 H -0.26 -9.70 7.11 99.48 0.71 -8.99 16 22 C -0.26 -13.29 8.53 22.86 0.20 -13.09 16 23 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 24 H 0.05 1.17 7.18 -2.39 -0.02 1.15 16 25 H 0.07 1.28 7.28 -2.39 -0.02 1.26 16 26 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.06 1.45 7.94 -2.39 -0.02 1.43 16 29 H 0.06 1.42 7.94 -2.39 -0.02 1.40 16 30 H 0.40 12.72 7.66 -92.71 -0.71 12.01 16 31 H 0.12 4.70 6.70 -2.91 -0.02 4.68 16 32 H 0.10 4.94 8.06 -2.91 -0.02 4.92 16 33 H 0.29 13.00 8.30 -92.71 -0.77 12.23 16 34 H 0.11 5.77 6.16 -2.91 -0.02 5.75 16 Total: -1.00 -57.63 303.46 4.52 -53.11 By element: Atomic # 1 Polarization: 27.33 SS G_CDS: 0.41 Total: 27.73 kcal Atomic # 6 Polarization: -45.58 SS G_CDS: 3.00 Total: -42.58 kcal Atomic # 7 Polarization: -65.51 SS G_CDS: -1.61 Total: -67.12 kcal Atomic # 9 Polarization: -7.25 SS G_CDS: 0.78 Total: -6.47 kcal Atomic # 14 Polarization: 36.98 SS G_CDS: 2.03 Total: 39.01 kcal Atomic # 17 Polarization: -3.60 SS G_CDS: -0.08 Total: -3.68 kcal Total: -57.63 4.52 -53.11 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162384309.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.460 kcal (2) G-P(sol) polarization free energy of solvation -57.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds