Wall clock time and date at job start Mon Mar 30 2020 01:21:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.47337 * 2 1 4 4 C 1.53005 * 109.46953 * 119.99735 * 2 1 3 5 5 Cl 1.80289 * 109.47116 * 299.99773 * 4 2 1 6 6 C 1.53001 * 109.47171 * 239.99908 * 2 1 3 7 7 N 1.46501 * 109.47110 * 65.00205 * 6 2 1 8 8 C 1.39678 * 119.99770 * 180.02562 * 7 6 2 9 9 C 1.39295 * 119.93964 * 359.72445 * 8 7 6 10 10 C 1.38699 * 120.39956 * 179.76709 * 9 8 7 11 11 F 1.35100 * 119.86439 * 180.28055 * 10 9 8 12 12 C 1.37921 * 120.27366 * 0.50815 * 10 9 8 13 13 C 1.40711 * 119.86832 * 359.74366 * 12 10 9 14 14 C 1.41414 * 120.19485 * 180.02562 * 13 12 10 15 15 H 1.08002 * 119.99769 * 204.47412 * 14 13 12 16 16 C 1.39915 * 119.99963 * 24.46739 * 14 13 12 17 17 N 1.30831 * 120.00404 * 17.90352 * 16 14 13 18 18 Si 1.86803 * 119.99873 * 197.89671 * 16 14 13 19 19 H 1.48504 * 109.46709 * 60.00781 * 18 16 14 20 20 H 1.48500 * 109.47027 * 180.02562 * 18 16 14 21 21 H 1.48495 * 109.47509 * 300.00198 * 18 16 14 22 22 C 1.38290 * 119.93654 * 179.97438 * 8 7 6 23 23 H 1.08998 * 109.46736 * 59.99893 * 1 2 3 24 24 H 1.09001 * 109.47087 * 300.00474 * 1 2 3 25 25 H 1.08995 * 109.47337 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46816 * 60.00428 * 4 2 1 27 27 H 1.09002 * 109.46906 * 179.97438 * 4 2 1 28 28 H 1.09002 * 109.47082 * 185.00190 * 6 2 1 29 29 H 1.09002 * 109.46863 * 304.99956 * 6 2 1 30 30 H 0.96997 * 120.00125 * 359.97438 * 7 6 2 31 31 H 1.07997 * 119.80149 * 0.02562 * 9 8 7 32 32 H 1.07997 * 120.06577 * 179.77326 * 12 10 9 33 33 H 0.96999 * 120.00371 * 179.97438 * 17 16 14 34 34 H 1.07997 * 120.13880 * 359.95901 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 17 1.4391 0.1288 2.7213 6 6 2.0400 -0.7213 -1.2492 7 7 1.6525 0.0353 -2.4424 8 6 2.0082 -0.4300 -3.7104 9 6 2.7362 -1.6106 -3.8388 10 6 3.0903 -2.0839 -5.0935 11 9 3.7916 -3.2332 -5.2057 12 6 2.7334 -1.3838 -6.2269 13 6 2.0024 -0.1872 -6.1103 14 6 1.6324 0.5359 -7.2679 15 1 1.4401 1.5968 -7.2034 16 6 1.5155 -0.1229 -8.4967 17 7 1.3989 -1.4255 -8.5321 18 14 1.5256 0.8575 -10.0867 19 1 2.8047 1.6036 -10.2000 20 1 1.3882 -0.0681 -11.2398 21 1 0.3917 1.8163 -10.0844 22 6 1.6412 0.2849 -4.8359 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.6767 -1.7489 1.2493 27 1 3.1300 -0.7216 1.2491 28 1 3.1264 -0.7995 -1.2055 29 1 1.6054 -1.7198 -1.2951 30 1 1.1483 0.8590 -2.3518 31 1 3.0232 -2.1629 -2.9562 32 1 3.0140 -1.7536 -7.2021 33 1 1.3175 -1.8822 -9.3840 34 1 1.0797 1.2021 -4.7365 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162384311.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:43 Heat of formation + Delta-G solvation = -58.186847 kcal Electronic energy + Delta-G solvation = -17910.406954 eV Core-core repulsion = 14782.139817 eV Total energy + Delta-G solvation = -3128.267137 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -47.59385 -38.25299 -36.92061 -35.73756 -34.05141 -32.38649 -29.55892 -28.05891 -27.28315 -25.54366 -24.73931 -21.21351 -20.67223 -20.03348 -17.69895 -16.04579 -15.98159 -15.46687 -14.92764 -14.75668 -14.48695 -14.28149 -14.17795 -13.76655 -13.59122 -13.16080 -12.88370 -12.73339 -11.88121 -11.74852 -11.60932 -11.56711 -11.15546 -10.97647 -10.93222 -10.67118 -10.58155 -10.50675 -10.43643 -10.05349 -9.70563 -9.33811 -8.69901 -7.44167 -6.84337 -6.38518 -4.48467 2.05042 2.70968 2.98701 3.04804 3.06994 3.22048 3.87510 4.00139 4.51903 4.55315 4.66203 4.77242 5.14491 5.22759 5.38772 5.58939 5.69844 5.76371 5.80342 5.89185 6.05513 6.17813 6.34661 6.64128 6.80877 6.97212 7.13212 7.20244 7.49736 7.75762 7.82360 8.05350 8.33106 8.46625 8.59026 8.83206 8.90656 10.11480 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.031961 B = 0.003619 C = 0.003323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.852436 B = 7735.075440 C = 8423.623155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.112 4.112 3 H 0.086 0.914 4 C -0.023 4.023 5 Cl -0.188 7.188 6 C 0.140 3.860 7 N -0.756 5.756 8 C 0.250 3.750 9 C -0.339 4.339 10 C 0.134 3.866 11 F -0.168 7.168 12 C -0.233 4.233 13 C 0.160 3.840 14 C -0.458 4.458 15 H 0.081 0.919 16 C 0.077 3.923 17 N -0.783 5.783 18 Si 0.910 3.090 19 H -0.262 1.262 20 H -0.278 1.278 21 H -0.265 1.265 22 C -0.298 4.298 23 H 0.063 0.937 24 H 0.062 0.938 25 H 0.057 0.943 26 H 0.095 0.905 27 H 0.095 0.905 28 H 0.053 0.947 29 H 0.055 0.945 30 H 0.392 0.608 31 H 0.097 0.903 32 H 0.126 0.874 33 H 0.283 0.717 34 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.307 1.852 12.764 12.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.131 4.131 3 H 0.104 0.896 4 C -0.086 4.086 5 Cl -0.162 7.162 6 C 0.014 3.986 7 N -0.390 5.390 8 C 0.151 3.849 9 C -0.363 4.363 10 C 0.114 3.886 11 F -0.147 7.147 12 C -0.254 4.254 13 C 0.157 3.843 14 C -0.487 4.487 15 H 0.099 0.901 16 C -0.143 4.143 17 N -0.408 5.408 18 Si 0.734 3.266 19 H -0.187 1.187 20 H -0.203 1.203 21 H -0.189 1.189 22 C -0.322 4.322 23 H 0.082 0.918 24 H 0.081 0.919 25 H 0.077 0.923 26 H 0.114 0.886 27 H 0.114 0.886 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.226 0.774 31 H 0.115 0.885 32 H 0.144 0.856 33 H 0.094 0.906 34 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -0.287 1.508 12.819 12.911 hybrid contribution -0.129 0.386 -0.647 0.764 sum -0.415 1.894 12.172 12.326 Atomic orbital electron populations 1.21892 0.93758 1.02598 1.02518 1.21630 0.97705 1.00865 0.92944 0.89568 1.24359 1.01532 0.98046 0.84660 1.98707 1.90628 1.81797 1.45052 1.21037 0.98782 0.95039 0.83701 1.44321 1.64388 1.28021 1.02272 1.17088 0.92174 0.91902 0.83735 1.19649 1.18968 1.02714 0.94960 1.17389 0.94279 0.82309 0.94608 1.91321 1.77435 1.48763 1.97200 1.21154 1.07656 1.00235 0.96344 1.17055 0.86059 0.89742 0.91458 1.19548 1.40910 0.96462 0.91737 0.90067 1.25966 0.92045 0.94913 1.01331 1.69838 1.33005 1.09253 1.28671 0.86336 0.80063 0.80256 0.79917 1.18682 1.20270 1.18910 1.20414 1.15637 1.04816 0.91325 0.91818 0.91887 0.92350 0.88632 0.88641 0.92859 0.92712 0.77407 0.88463 0.85625 0.90582 0.88633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 8.86 37.16 0.33 -1.20 16 2 C -0.11 -1.13 2.55 -90.62 -0.23 -1.36 16 3 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 4 C -0.02 -0.19 6.13 37.16 0.23 0.04 16 5 Cl -0.19 -1.84 27.84 -51.86 -1.44 -3.28 16 6 C 0.14 1.83 4.30 -4.04 -0.02 1.82 16 7 N -0.76 -12.41 5.46 -58.69 -0.32 -12.73 16 8 C 0.25 5.38 6.64 -83.87 -0.56 4.82 16 9 C -0.34 -7.68 9.30 -39.02 -0.36 -8.04 16 10 C 0.13 3.34 7.28 -39.53 -0.29 3.05 16 11 F -0.17 -4.05 17.26 2.25 0.04 -4.01 16 12 C -0.23 -6.19 8.67 -38.76 -0.34 -6.53 16 13 C 0.16 4.22 5.57 -106.86 -0.60 3.62 16 14 C -0.46 -11.85 9.05 -37.75 -0.34 -12.19 16 15 H 0.08 1.99 7.91 -52.49 -0.41 1.58 16 16 C 0.08 1.90 5.14 -17.35 -0.09 1.81 16 17 N -0.78 -20.13 10.96 55.55 0.61 -19.52 16 18 Si 0.91 18.24 29.60 -169.99 -5.03 13.21 16 19 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 20 H -0.28 -5.44 7.11 56.52 0.40 -5.03 16 21 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 22 C -0.30 -7.05 9.63 -38.66 -0.37 -7.42 16 23 H 0.06 0.69 7.18 -51.93 -0.37 0.32 16 24 H 0.06 0.61 7.06 -51.93 -0.37 0.24 16 25 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.05 0.71 7.93 -51.93 -0.41 0.30 16 29 H 0.05 0.75 7.95 -51.93 -0.41 0.34 16 30 H 0.39 5.79 7.66 -40.82 -0.31 5.48 16 31 H 0.10 1.99 6.70 -52.49 -0.35 1.64 16 32 H 0.13 3.48 6.15 -52.49 -0.32 3.16 16 33 H 0.28 6.62 8.30 -40.82 -0.34 6.28 16 34 H 0.10 2.11 8.06 -52.49 -0.42 1.69 16 LS Contribution 303.00 15.07 4.57 4.57 Total: -1.00 -27.34 303.00 -8.43 -35.77 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: -4.21 Total: 7.59 kcal Atomic # 6 Polarization: -18.95 SS G_CDS: -2.63 Total: -21.59 kcal Atomic # 7 Polarization: -32.54 SS G_CDS: 0.29 Total: -32.25 kcal Atomic # 9 Polarization: -4.05 SS G_CDS: 0.04 Total: -4.01 kcal Atomic # 14 Polarization: 18.24 SS G_CDS: -5.03 Total: 13.21 kcal Atomic # 17 Polarization: -1.84 SS G_CDS: -1.44 Total: -3.28 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -27.34 -8.43 -35.77 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162384311.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.422 kcal (2) G-P(sol) polarization free energy of solvation -27.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds