Wall clock time and date at job start Mon Mar 30 2020 01:21:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.47337 * 2 1 4 4 C 1.53005 * 109.46953 * 119.99735 * 2 1 3 5 5 Cl 1.80289 * 109.47116 * 299.99773 * 4 2 1 6 6 C 1.53001 * 109.47171 * 239.99908 * 2 1 3 7 7 N 1.46501 * 109.47110 * 65.00205 * 6 2 1 8 8 C 1.39678 * 119.99770 * 180.02562 * 7 6 2 9 9 C 1.39295 * 119.93964 * 359.72445 * 8 7 6 10 10 C 1.38699 * 120.39956 * 179.76709 * 9 8 7 11 11 F 1.35100 * 119.86439 * 180.28055 * 10 9 8 12 12 C 1.37921 * 120.27366 * 0.50815 * 10 9 8 13 13 C 1.40711 * 119.86832 * 359.74366 * 12 10 9 14 14 C 1.41414 * 120.19485 * 180.02562 * 13 12 10 15 15 H 1.08002 * 119.99769 * 204.47412 * 14 13 12 16 16 C 1.39915 * 119.99963 * 24.46739 * 14 13 12 17 17 N 1.30831 * 120.00404 * 17.90352 * 16 14 13 18 18 Si 1.86803 * 119.99873 * 197.89671 * 16 14 13 19 19 H 1.48504 * 109.46709 * 60.00781 * 18 16 14 20 20 H 1.48500 * 109.47027 * 180.02562 * 18 16 14 21 21 H 1.48495 * 109.47509 * 300.00198 * 18 16 14 22 22 C 1.38290 * 119.93654 * 179.97438 * 8 7 6 23 23 H 1.08998 * 109.46736 * 59.99893 * 1 2 3 24 24 H 1.09001 * 109.47087 * 300.00474 * 1 2 3 25 25 H 1.08995 * 109.47337 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46816 * 60.00428 * 4 2 1 27 27 H 1.09002 * 109.46906 * 179.97438 * 4 2 1 28 28 H 1.09002 * 109.47082 * 185.00190 * 6 2 1 29 29 H 1.09002 * 109.46863 * 304.99956 * 6 2 1 30 30 H 0.96997 * 120.00125 * 359.97438 * 7 6 2 31 31 H 1.07997 * 119.80149 * 0.02562 * 9 8 7 32 32 H 1.07997 * 120.06577 * 179.77326 * 12 10 9 33 33 H 0.96999 * 120.00371 * 179.97438 * 17 16 14 34 34 H 1.07997 * 120.13880 * 359.95901 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 17 1.4391 0.1288 2.7213 6 6 2.0400 -0.7213 -1.2492 7 7 1.6525 0.0353 -2.4424 8 6 2.0082 -0.4300 -3.7104 9 6 2.7362 -1.6106 -3.8388 10 6 3.0903 -2.0839 -5.0935 11 9 3.7916 -3.2332 -5.2057 12 6 2.7334 -1.3838 -6.2269 13 6 2.0024 -0.1872 -6.1103 14 6 1.6324 0.5359 -7.2679 15 1 1.4401 1.5968 -7.2034 16 6 1.5155 -0.1229 -8.4967 17 7 1.3989 -1.4255 -8.5321 18 14 1.5256 0.8575 -10.0867 19 1 2.8047 1.6036 -10.2000 20 1 1.3882 -0.0681 -11.2398 21 1 0.3917 1.8163 -10.0844 22 6 1.6412 0.2849 -4.8359 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.6767 -1.7489 1.2493 27 1 3.1300 -0.7216 1.2491 28 1 3.1264 -0.7995 -1.2055 29 1 1.6054 -1.7198 -1.2951 30 1 1.1483 0.8590 -2.3518 31 1 3.0232 -2.1629 -2.9562 32 1 3.0140 -1.7536 -7.2021 33 1 1.3175 -1.8822 -9.3840 34 1 1.0797 1.2021 -4.7365 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162384311.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:42 Heat of formation + Delta-G solvation = -71.871341 kcal Electronic energy + Delta-G solvation = -17911.000359 eV Core-core repulsion = 14782.139817 eV Total energy + Delta-G solvation = -3128.860541 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.53413 -39.79271 -38.11947 -36.75801 -35.60255 -33.89588 -31.44318 -29.64259 -28.07704 -27.37035 -26.04949 -22.89746 -22.38239 -21.15980 -19.48518 -17.82876 -17.36566 -16.68063 -16.54750 -16.35876 -16.17278 -15.97036 -15.61875 -14.98245 -14.68145 -14.59006 -14.20302 -13.74889 -13.64787 -13.34392 -12.96650 -12.77500 -12.55621 -12.48338 -12.23620 -12.08557 -11.93156 -11.80274 -11.56826 -11.30811 -11.20685 -11.09858 -10.41239 -9.35167 -8.68070 -8.05982 -6.43826 0.86239 1.14905 1.33612 1.40438 1.52250 1.57343 2.20656 2.69526 2.70024 3.66692 3.73042 3.80214 3.87234 3.95428 4.38412 4.43610 4.55282 4.62138 4.73790 4.79461 4.88398 4.95249 4.98205 5.08545 5.18354 5.27668 5.35595 5.47862 5.71337 5.83812 5.94768 6.16433 6.51523 6.73732 6.90184 6.93829 7.13469 8.29841 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.031961 B = 0.003619 C = 0.003323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.852436 B = 7735.075440 C = 8423.623155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.100 4.100 3 H 0.089 0.911 4 C -0.019 4.019 5 Cl -0.197 7.197 6 C 0.136 3.864 7 N -0.743 5.743 8 C 0.264 3.736 9 C -0.339 4.339 10 C 0.124 3.876 11 F -0.167 7.167 12 C -0.266 4.266 13 C 0.136 3.864 14 C -0.491 4.491 15 H 0.086 0.914 16 C 0.035 3.965 17 N -0.819 5.819 18 Si 0.985 3.015 19 H -0.259 1.259 20 H -0.270 1.270 21 H -0.255 1.255 22 C -0.313 4.313 23 H 0.054 0.946 24 H 0.068 0.932 25 H 0.057 0.943 26 H 0.107 0.893 27 H 0.109 0.891 28 H 0.059 0.941 29 H 0.055 0.945 30 H 0.402 0.598 31 H 0.122 0.878 32 H 0.104 0.896 33 H 0.290 0.710 34 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.461 2.555 14.009 14.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.119 4.119 3 H 0.107 0.893 4 C -0.082 4.082 5 Cl -0.171 7.171 6 C 0.011 3.989 7 N -0.376 5.376 8 C 0.162 3.838 9 C -0.363 4.363 10 C 0.104 3.896 11 F -0.146 7.146 12 C -0.287 4.287 13 C 0.133 3.867 14 C -0.520 4.520 15 H 0.104 0.896 16 C -0.181 4.181 17 N -0.444 5.444 18 Si 0.805 3.195 19 H -0.184 1.184 20 H -0.194 1.194 21 H -0.179 1.179 22 C -0.338 4.338 23 H 0.073 0.927 24 H 0.087 0.913 25 H 0.077 0.923 26 H 0.125 0.875 27 H 0.128 0.872 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.237 0.763 31 H 0.140 0.860 32 H 0.122 0.878 33 H 0.100 0.900 34 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -0.450 2.220 14.125 14.306 hybrid contribution -0.087 0.130 -0.875 0.889 sum -0.538 2.350 13.250 13.467 Atomic orbital electron populations 1.21883 0.93820 1.02573 1.02399 1.21494 0.97486 1.00792 0.92170 0.89291 1.24394 1.02377 0.98134 0.83321 1.98713 1.90781 1.82069 1.45498 1.21233 0.99242 0.95015 0.83400 1.44390 1.63310 1.28362 1.01525 1.17089 0.90557 0.90927 0.85263 1.19888 1.18507 1.03113 0.94759 1.17606 0.94392 0.82330 0.95237 1.91311 1.77389 1.48627 1.97273 1.21052 1.10014 1.01621 0.96040 1.17392 0.86433 0.89988 0.92929 1.19864 1.42393 0.96869 0.92859 0.89618 1.26874 0.90900 0.95789 1.04551 1.69909 1.33622 1.10945 1.29889 0.85204 0.80241 0.78706 0.75299 1.18377 1.19411 1.17882 1.20568 1.16273 1.05610 0.91323 0.92676 0.91282 0.92349 0.87459 0.87221 0.92300 0.92674 0.76268 0.85989 0.87829 0.89978 0.87588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.67 8.86 71.98 0.64 -2.03 16 2 C -0.10 -1.72 2.55 -10.79 -0.03 -1.75 16 3 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 4 C -0.02 -0.27 6.13 71.98 0.44 0.17 16 5 Cl -0.20 -3.37 27.84 -2.72 -0.08 -3.45 16 6 C 0.14 3.16 4.30 86.38 0.37 3.53 16 7 N -0.74 -22.71 5.46 -339.60 -1.85 -24.56 16 8 C 0.26 11.03 6.64 38.16 0.25 11.28 16 9 C -0.34 -14.96 9.30 22.63 0.21 -14.75 16 10 C 0.12 6.25 7.28 22.30 0.16 6.42 16 11 F -0.17 -8.09 17.26 44.97 0.78 -7.32 16 12 C -0.27 -14.64 8.67 22.80 0.20 -14.44 16 13 C 0.14 7.34 5.57 -21.31 -0.12 7.22 16 14 C -0.49 -26.05 9.05 23.46 0.21 -25.84 16 15 H 0.09 4.28 7.91 -2.91 -0.02 4.26 16 16 C 0.04 1.76 5.14 85.25 0.44 2.20 16 17 N -0.82 -43.31 10.96 21.82 0.24 -43.07 16 18 Si 0.99 37.54 29.60 68.60 2.03 39.57 16 19 H -0.26 -9.68 7.11 99.48 0.71 -8.98 16 20 H -0.27 -9.80 7.11 99.48 0.71 -9.10 16 21 H -0.25 -9.24 7.11 99.48 0.71 -8.53 16 22 C -0.31 -14.84 9.63 22.86 0.22 -14.62 16 23 H 0.05 1.08 7.18 -2.39 -0.02 1.06 16 24 H 0.07 1.17 7.06 -2.39 -0.02 1.15 16 25 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 27 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.06 1.36 7.93 -2.39 -0.02 1.35 16 29 H 0.06 1.33 7.95 -2.39 -0.02 1.31 16 30 H 0.40 10.94 7.66 -92.71 -0.71 10.23 16 31 H 0.12 4.70 6.70 -2.91 -0.02 4.68 16 32 H 0.10 6.05 6.15 -2.91 -0.02 6.03 16 33 H 0.29 13.87 8.30 -92.71 -0.77 13.10 16 34 H 0.11 4.66 8.06 -2.91 -0.02 4.64 16 Total: -1.00 -59.71 303.00 4.52 -55.19 By element: Atomic # 1 Polarization: 25.84 SS G_CDS: 0.41 Total: 26.25 kcal Atomic # 6 Polarization: -45.61 SS G_CDS: 3.00 Total: -42.62 kcal Atomic # 7 Polarization: -66.02 SS G_CDS: -1.61 Total: -67.63 kcal Atomic # 9 Polarization: -8.09 SS G_CDS: 0.78 Total: -7.32 kcal Atomic # 14 Polarization: 37.54 SS G_CDS: 2.03 Total: 39.57 kcal Atomic # 17 Polarization: -3.37 SS G_CDS: -0.08 Total: -3.45 kcal Total: -59.71 4.52 -55.19 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162384311.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.682 kcal (2) G-P(sol) polarization free energy of solvation -59.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds